Wall clock time and date at job start Tue Mar 31 2020 02:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42890 * 114.00074 * 2 1 4 4 C 1.53006 * 109.47219 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47303 * 64.99768 * 4 3 2 6 6 C 1.42891 * 113.99956 * 180.02562 * 5 4 3 7 7 H 1.08991 * 109.47766 * 29.99833 * 6 5 4 8 8 C 1.53009 * 109.47176 * 269.99750 * 6 5 4 9 9 C 1.50704 * 109.47210 * 150.00385 * 6 5 4 10 10 O 1.21288 * 119.99958 * 4.99030 * 9 6 5 11 11 N 1.34775 * 120.00211 * 184.72451 * 9 6 5 12 12 C 1.46961 * 120.59194 * 359.97438 * 11 9 6 13 13 C 1.53811 * 108.39944 * 124.75837 * 12 11 9 14 14 N 1.46960 * 108.57870 * 49.63843 * 13 12 11 15 15 C 1.36942 * 120.59771 * 124.62777 * 14 13 12 16 16 H 1.08003 * 119.99660 * 208.17894 * 15 14 13 17 17 C 1.38806 * 119.99809 * 28.17657 * 15 14 13 18 18 N 1.31622 * 120.00312 * 17.55998 * 17 15 14 19 19 Si 1.86808 * 119.99927 * 197.56209 * 17 15 14 20 20 H 1.48497 * 109.46877 * 59.99774 * 19 17 15 21 21 H 1.48497 * 109.47077 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46850 * 300.00078 * 19 17 15 23 23 C 1.46967 * 118.81107 * 304.64208 * 14 13 12 24 24 C 1.46967 * 120.59402 * 180.26938 * 11 9 6 25 25 H 1.09000 * 109.46838 * 299.99895 * 1 2 3 26 26 H 1.08994 * 109.47659 * 60.00051 * 1 2 3 27 27 H 1.08997 * 109.47356 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47686 * 60.00517 * 3 2 1 29 29 H 1.09005 * 109.47422 * 300.00087 * 3 2 1 30 30 H 1.08999 * 109.46799 * 304.99702 * 4 3 2 31 31 H 1.09006 * 109.47116 * 185.00043 * 4 3 2 32 32 H 1.08998 * 109.46715 * 59.99761 * 8 6 5 33 33 H 1.08999 * 109.46985 * 180.02562 * 8 6 5 34 34 H 1.09007 * 109.46862 * 300.00207 * 8 6 5 35 35 H 1.09006 * 109.60824 * 244.53999 * 12 11 9 36 36 H 1.09003 * 109.61378 * 5.04995 * 12 11 9 37 37 H 1.08998 * 109.74365 * 289.84625 * 13 12 11 38 38 H 1.09008 * 109.53499 * 169.30094 * 13 12 11 39 39 H 0.96998 * 120.00078 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.61110 * 295.48484 * 23 14 13 41 41 H 1.08998 * 109.75384 * 175.05522 * 23 14 13 42 42 H 1.08999 * 109.60868 * 354.94933 * 24 11 9 43 43 H 1.08998 * 109.60739 * 115.45722 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5795 -1.2219 6 6 5.3811 0.4190 -1.3245 7 1 5.8043 0.2819 -0.3295 8 6 5.9902 1.6652 -1.9705 9 6 5.6898 -0.7880 -2.1724 10 8 4.7903 -1.3928 -2.7168 11 7 6.9657 -1.1923 -2.3301 12 6 8.0662 -0.4655 -1.6817 13 6 8.8728 -1.4625 -0.8326 14 7 9.1891 -2.6344 -1.6610 15 6 10.4857 -3.0447 -1.8220 16 1 10.7801 -3.5634 -2.7224 17 6 11.4215 -2.7939 -0.8279 18 7 11.0233 -2.4864 0.3884 19 14 13.2460 -2.8928 -1.2164 20 1 13.5797 -1.9109 -2.2792 21 1 14.0299 -2.5847 0.0067 22 1 13.5788 -4.2620 -1.6852 23 6 8.0891 -3.3580 -2.3139 24 6 7.2821 -2.3641 -3.1589 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5682 0.8410 31 1 3.9786 2.1765 0.0889 32 1 5.7668 2.5382 -1.3573 33 1 7.0704 1.5425 -2.0491 34 1 5.5669 1.8022 -2.9657 35 1 8.7104 -0.0232 -2.4418 36 1 7.6603 0.3180 -1.0417 37 1 8.2832 -1.7727 0.0301 38 1 9.7968 -0.9915 -0.4970 39 1 11.6773 -2.3108 1.0829 40 1 7.4438 -3.8032 -1.5566 41 1 8.4930 -4.1406 -2.9562 42 1 6.3581 -2.8349 -3.4946 43 1 7.8717 -2.0537 -4.0214 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113396113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:25 Heat of formation + Delta-G solvation = -87.449972 kcal Electronic energy + Delta-G solvation = -23736.140881 eV Core-core repulsion = 20204.225504 eV Total energy + Delta-G solvation = -3531.915377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.93858 -38.37751 -37.30839 -36.48589 -33.97156 -32.35354 -31.00146 -30.16941 -29.49766 -27.01476 -26.42712 -24.58893 -23.22020 -22.85663 -22.46482 -20.42180 -18.78943 -17.40897 -17.06938 -16.70205 -16.07100 -15.82292 -15.51408 -15.06056 -14.95820 -14.65276 -14.33900 -13.83967 -13.70327 -13.37812 -13.26833 -12.97214 -12.85142 -12.49460 -12.29599 -12.12096 -11.77528 -11.51007 -11.31103 -11.26938 -11.07371 -10.82636 -10.74964 -10.49865 -10.25046 -10.04617 -9.86742 -9.84621 -9.75144 -9.08393 -8.60611 -8.22238 -6.72679 -5.87496 -3.31520 3.01670 3.06199 3.33924 3.39831 3.41072 3.62760 3.92605 4.43066 4.69659 4.85681 4.94683 5.00267 5.10238 5.13247 5.17094 5.23073 5.25310 5.31115 5.33355 5.50998 5.54414 5.63536 5.65448 5.76071 5.86575 5.95860 6.03684 6.12327 6.21429 6.35018 6.44176 6.78368 6.90671 6.99293 7.11898 7.22947 7.42573 7.70500 7.92528 8.34027 8.62472 9.10276 9.72877 10.30151 11.20283 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.029448 B = 0.003500 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.585841 B = 7996.957521 C = 8182.437791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.065 3.935 4 C 0.059 3.941 5 O -0.349 6.349 6 C 0.072 3.928 7 H 0.086 0.914 8 C -0.177 4.177 9 C 0.512 3.488 10 O -0.536 6.536 11 N -0.596 5.596 12 C 0.073 3.927 13 C 0.157 3.843 14 N -0.591 5.591 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.905 3.095 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.132 3.868 24 C 0.097 3.903 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.024 0.976 38 H 0.100 0.900 39 H 0.256 0.744 40 H 0.024 0.976 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.597 10.841 -0.130 17.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.012 4.012 4 C -0.018 4.018 5 O -0.267 6.267 6 C 0.011 3.989 7 H 0.104 0.896 8 C -0.235 4.235 9 C 0.299 3.701 10 O -0.413 6.413 11 N -0.330 5.330 12 C -0.051 4.051 13 C 0.030 3.970 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.734 3.266 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.005 3.995 24 C -0.026 4.026 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.975 10.299 -0.411 17.365 hybrid contribution 1.005 0.356 0.222 1.089 sum -12.970 10.655 -0.189 16.787 Atomic orbital electron populations 1.22732 0.81297 1.02872 0.99591 1.88034 1.19380 1.27059 1.95285 1.22525 0.92333 0.85655 1.00640 1.22630 0.93513 0.97650 0.88011 1.88088 1.19811 1.81646 1.37170 1.21859 0.83200 0.94282 0.99602 0.89627 1.22426 1.02276 0.96606 1.02176 1.20233 0.82707 0.85187 0.82016 1.90664 1.45235 1.56664 1.48721 1.47980 1.05443 1.30013 1.49548 1.22965 0.88754 0.96019 0.97330 1.21281 0.98451 0.86763 0.90494 1.43978 1.02011 1.28484 1.56918 1.19175 0.84250 1.35126 0.99921 0.91476 1.25062 0.98666 1.01344 0.94478 1.70008 1.33049 1.51266 1.00384 0.86335 0.84952 0.78169 0.77112 1.20955 1.21606 1.20822 1.21311 0.90253 0.92990 0.94996 1.22205 0.99978 0.86922 0.93526 0.94374 0.94106 0.89591 0.91898 0.92433 0.92169 0.91670 0.91560 0.89851 0.91332 0.91544 0.90746 0.95821 0.88156 0.93438 0.95813 0.91479 0.89947 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.13 10.67 -40.08 -0.43 -5.56 16 3 C 0.07 0.69 6.32 37.16 0.23 0.92 16 4 C 0.06 0.68 6.13 37.16 0.23 0.91 16 5 O -0.35 -5.54 9.49 -59.70 -0.57 -6.11 16 6 C 0.07 1.08 2.30 -27.88 -0.06 1.01 16 7 H 0.09 1.17 7.12 -51.93 -0.37 0.80 16 8 C -0.18 -2.11 9.09 37.16 0.34 -1.77 16 9 C 0.51 9.69 7.12 -10.98 -0.08 9.61 16 10 O -0.54 -12.08 15.91 -14.31 -0.23 -12.30 16 11 N -0.60 -11.08 2.94 -172.19 -0.51 -11.59 16 12 C 0.07 1.29 5.21 -3.37 -0.02 1.27 16 13 C 0.16 3.51 5.53 -3.37 -0.02 3.49 16 14 N -0.59 -14.38 2.97 -171.75 -0.51 -14.89 16 15 C -0.26 -6.75 9.58 -15.06 -0.14 -6.90 16 16 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 17 C 0.00 0.09 4.90 -17.43 -0.09 0.00 16 18 N -0.90 -25.13 11.20 55.49 0.62 -24.51 16 19 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.13 2.80 6.67 -3.58 -0.02 2.77 16 24 C 0.10 1.85 6.59 -3.58 -0.02 1.83 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 31 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 32 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 33 H 0.08 0.96 5.35 -51.93 -0.28 0.68 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.08 4.57 -51.93 -0.24 0.84 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 2.45 5.99 -51.92 -0.31 2.14 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 1.35 7.94 -51.93 -0.41 0.94 16 42 H 0.08 1.56 6.99 -51.93 -0.36 1.19 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -33.32 343.95 -6.99 -40.31 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.99 Total: -0.98 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 1.46 Total: 14.56 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.39 Total: -50.98 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -1.22 Total: -23.97 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.32 -6.99 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113396113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.144 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds