Wall clock time and date at job start Tue Mar 31 2020 03:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99880 * 2 1 4 4 H 1.48501 * 109.47069 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47291 * 299.99923 * 3 2 1 6 6 H 1.48499 * 109.47353 * 59.99886 * 3 2 1 7 7 C 1.38812 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99831 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99823 * 0.02562 * 7 2 1 10 10 S 1.65602 * 119.99915 * 179.97438 * 9 7 2 11 11 O 1.42101 * 106.40227 * 311.45840 * 10 9 7 12 12 O 1.42102 * 106.40091 * 178.53963 * 10 9 7 13 13 C 1.76200 * 107.21894 * 64.99774 * 10 9 7 14 14 C 1.39874 * 126.03785 * 270.00076 * 13 10 9 15 15 N 1.30841 * 108.19623 * 179.73763 * 14 13 10 16 16 N 1.40082 * 108.20814 * 0.40999 * 15 14 13 17 17 C 1.46503 * 126.03719 * 179.85633 * 16 15 14 18 18 H 1.09007 * 110.98591 * 28.87866 * 17 16 15 19 19 C 1.55300 * 111.12279 * 264.68513 * 17 16 15 20 20 C 1.54377 * 102.25502 * 207.90513 * 19 17 16 21 21 O 1.43245 * 107.58529 * 21.35358 * 20 19 17 22 22 C 1.43641 * 109.97106 * 1.71442 * 21 20 19 23 23 C 1.34941 * 107.92557 * 359.58406 * 16 15 14 24 24 H 0.97002 * 120.00375 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00347 * 359.97438 * 9 7 2 26 26 H 1.07992 * 125.90189 * 359.97438 * 14 13 10 27 27 H 1.09006 * 110.85287 * 89.71138 * 19 17 16 28 28 H 1.09007 * 110.84948 * 326.09707 * 19 17 16 29 29 H 1.09000 * 109.83189 * 261.84669 * 20 19 17 30 30 H 1.09004 * 109.91014 * 140.91129 * 20 19 17 31 31 H 1.08997 * 110.30942 * 94.48681 * 22 21 20 32 32 H 1.08999 * 110.30828 * 216.65652 * 22 21 20 33 33 H 1.07997 * 126.12877 * 180.26690 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 16 2.1536 -3.8222 0.0005 11 8 3.1358 -3.7184 -1.0211 12 8 1.1740 -4.8510 0.0353 13 6 3.0304 -3.9182 1.5259 14 6 4.3277 -3.4505 1.7602 15 7 4.6307 -3.6950 3.0093 16 7 3.5379 -4.3353 3.6076 17 6 3.4595 -4.7869 4.9991 18 1 4.0798 -4.1667 5.6463 19 6 3.8450 -6.2861 5.1236 20 6 3.0467 -6.7274 6.3690 21 8 1.9723 -5.7967 6.5466 22 6 1.9920 -4.8183 5.4951 23 6 2.5679 -4.4574 2.6775 24 1 -0.4851 0.8400 0.0004 25 1 0.3556 -2.3881 0.0005 26 1 4.9670 -2.9673 1.0363 27 1 4.9164 -6.3988 5.2896 28 1 3.5274 -6.8428 4.2419 29 1 3.6939 -6.7167 7.2460 30 1 2.6463 -7.7298 6.2173 31 1 1.3256 -5.1186 4.6865 32 1 1.7023 -3.8413 5.8820 33 1 1.5962 -4.9050 2.8258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116356442.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:45 Heat of formation + Delta-G solvation = -35.475173 kcal Electronic energy + Delta-G solvation = -20840.978661 eV Core-core repulsion = 17416.977852 eV Total energy + Delta-G solvation = -3424.000809 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.24521 -39.43753 -36.04650 -34.70252 -34.53525 -33.89902 -30.86928 -30.86280 -29.99094 -28.59252 -24.45589 -23.70122 -22.58149 -21.34195 -20.32618 -18.64652 -18.07898 -17.71229 -16.99627 -16.42542 -15.83951 -15.35394 -14.91874 -14.69539 -14.55233 -14.31556 -14.10103 -13.87553 -13.44424 -12.84373 -12.59037 -12.05174 -11.94152 -11.89299 -11.51401 -11.28143 -11.18020 -11.07306 -10.94914 -10.87055 -10.45952 -10.31474 -9.99191 -9.97791 -9.92589 -9.34374 -8.81946 -8.21295 -6.38619 -3.85215 1.59324 1.84468 2.33013 2.74210 3.20691 3.27431 3.30933 3.42219 3.98468 4.11243 4.17456 4.45372 4.51063 4.57704 4.68288 4.83763 4.86870 4.97913 5.19984 5.22553 5.30188 5.35925 5.43400 5.48320 5.59139 5.79995 6.17779 6.43980 6.71629 6.97452 7.09926 7.56607 7.69363 8.73426 8.88636 9.30551 10.78230 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.019528 B = 0.005179 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.483181 B = 5404.934663 C = 5861.197611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.030 3.970 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.281 4.281 8 H 0.103 0.897 9 N -0.956 5.956 10 S 2.663 3.337 11 O -0.973 6.973 12 O -1.007 7.007 13 C -0.786 4.786 14 C 0.137 3.863 15 N -0.302 5.302 16 N -0.364 5.364 17 C 0.125 3.875 18 H 0.122 0.878 19 C -0.168 4.168 20 C 0.052 3.948 21 O -0.372 6.372 22 C 0.042 3.958 23 C 0.158 3.842 24 H 0.271 0.729 25 H 0.410 0.590 26 H 0.195 0.805 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.059 -8.675 11.156 15.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.176 4.176 3 Si 0.747 3.253 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.418 4.418 8 H 0.120 0.880 9 N -0.710 5.710 10 S 2.750 3.250 11 O -0.963 6.963 12 O -0.996 6.996 13 C -0.879 4.879 14 C -0.052 4.052 15 N -0.121 5.121 16 N -0.144 5.144 17 C 0.021 3.979 18 H 0.140 0.860 19 C -0.207 4.207 20 C -0.025 4.025 21 O -0.291 6.291 22 C -0.035 4.035 23 C 0.008 3.992 24 H 0.081 0.919 25 H 0.246 0.754 26 H 0.212 0.788 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.942 -9.269 11.820 16.154 hybrid contribution -0.254 1.101 0.040 1.131 sum 5.688 -8.168 11.861 15.484 Atomic orbital electron populations 1.69693 1.05874 1.27840 1.49560 1.25159 0.95598 0.99221 0.97605 0.85965 0.79712 0.81807 0.77836 1.19145 1.20592 1.20873 1.19255 0.92043 0.82954 1.47573 0.87968 1.51526 1.16885 1.19161 1.83406 1.04118 0.72690 0.72965 0.75198 1.93471 1.61600 1.86982 1.54224 1.93415 1.60184 1.57793 1.88186 1.32690 1.09930 1.21433 1.23804 1.23533 0.93690 0.94865 0.93144 1.77328 1.08065 1.17289 1.09434 1.48829 1.11779 1.45138 1.08669 1.22950 0.99037 0.96132 0.79755 0.86044 1.23590 1.02702 0.94584 0.99821 1.23135 0.88538 0.93653 0.97135 1.88493 1.50919 1.41428 1.48225 1.23751 0.93972 0.94212 0.91602 1.22300 0.94518 0.94997 0.87375 0.91908 0.75436 0.78787 0.88670 0.89421 0.90459 0.90501 0.90548 0.87791 0.79914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.59 13.06 55.49 0.72 -22.87 16 2 C 0.03 0.77 5.50 -17.43 -0.10 0.67 16 3 Si 0.92 19.85 29.55 -169.99 -5.02 14.82 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.28 -7.03 9.63 -15.06 -0.15 -7.18 16 8 H 0.10 2.44 7.82 -52.49 -0.41 2.03 16 9 N -0.96 -22.57 5.75 31.50 0.18 -22.39 16 10 S 2.66 57.02 5.84 -107.50 -0.63 56.39 16 11 O -0.97 -23.09 17.57 -57.17 -1.00 -24.09 16 12 O -1.01 -22.60 17.85 -57.17 -1.02 -23.62 16 13 C -0.79 -14.78 6.09 -40.01 -0.24 -15.03 16 14 C 0.14 2.47 11.82 -17.36 -0.21 2.26 16 15 N -0.30 -5.22 12.58 30.62 0.39 -4.84 16 16 N -0.36 -5.48 3.68 -52.69 -0.19 -5.67 16 17 C 0.12 1.39 4.26 -65.69 -0.28 1.11 16 18 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 19 C -0.17 -1.52 6.72 -24.79 -0.17 -1.69 16 20 C 0.05 0.42 7.79 37.88 0.30 0.72 16 21 O -0.37 -3.98 11.36 -35.23 -0.40 -4.38 16 22 C 0.04 0.44 7.15 38.18 0.27 0.71 16 23 C 0.16 2.57 10.33 -17.23 -0.18 2.39 16 24 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 25 H 0.41 9.84 8.02 -34.47 -0.28 9.57 16 26 H 0.20 3.15 8.06 -52.49 -0.42 2.73 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.78 6.21 -51.93 -0.32 0.46 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.18 2.48 6.75 -52.49 -0.35 2.12 16 LS Contribution 301.87 15.07 4.55 4.55 Total: -1.00 -32.25 301.87 -6.63 -38.89 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.46 Total: 9.24 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -0.75 Total: -16.03 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 1.10 Total: -55.77 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -2.43 Total: -52.09 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 57.02 SS G_CDS: -0.63 Total: 56.39 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.25 -6.63 -38.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116356442.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.411 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds