Wall clock time and date at job start Tue Mar 31 2020 03:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00523 * 2 1 4 4 H 1.09004 * 109.57143 * 30.15146 * 3 2 1 5 5 C 1.53092 * 109.52118 * 270.00072 * 3 2 1 6 6 O 1.42905 * 109.42428 * 182.48752 * 5 3 2 7 7 C 1.42901 * 114.09770 * 61.14988 * 6 5 3 8 8 C 1.53095 * 109.41489 * 298.84274 * 7 6 5 9 9 C 1.53173 * 109.16329 * 57.60980 * 8 7 6 10 10 H 1.08999 * 109.54751 * 62.97322 * 9 8 7 11 11 C 1.53009 * 109.54412 * 183.15229 * 9 8 7 12 12 C 1.50697 * 109.46728 * 294.99915 * 11 9 8 13 13 O 1.21284 * 120.00488 * 359.97438 * 12 11 9 14 14 N 1.34779 * 119.99620 * 179.97438 * 12 11 9 15 15 C 1.46496 * 120.00231 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47436 * 180.02562 * 15 14 12 17 17 N 1.46496 * 109.47109 * 180.02562 * 16 15 14 18 18 C 1.36938 * 120.00113 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99536 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00407 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99442 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00124 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47178 * 90.00321 * 22 20 18 24 24 H 1.48499 * 109.47160 * 210.00203 * 22 20 18 25 25 H 1.48502 * 109.47155 * 330.00366 * 22 20 18 26 26 H 1.09000 * 109.47422 * 300.00575 * 1 2 3 27 27 H 1.09003 * 109.46953 * 60.00215 * 1 2 3 28 28 H 1.08997 * 109.47357 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.48343 * 62.49738 * 5 3 2 30 30 H 1.08999 * 109.47546 * 302.47332 * 5 3 2 31 31 H 1.09002 * 109.48282 * 58.82206 * 7 6 5 32 32 H 1.08997 * 109.48587 * 178.84728 * 7 6 5 33 33 H 1.09001 * 109.52141 * 177.51212 * 8 7 6 34 34 H 1.09000 * 109.52256 * 297.64026 * 8 7 6 35 35 H 1.08996 * 109.46558 * 54.99689 * 11 9 8 36 36 H 1.08993 * 109.46888 * 174.99383 * 11 9 8 37 37 H 0.97000 * 119.99928 * 0.02562 * 14 12 11 38 38 H 1.08995 * 109.47336 * 300.00445 * 15 14 12 39 39 H 1.09002 * 109.46595 * 60.00581 * 15 14 12 40 40 H 1.09005 * 109.46797 * 300.00053 * 16 15 14 41 41 H 1.08998 * 109.47197 * 60.00300 * 16 15 14 42 42 H 0.97000 * 120.00168 * 0.02562 * 17 16 15 43 43 H 0.97007 * 119.99902 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3475 2.0003 0.5159 5 6 2.2184 1.7727 -1.4429 6 8 2.8527 3.0533 -1.4409 7 6 4.1432 3.0642 -0.8273 8 6 4.0124 2.6490 0.6404 9 6 3.3642 1.2632 0.7151 10 1 4.0109 0.5315 0.2308 11 6 3.1574 0.8731 2.1801 12 6 4.4970 0.7226 2.8537 13 8 5.5168 0.9085 2.2241 14 7 4.5618 0.3814 4.1560 15 6 5.8640 0.2345 4.8108 16 6 5.6572 -0.1554 6.2758 17 7 6.9594 -0.3017 6.9307 18 6 7.0253 -0.6482 8.2539 19 1 6.1172 -0.8141 8.8144 20 6 8.2593 -0.7873 8.8744 21 7 9.3659 -0.5857 8.1910 22 14 8.3491 -1.2608 10.6791 23 1 8.3996 -2.7399 10.8009 24 1 9.5704 -0.6723 11.2850 25 1 7.1487 -0.7466 11.3861 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.2532 1.8459 -1.9441 30 1 2.8482 1.0559 -1.9698 31 1 4.7983 2.3642 -1.3460 32 1 4.5648 4.0677 -0.8852 33 1 5.0008 2.6140 1.0986 34 1 3.3911 3.3717 1.1694 35 1 2.5820 1.6491 2.6848 36 1 2.6165 -0.0717 2.2316 37 1 3.7462 0.2324 4.6595 38 1 6.4389 -0.5419 4.3063 39 1 6.4053 1.1792 4.7589 40 1 5.0821 0.6209 6.7806 41 1 5.1160 -1.1001 6.3274 42 1 7.7750 -0.1523 6.4273 43 1 10.2282 -0.6825 8.6246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129207657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:04 Heat of formation + Delta-G solvation = -127.056615 kcal Electronic energy + Delta-G solvation = -22730.438143 eV Core-core repulsion = 19196.805293 eV Total energy + Delta-G solvation = -3533.632849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.48690 -39.21381 -37.60688 -35.80428 -34.37025 -33.82037 -31.32153 -30.70536 -29.43360 -27.39054 -26.98036 -24.25058 -23.40002 -23.12306 -21.47309 -20.66021 -20.07539 -17.46729 -17.29780 -16.90017 -16.60083 -16.13088 -15.80621 -15.54793 -15.28393 -15.02330 -14.56070 -14.51713 -13.95697 -13.79761 -13.32669 -13.22067 -13.09120 -12.94244 -12.66506 -12.47091 -11.98171 -11.66499 -11.37713 -11.22623 -11.11829 -10.99396 -10.82397 -10.81499 -10.72076 -10.36129 -10.12980 -9.87593 -9.73164 -9.39996 -8.98516 -8.81396 -7.00682 -5.80765 -3.11536 2.73787 3.17303 3.27516 3.41512 3.46567 3.48428 3.73772 4.34804 4.35435 4.50572 4.57729 4.72417 4.79649 4.92515 4.97541 4.97995 5.07127 5.16569 5.25087 5.29485 5.37518 5.41581 5.49072 5.52383 5.58175 5.63368 5.74263 5.78053 5.95320 6.00499 6.03947 6.15856 6.50015 6.64868 6.69614 6.74825 6.97163 7.62924 7.64742 8.33786 8.37321 9.48125 10.02972 10.37682 11.41874 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.034571 B = 0.002514 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.736204 B =11136.348618 C =11748.527417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.378 6.378 3 C 0.060 3.940 4 H 0.071 0.929 5 C 0.043 3.957 6 O -0.381 6.381 7 C 0.058 3.942 8 C -0.155 4.155 9 C -0.069 4.069 10 H 0.090 0.910 11 C -0.134 4.134 12 C 0.511 3.489 13 O -0.541 6.541 14 N -0.724 5.724 15 C 0.110 3.890 16 C 0.145 3.855 17 N -0.730 5.730 18 C -0.244 4.244 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.399 0.601 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.386 0.614 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.359 5.121 -18.906 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.296 6.296 3 C 0.001 3.999 4 H 0.089 0.911 5 C -0.035 4.035 6 O -0.299 6.299 7 C -0.018 4.018 8 C -0.192 4.192 9 C -0.088 4.088 10 H 0.108 0.892 11 C -0.174 4.174 12 C 0.297 3.703 13 O -0.419 6.419 14 N -0.376 5.376 15 C -0.013 4.013 16 C 0.017 3.983 17 N -0.375 5.375 18 C -0.375 4.375 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.233 0.767 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.220 0.780 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.616 5.213 -19.251 27.282 hybrid contribution -0.166 -0.394 1.317 1.385 sum -18.781 4.818 -17.934 26.412 Atomic orbital electron populations 1.22840 0.80945 1.02960 1.00086 1.87941 1.19713 1.27013 1.94974 1.22865 0.95356 0.85093 0.96549 0.91140 1.22991 0.98530 0.85931 0.96022 1.87935 1.32494 1.29825 1.79687 1.22678 0.84343 1.02460 0.92351 1.22424 1.03916 0.95260 0.97632 1.21024 0.94820 0.98706 0.94208 0.89215 1.21665 0.95622 1.04312 0.95802 1.20576 0.91416 0.76467 0.81835 1.90665 1.36896 1.50240 1.64098 1.45978 1.10104 1.70598 1.10874 1.21566 0.83983 1.01965 0.93804 1.20755 0.90687 0.97762 0.89145 1.42196 1.01628 1.84146 1.09528 1.19193 0.92520 1.39477 0.86338 0.91043 1.24785 0.95312 1.02354 0.98413 1.69670 0.96858 1.55633 1.35733 0.86142 0.77005 0.78105 0.84621 1.21610 1.21671 1.20707 0.93803 0.94044 0.89417 0.88992 0.92186 0.92696 0.88495 0.87837 0.91395 0.89153 0.88102 0.76711 0.91347 0.91349 0.95861 0.95833 0.78007 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.38 9.75 -35.23 -0.34 -3.72 16 3 C 0.06 0.51 2.21 -26.59 -0.06 0.46 16 4 H 0.07 0.55 7.79 -51.93 -0.40 0.15 16 5 C 0.04 0.37 6.46 37.20 0.24 0.61 16 6 O -0.38 -3.89 10.77 -35.23 -0.38 -4.27 16 7 C 0.06 0.54 6.84 37.21 0.25 0.80 16 8 C -0.15 -1.56 5.12 -26.59 -0.14 -1.70 16 9 C -0.07 -0.69 1.64 -90.43 -0.15 -0.84 16 10 H 0.09 1.07 7.96 -51.93 -0.41 0.66 16 11 C -0.13 -1.29 5.12 -27.88 -0.14 -1.44 16 12 C 0.51 6.90 7.57 -10.99 -0.08 6.81 16 13 O -0.54 -9.24 13.98 5.55 0.08 -9.16 16 14 N -0.72 -9.65 5.56 -60.30 -0.33 -9.99 16 15 C 0.11 1.89 5.79 -4.04 -0.02 1.87 16 16 C 0.14 2.83 6.37 -4.04 -0.03 2.81 16 17 N -0.73 -18.63 5.60 -59.91 -0.34 -18.97 16 18 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 22 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H 0.04 0.22 8.09 -51.93 -0.42 -0.20 16 27 H 0.04 0.20 7.93 -51.93 -0.41 -0.21 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.65 7.93 -51.93 -0.41 0.24 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.27 6.04 -51.93 -0.31 0.95 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.90 7.66 -51.93 -0.40 0.50 16 37 H 0.40 4.16 8.47 -40.82 -0.35 3.82 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.39 10.43 7.67 -40.82 -0.31 10.12 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 350.13 15.07 5.28 5.28 Total: -1.00 -33.30 350.13 -6.82 -40.12 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.21 Total: 7.85 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 0.72 Total: 3.19 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.05 Total: -56.58 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.65 Total: -17.15 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.30 -6.82 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129207657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.936 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds