Wall clock time and date at job start Tue Mar 31 2020 03:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00523 * 2 1 4 4 H 1.09004 * 109.57143 * 30.15146 * 3 2 1 5 5 C 1.53092 * 109.52118 * 270.00072 * 3 2 1 6 6 O 1.42905 * 109.42428 * 182.48752 * 5 3 2 7 7 C 1.42901 * 114.09770 * 61.14988 * 6 5 3 8 8 C 1.53095 * 109.41489 * 298.84274 * 7 6 5 9 9 C 1.53173 * 109.16329 * 57.60980 * 8 7 6 10 10 H 1.08999 * 109.54751 * 62.97322 * 9 8 7 11 11 C 1.53009 * 109.54412 * 183.15229 * 9 8 7 12 12 C 1.50697 * 109.46728 * 294.99915 * 11 9 8 13 13 O 1.21284 * 120.00488 * 359.97438 * 12 11 9 14 14 N 1.34779 * 119.99620 * 179.97438 * 12 11 9 15 15 C 1.46496 * 120.00231 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47436 * 180.02562 * 15 14 12 17 17 N 1.46496 * 109.47109 * 180.02562 * 16 15 14 18 18 C 1.36938 * 120.00113 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99536 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00407 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99442 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00124 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47178 * 90.00321 * 22 20 18 24 24 H 1.48499 * 109.47160 * 210.00203 * 22 20 18 25 25 H 1.48502 * 109.47155 * 330.00366 * 22 20 18 26 26 H 1.09000 * 109.47422 * 300.00575 * 1 2 3 27 27 H 1.09003 * 109.46953 * 60.00215 * 1 2 3 28 28 H 1.08997 * 109.47357 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.48343 * 62.49738 * 5 3 2 30 30 H 1.08999 * 109.47546 * 302.47332 * 5 3 2 31 31 H 1.09002 * 109.48282 * 58.82206 * 7 6 5 32 32 H 1.08997 * 109.48587 * 178.84728 * 7 6 5 33 33 H 1.09001 * 109.52141 * 177.51212 * 8 7 6 34 34 H 1.09000 * 109.52256 * 297.64026 * 8 7 6 35 35 H 1.08996 * 109.46558 * 54.99689 * 11 9 8 36 36 H 1.08993 * 109.46888 * 174.99383 * 11 9 8 37 37 H 0.97000 * 119.99928 * 0.02562 * 14 12 11 38 38 H 1.08995 * 109.47336 * 300.00445 * 15 14 12 39 39 H 1.09002 * 109.46595 * 60.00581 * 15 14 12 40 40 H 1.09005 * 109.46797 * 300.00053 * 16 15 14 41 41 H 1.08998 * 109.47197 * 60.00300 * 16 15 14 42 42 H 0.97000 * 120.00168 * 0.02562 * 17 16 15 43 43 H 0.97007 * 119.99902 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3475 2.0003 0.5159 5 6 2.2184 1.7727 -1.4429 6 8 2.8527 3.0533 -1.4409 7 6 4.1432 3.0642 -0.8273 8 6 4.0124 2.6490 0.6404 9 6 3.3642 1.2632 0.7151 10 1 4.0109 0.5315 0.2308 11 6 3.1574 0.8731 2.1801 12 6 4.4970 0.7226 2.8537 13 8 5.5168 0.9085 2.2241 14 7 4.5618 0.3814 4.1560 15 6 5.8640 0.2345 4.8108 16 6 5.6572 -0.1554 6.2758 17 7 6.9594 -0.3017 6.9307 18 6 7.0253 -0.6482 8.2539 19 1 6.1172 -0.8141 8.8144 20 6 8.2593 -0.7873 8.8744 21 7 9.3659 -0.5857 8.1910 22 14 8.3491 -1.2608 10.6791 23 1 8.3996 -2.7399 10.8009 24 1 9.5704 -0.6723 11.2850 25 1 7.1487 -0.7466 11.3861 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.2532 1.8459 -1.9441 30 1 2.8482 1.0559 -1.9698 31 1 4.7983 2.3642 -1.3460 32 1 4.5648 4.0677 -0.8852 33 1 5.0008 2.6140 1.0986 34 1 3.3911 3.3717 1.1694 35 1 2.5820 1.6491 2.6848 36 1 2.6165 -0.0717 2.2316 37 1 3.7462 0.2324 4.6595 38 1 6.4389 -0.5419 4.3063 39 1 6.4053 1.1792 4.7589 40 1 5.0821 0.6209 6.7806 41 1 5.1160 -1.1001 6.3274 42 1 7.7750 -0.1523 6.4273 43 1 10.2282 -0.6825 8.6246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129207657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:04 Heat of formation + Delta-G solvation = -152.771437 kcal Electronic energy + Delta-G solvation = -22731.553221 eV Core-core repulsion = 19196.805293 eV Total energy + Delta-G solvation = -3534.747928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35657 -40.20273 -38.25221 -37.36693 -35.56177 -35.13751 -33.18617 -31.42604 -30.54478 -28.83734 -27.46496 -25.78216 -24.44723 -24.08623 -23.03577 -21.56777 -21.05490 -19.32945 -18.27321 -17.73575 -17.36106 -17.08766 -16.82548 -16.69557 -16.36806 -16.16155 -15.86834 -15.51443 -15.21796 -15.01510 -14.82054 -14.54936 -14.13308 -13.86159 -13.50349 -13.31993 -13.05144 -13.02145 -12.68936 -12.54781 -12.49630 -12.25368 -12.08865 -12.00574 -11.86810 -11.73506 -11.42159 -11.05083 -10.99956 -10.84833 -10.19448 -10.06896 -9.07884 -7.97942 -5.29503 1.47971 1.50472 1.58906 1.65796 2.12514 2.56486 2.58300 3.06828 3.36382 3.56847 3.60772 3.79681 3.93203 4.02126 4.07070 4.16308 4.21212 4.21949 4.31628 4.42094 4.47936 4.52456 4.58189 4.60406 4.72901 4.75000 4.82485 4.85419 4.93132 5.01876 5.04214 5.12936 5.18920 5.24523 5.42623 5.49363 6.01104 6.22996 6.32947 6.57645 7.27923 7.29129 8.01014 8.23869 9.25868 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.034571 B = 0.002514 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.736204 B =11136.348618 C =11748.527417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.396 6.396 3 C 0.068 3.932 4 H 0.086 0.914 5 C 0.039 3.961 6 O -0.390 6.390 7 C 0.058 3.942 8 C -0.150 4.150 9 C -0.070 4.070 10 H 0.063 0.937 11 C -0.121 4.121 12 C 0.508 3.492 13 O -0.581 6.581 14 N -0.714 5.714 15 C 0.128 3.872 16 C 0.149 3.851 17 N -0.748 5.748 18 C -0.248 4.248 19 H 0.083 0.917 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 0.980 3.020 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.265 1.265 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.417 0.583 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.038 0.962 41 H 0.036 0.964 42 H 0.373 0.627 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.211 5.272 -18.471 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.316 6.316 3 C 0.010 3.990 4 H 0.104 0.896 5 C -0.038 4.038 6 O -0.309 6.309 7 C -0.018 4.018 8 C -0.188 4.188 9 C -0.089 4.089 10 H 0.082 0.918 11 C -0.161 4.161 12 C 0.296 3.704 13 O -0.461 6.461 14 N -0.367 5.367 15 C 0.003 3.997 16 C 0.022 3.978 17 N -0.392 5.392 18 C -0.380 4.380 19 H 0.101 0.899 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.808 3.192 23 H -0.213 1.213 24 H -0.223 1.223 25 H -0.190 1.190 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.128 0.872 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.254 0.746 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.205 0.795 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -21.559 5.358 -18.818 29.114 hybrid contribution 0.643 -0.450 1.096 1.348 sum -20.916 4.908 -17.721 27.850 Atomic orbital electron populations 1.23040 0.79324 1.03942 1.01189 1.87921 1.21520 1.27042 1.95071 1.22731 0.94531 0.85481 0.96234 0.89619 1.23111 0.99098 0.85222 0.96385 1.87920 1.32597 1.30659 1.79744 1.22695 0.84261 1.03008 0.91876 1.22329 1.02751 0.95723 0.97968 1.20999 0.95520 0.97874 0.94526 0.91802 1.21661 0.93244 1.06038 0.95156 1.21320 0.92490 0.75172 0.81420 1.90663 1.38727 1.51793 1.64922 1.45805 1.09295 1.70496 1.11062 1.21108 0.85616 1.00394 0.92578 1.20852 0.88309 0.98601 0.90025 1.42446 1.03305 1.84187 1.09216 1.19657 0.92905 1.37971 0.87460 0.89886 1.25689 0.95094 1.03280 1.02936 1.69840 0.97229 1.57595 1.37529 0.85047 0.77111 0.77611 0.79404 1.21271 1.22275 1.18970 0.92627 0.93002 0.88605 0.87161 0.92973 0.93323 0.87337 0.90325 0.90218 0.86234 0.86633 0.74641 0.93221 0.92929 0.94436 0.94581 0.79495 0.93879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.82 113.37 1.23 1.42 16 2 O -0.40 -6.23 9.75 -148.98 -1.45 -7.68 16 3 C 0.07 1.04 2.21 30.68 0.07 1.11 16 4 H 0.09 1.06 7.79 -2.38 -0.02 1.04 16 5 C 0.04 0.61 6.46 72.01 0.47 1.08 16 6 O -0.39 -7.47 10.77 -148.98 -1.60 -9.07 16 7 C 0.06 1.06 6.84 72.01 0.49 1.56 16 8 C -0.15 -2.94 5.12 30.68 0.16 -2.78 16 9 C -0.07 -1.34 1.64 -10.67 -0.02 -1.36 16 10 H 0.06 1.56 7.96 -2.39 -0.02 1.54 16 11 C -0.12 -2.08 5.12 29.85 0.15 -1.93 16 12 C 0.51 13.27 7.57 87.66 0.66 13.93 16 13 O -0.58 -20.22 13.98 -3.04 -0.04 -20.27 16 14 N -0.71 -18.03 5.56 -463.07 -2.57 -20.60 16 15 C 0.13 4.37 5.79 86.38 0.50 4.87 16 16 C 0.15 5.67 6.37 86.38 0.55 6.22 16 17 N -0.75 -38.26 5.60 -343.45 -1.92 -40.19 16 18 C -0.25 -13.78 9.99 84.03 0.84 -12.94 16 19 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 20 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 21 N -0.97 -60.21 13.06 21.65 0.28 -59.93 16 22 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H 0.06 0.38 8.09 -2.39 -0.02 0.36 16 27 H 0.05 0.36 7.93 -2.39 -0.02 0.34 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.11 1.31 7.93 -2.39 -0.02 1.30 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 1.97 6.04 -2.39 -0.01 1.96 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.12 1.71 7.66 -2.39 -0.02 1.70 16 37 H 0.42 7.59 8.47 -92.71 -0.79 6.81 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 42 H 0.37 20.68 7.67 -92.71 -0.71 19.97 16 43 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -72.11 350.13 -0.21 -72.32 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -0.49 Total: 30.49 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 5.57 Total: 7.17 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -4.21 Total: -120.72 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -3.10 Total: -37.02 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -72.11 -0.21 -72.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129207657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.454 kcal (2) G-P(sol) polarization free energy of solvation -72.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds