Wall clock time and date at job start Tue Mar 31 2020 02:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00237 * 2 1 4 4 C 1.52996 * 109.47348 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47200 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00435 * 0.02562 * 5 4 3 7 7 N 1.34782 * 120.00255 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00387 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47009 * 179.97438 * 8 7 5 10 10 H 1.09003 * 108.56929 * 57.94550 * 9 8 7 11 11 C 1.46920 * 108.61866 * 175.75803 * 9 8 7 12 12 N 1.50106 * 106.77883 * 177.92053 * 11 9 8 13 13 C 1.36943 * 120.63842 * 111.32625 * 12 11 9 14 14 H 1.07999 * 119.99262 * 320.51769 * 13 12 11 15 15 C 1.38810 * 120.00330 * 140.52331 * 13 12 11 16 16 N 1.31610 * 120.00178 * 156.55630 * 15 13 12 17 17 Si 1.86801 * 119.99714 * 336.54682 * 15 13 12 18 18 H 1.48507 * 109.46743 * 95.55775 * 17 15 13 19 19 H 1.48498 * 109.47322 * 215.55350 * 17 15 13 20 20 H 1.48501 * 109.47628 * 335.55935 * 17 15 13 21 21 C 1.43430 * 118.72824 * 291.34343 * 12 11 9 22 22 C 1.55323 * 116.23614 * 89.35664 * 21 12 11 23 23 C 1.55190 * 108.87794 * 319.46516 * 22 21 12 24 24 O 1.39645 * 110.56764 * 322.14580 * 23 22 21 25 25 H 1.09005 * 109.47277 * 60.00018 * 1 2 3 26 26 H 1.09003 * 109.47334 * 300.00654 * 1 2 3 27 27 H 1.08998 * 109.47764 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47146 * 300.00190 * 3 2 1 29 29 H 1.09003 * 109.46672 * 59.99613 * 3 2 1 30 30 H 1.09000 * 109.46989 * 300.00564 * 4 3 2 31 31 H 1.09003 * 109.46728 * 60.00230 * 4 3 2 32 32 H 0.97005 * 119.99261 * 359.97438 * 7 5 4 33 33 H 1.08992 * 109.46700 * 299.99886 * 8 7 5 34 34 H 1.09003 * 109.46746 * 59.99521 * 8 7 5 35 35 H 1.09000 * 109.98723 * 297.24136 * 11 9 8 36 36 H 1.09007 * 109.98830 * 58.60082 * 11 9 8 37 37 H 0.97004 * 120.00353 * 180.02562 * 16 15 13 38 38 H 1.08994 * 108.12631 * 327.59697 * 21 12 11 39 39 H 1.08998 * 107.96211 * 210.98730 * 21 12 11 40 40 H 1.09001 * 109.57254 * 199.64764 * 22 21 12 41 41 H 1.09001 * 109.57712 * 79.28283 * 22 21 12 42 42 H 1.08999 * 109.26223 * 201.86849 * 23 22 21 43 43 H 1.09003 * 109.25843 * 82.42012 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1484 2.5613 0.0013 6 8 3.4356 3.5425 0.0017 7 7 5.4888 2.7022 0.0014 8 6 6.0847 4.0405 0.0026 9 6 7.6099 3.9196 0.0031 10 1 7.9130 3.3461 -0.8729 11 6 8.1873 5.2668 -0.0987 12 7 9.6785 5.1045 -0.0427 13 6 10.4500 5.3577 -1.1454 14 1 10.1061 5.0597 -2.1249 15 6 11.6740 5.9971 -1.0043 16 7 12.6061 5.8435 -1.9206 17 14 11.9979 7.0756 0.4860 18 1 12.7051 6.2847 1.5251 19 1 12.8391 8.2323 0.0866 20 1 10.7071 7.5672 1.0314 21 6 10.2799 4.6788 1.1879 22 6 10.4239 3.1452 1.3873 23 6 9.1390 2.4482 0.8661 24 8 8.0094 3.2103 1.1712 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8464 -0.8900 29 1 1.6885 1.8463 0.8900 30 1 3.8567 0.6438 0.8908 31 1 3.8574 0.6436 -0.8892 32 1 6.0589 1.9174 0.0014 33 1 5.7631 4.5821 -0.8869 34 1 5.7630 4.5806 0.8930 35 1 7.8976 5.7258 -1.0439 36 1 7.8477 5.8817 0.7349 37 1 13.4616 6.2900 -1.8219 38 1 9.6840 5.0733 2.0108 39 1 11.2733 5.1234 1.2480 40 1 10.5543 2.9254 2.4469 41 1 11.2874 2.7837 0.8288 42 1 9.0476 1.4673 1.3326 43 1 9.2093 2.3265 -0.2148 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148969659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:48 Heat of formation + Delta-G solvation = -122.204316 kcal Electronic energy + Delta-G solvation = -23325.741890 eV Core-core repulsion = 19792.319452 eV Total energy + Delta-G solvation = -3533.422438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21929 -40.40106 -38.70024 -37.05851 -36.02100 -33.89981 -33.68061 -32.67922 -30.47140 -27.92382 -27.26096 -26.95929 -24.80211 -23.61857 -22.54971 -21.86938 -21.19714 -18.86929 -18.47816 -17.67832 -17.51651 -17.26329 -17.19859 -16.80199 -16.14699 -16.05564 -15.89477 -15.69175 -15.44258 -14.93959 -14.52193 -14.34355 -14.22416 -14.00695 -13.77379 -13.66156 -13.14385 -12.86696 -12.72473 -12.64473 -12.37629 -12.33467 -12.13484 -12.02407 -11.74839 -11.62848 -11.32441 -11.05005 -10.66832 -10.60832 -10.43235 -10.10163 -8.76153 -8.24515 -5.64787 1.28813 1.38968 1.50028 1.60979 2.01526 2.39309 2.92652 2.94972 3.04474 3.22348 3.75407 3.95676 4.01744 4.05661 4.19142 4.21961 4.27852 4.39334 4.52737 4.52989 4.54976 4.56407 4.58301 4.67481 4.72863 4.80023 4.84684 4.85876 4.86812 4.98112 5.08464 5.11736 5.17262 5.27181 5.40467 5.92094 6.12970 6.15040 6.30254 6.52833 6.95444 7.21162 7.57541 8.05383 8.94399 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.038521 B = 0.003081 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.698921 B = 9084.539325 C = 9302.593463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.078 3.922 4 C -0.131 4.131 5 C 0.516 3.484 6 O -0.588 6.588 7 N -0.710 5.710 8 C 0.126 3.874 9 C 0.074 3.926 10 H 0.068 0.932 11 C 0.110 3.890 12 N -0.611 5.611 13 C -0.257 4.257 14 H 0.047 0.953 15 C -0.010 4.010 16 N -0.940 5.940 17 Si 0.938 3.062 18 H -0.279 1.279 19 H -0.307 1.307 20 H -0.265 1.265 21 C 0.143 3.857 22 C -0.167 4.167 23 C 0.069 3.931 24 O -0.355 6.355 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.103 0.897 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.415 0.585 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.264 0.736 38 H 0.042 0.958 39 H 0.018 0.982 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.099 0.901 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.399 -12.449 6.191 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.000 4.000 4 C -0.171 4.171 5 C 0.304 3.696 6 O -0.469 6.469 7 N -0.361 5.361 8 C 0.001 3.999 9 C 0.014 3.986 10 H 0.086 0.914 11 C -0.014 4.014 12 N -0.335 5.335 13 C -0.387 4.387 14 H 0.065 0.935 15 C -0.208 4.208 16 N -0.583 5.583 17 Si 0.767 3.233 18 H -0.206 1.206 19 H -0.235 1.235 20 H -0.189 1.189 21 C 0.016 3.984 22 C -0.208 4.208 23 C -0.009 4.009 24 O -0.273 6.273 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.252 0.748 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.036 0.964 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.117 0.883 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.726 -11.834 6.313 23.034 hybrid contribution 1.091 0.849 0.153 1.391 sum -17.635 -10.985 6.466 21.759 Atomic orbital electron populations 1.22940 0.79299 1.04038 1.00771 1.87768 1.21591 1.27922 1.95634 1.22104 0.92619 0.84153 1.01081 1.21432 0.94606 0.93462 1.07554 1.20858 0.82143 0.91707 0.74894 1.90700 1.61888 1.42409 1.51914 1.45794 1.06522 1.09593 1.74236 1.21453 0.90829 0.84914 1.02670 1.21710 0.92656 0.95727 0.88490 0.91380 1.21206 0.83026 0.95546 1.01606 1.44213 1.02385 1.76943 1.09938 1.18593 1.00028 1.32352 0.87704 0.93527 1.26059 0.96726 0.98767 0.99252 1.69981 1.05081 1.44657 1.38589 0.85930 0.77732 0.79061 0.80596 1.20593 1.23532 1.18943 1.20729 0.95726 0.94093 0.87820 1.23456 0.98628 0.97460 1.01212 1.22461 0.84738 0.93977 0.99680 1.87613 1.44701 1.61124 1.33844 0.93433 0.93423 0.87881 0.93137 0.93191 0.86111 0.86043 0.74849 0.90147 0.91504 0.90015 0.93041 0.92720 0.93972 0.96407 0.90166 0.93036 0.88347 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -7.46 10.70 -148.98 -1.59 -9.05 16 3 C 0.08 1.43 5.23 71.98 0.38 1.81 16 4 C -0.13 -2.07 6.07 29.85 0.18 -1.89 16 5 C 0.52 11.73 7.83 87.65 0.69 12.41 16 6 O -0.59 -18.22 15.98 -3.03 -0.05 -18.27 16 7 N -0.71 -15.01 5.43 -463.07 -2.52 -17.53 16 8 C 0.13 3.21 5.24 86.38 0.45 3.67 16 9 C 0.07 2.15 2.10 28.71 0.06 2.21 16 10 H 0.07 2.05 6.77 -2.39 -0.02 2.03 16 11 C 0.11 3.95 5.58 83.79 0.47 4.42 16 12 N -0.61 -27.37 2.16 -706.03 -1.52 -28.89 16 13 C -0.26 -13.90 9.93 84.03 0.83 -13.07 16 14 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 15 C -0.01 -0.59 5.27 84.86 0.45 -0.14 16 16 N -0.94 -57.11 13.97 21.65 0.30 -56.80 16 17 Si 0.94 46.00 25.24 68.60 1.73 47.73 16 18 H -0.28 -13.21 6.74 99.48 0.67 -12.54 16 19 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 20 H -0.26 -12.64 7.11 99.48 0.71 -11.94 16 21 C 0.14 5.97 4.31 87.74 0.38 6.35 16 22 C -0.17 -5.69 6.75 32.14 0.22 -5.48 16 23 C 0.07 1.96 6.38 72.73 0.46 2.42 16 24 O -0.35 -10.34 9.54 -137.24 -1.31 -11.65 16 25 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 29 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 30 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.41 6.90 8.33 -92.70 -0.77 6.13 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 2.90 8.00 -2.39 -0.02 2.88 16 36 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.04 1.66 7.99 -2.39 -0.02 1.64 16 39 H 0.02 0.83 3.44 -2.39 -0.01 0.83 16 40 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.05 1.50 6.66 -2.39 -0.02 1.48 16 Total: -1.00 -69.24 342.96 1.04 -68.20 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.19 Total: 11.98 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 5.81 Total: 14.28 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -3.74 Total: -103.22 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -2.95 Total: -38.97 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.73 Total: 47.73 kcal Total: -69.24 1.04 -68.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148969659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.008 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds