Wall clock time and date at job start Tue Mar 31 2020 02:44:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42900 * 109.47084 * 2 1
4 4 C 1.42896 * 114.00070 * 179.97438 * 3 2 1
5 5 C 1.50698 * 109.47559 * 179.97438 * 4 3 2
6 6 O 1.21282 * 119.99715 * 0.02562 * 5 4 3
7 7 N 1.34772 * 120.00564 * 179.97438 * 5 4 3
8 8 C 1.46497 * 120.00390 * 179.97438 * 7 5 4
9 9 C 1.53001 * 109.47194 * 180.02562 * 8 7 5
10 10 H 1.08999 * 108.57158 * 60.00237 * 9 8 7
11 11 C 1.46916 * 108.61875 * 177.94951 * 9 8 7
12 12 N 1.50102 * 106.78328 * 178.04502 * 11 9 8
13 13 C 1.36933 * 120.75360 * 111.17476 * 12 11 9
14 14 H 1.07999 * 120.00084 * 155.71262 * 13 12 11
15 15 C 1.38807 * 120.00113 * 335.71486 * 13 12 11
16 16 N 1.31623 * 119.99784 * 340.86547 * 15 13 12
17 17 Si 1.86796 * 120.00336 * 160.86760 * 15 13 12
18 18 H 1.48498 * 109.47241 * 90.00266 * 17 15 13
19 19 H 1.48502 * 109.47151 * 210.00004 * 17 15 13
20 20 H 1.48500 * 109.47405 * 330.00007 * 17 15 13
21 21 C 1.43433 * 118.61123 * 291.14677 * 12 11 9
22 22 C 1.55329 * 116.23555 * 89.40834 * 21 12 11
23 23 C 1.55198 * 108.87152 * 319.46481 * 22 21 12
24 24 O 1.39637 * 110.56776 * 322.14183 * 23 22 21
25 25 H 1.09006 * 109.47068 * 60.00298 * 1 2 3
26 26 H 1.09004 * 109.47317 * 179.97438 * 1 2 3
27 27 H 1.08997 * 109.47731 * 300.00370 * 1 2 3
28 28 H 1.09008 * 109.46725 * 119.99306 * 2 1 3
29 29 H 1.08999 * 109.47330 * 239.99287 * 2 1 3
30 30 H 1.09000 * 109.47315 * 299.99810 * 4 3 2
31 31 H 1.09001 * 109.47353 * 59.99220 * 4 3 2
32 32 H 0.97005 * 119.99489 * 0.02562 * 7 5 4
33 33 H 1.08990 * 109.47121 * 300.00551 * 8 7 5
34 34 H 1.09002 * 109.46872 * 60.00347 * 8 7 5
35 35 H 1.09006 * 109.99057 * 297.23307 * 11 9 8
36 36 H 1.08997 * 109.99568 * 58.60192 * 11 9 8
37 37 H 0.97001 * 120.00108 * 180.02562 * 16 15 13
38 38 H 1.09001 * 108.12822 * 327.65225 * 21 12 11
39 39 H 1.08993 * 107.96520 * 211.03850 * 21 12 11
40 40 H 1.08998 * 109.57407 * 199.64911 * 22 21 12
41 41 H 1.09003 * 109.57499 * 79.28003 * 22 21 12
42 42 H 1.08996 * 109.25235 * 201.86237 * 23 22 21
43 43 H 1.08999 * 109.25439 * 82.42792 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4308 1.4601 0.0006
5 6 3.8195 2.9161 -0.0001
6 8 2.9610 3.7729 -0.0005
7 7 5.1209 3.2663 0.0008
8 6 5.4987 4.6817 -0.0004
9 6 7.0239 4.8025 0.0003
10 1 7.4113 4.3140 -0.8938
11 6 7.3817 6.2265 -0.0508
12 7 8.8801 6.2991 0.0007
13 6 9.5992 6.7077 -1.0906
14 1 10.5849 7.1296 -0.9606
15 6 9.0614 6.5797 -2.3638
16 7 8.0622 5.7495 -2.5757
17 14 9.7556 7.5856 -3.7765
18 1 10.8508 6.8272 -4.4327
19 1 8.6813 7.8584 -4.7647
20 1 10.2867 8.8706 -3.2551
21 6 9.5441 5.9318 1.2179
22 6 9.9283 4.4340 1.3655
23 6 8.7677 3.5617 0.8172
24 8 7.5330 4.1257 1.1449
25 1 -0.3633 0.5138 -0.8901
26 1 -0.3634 -1.0277 -0.0005
27 1 -0.3634 0.5139 0.8899
28 1 1.8933 -0.5138 0.8901
29 1 1.8934 -0.5139 -0.8899
30 1 3.8332 0.9768 0.8908
31 1 3.8340 0.9764 -0.8891
32 1 5.8075 2.5810 0.0015
33 1 5.0968 5.1642 -0.8912
34 1 5.0950 5.1662 0.8886
35 1 7.0209 6.6683 -0.9797
36 1 6.9519 6.7497 0.8034
37 1 7.6866 5.6598 -3.4655
38 1 8.8955 6.1994 2.0521
39 1 10.4552 6.5249 1.2960
40 1 10.0942 4.2016 2.4174
41 1 10.8364 4.2323 0.7975
42 1 8.8330 2.5634 1.2498
43 1 8.8536 3.4894 -0.2669
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001149074829.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:44:14
Heat of formation + Delta-G solvation = -97.900918 kcal
Electronic energy + Delta-G solvation = -23733.216663 eV
Core-core repulsion = 20200.848100 eV
Total energy + Delta-G solvation = -3532.368564 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-39.68653 -38.85011 -37.57666 -35.03106 -34.46995 -32.24679 -31.69265 -31.16466
-28.94973 -27.60076 -25.36821 -24.95419 -22.96941 -22.52754 -20.81481 -20.16764
-19.60716 -17.27963 -17.04086 -16.75277 -16.51910 -15.97594 -15.32356 -14.86780
-14.82136 -14.54447 -14.25427 -13.91727 -13.49611 -13.32543 -12.99726 -12.79001
-12.57488 -12.51585 -12.22990 -11.95539 -11.56144 -11.41527 -11.40554 -11.22394
-10.85668 -10.74805 -10.51122 -10.18154 -9.98370 -9.83001 -9.71445 -9.57439
-9.49664 -8.82420 -8.68051 -8.52100 -6.83835 -5.94052 -3.32492 2.86269
2.96757 3.31668 3.40351 3.42833 4.04039 4.42261 4.66974 4.82447
4.85012 5.04954 5.09802 5.14533 5.15090 5.22713 5.26817 5.45063
5.69970 5.70188 5.79764 5.90113 5.92266 5.99910 6.12559 6.31182
6.40015 6.46289 6.55088 6.64861 6.68724 6.79394 6.87079 6.93500
6.98530 7.10269 7.31442 7.70141 7.80850 8.11090 8.30466 8.49865
9.05330 9.73502 10.27877 11.15190
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.021122 B = 0.003835 C = 0.003448
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1325.283524 B = 7298.700709 C = 8118.053856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.055 3.945
3 O -0.364 6.364
4 C 0.045 3.955
5 C 0.509 3.491
6 O -0.529 6.529
7 N -0.713 5.713
8 C 0.123 3.877
9 C 0.061 3.939
10 H 0.107 0.893
11 C 0.142 3.858
12 N -0.588 5.588
13 C -0.248 4.248
14 H 0.069 0.931
15 C 0.002 3.998
16 N -0.908 5.908
17 Si 0.904 3.096
18 H -0.288 1.288
19 H -0.289 1.289
20 H -0.280 1.280
21 C 0.160 3.840
22 C -0.172 4.172
23 C 0.067 3.933
24 O -0.370 6.370
25 H 0.064 0.936
26 H 0.070 0.930
27 H 0.064 0.936
28 H 0.049 0.951
29 H 0.049 0.951
30 H 0.078 0.922
31 H 0.078 0.922
32 H 0.400 0.600
33 H 0.079 0.921
34 H 0.062 0.938
35 H 0.104 0.896
36 H 0.020 0.980
37 H 0.255 0.745
38 H 0.032 0.968
39 H 0.033 0.967
40 H 0.049 0.951
41 H 0.056 0.944
42 H 0.051 0.949
43 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.263 -11.702 5.000 14.183
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.022 4.022
3 O -0.283 6.283
4 C -0.035 4.035
5 C 0.293 3.707
6 O -0.405 6.405
7 N -0.365 5.365
8 C -0.001 4.001
9 C 0.002 3.998
10 H 0.125 0.875
11 C 0.018 3.982
12 N -0.308 5.308
13 C -0.378 4.378
14 H 0.087 0.913
15 C -0.196 4.196
16 N -0.553 5.553
17 Si 0.734 3.266
18 H -0.215 1.215
19 H -0.215 1.215
20 H -0.206 1.206
21 C 0.031 3.969
22 C -0.213 4.213
23 C -0.011 4.011
24 O -0.288 6.288
25 H 0.083 0.917
26 H 0.089 0.911
27 H 0.083 0.917
28 H 0.067 0.933
29 H 0.068 0.932
30 H 0.096 0.904
31 H 0.096 0.904
32 H 0.234 0.766
33 H 0.097 0.903
34 H 0.081 0.919
35 H 0.122 0.878
36 H 0.038 0.962
37 H 0.065 0.935
38 H 0.050 0.950
39 H 0.051 0.949
40 H 0.068 0.932
41 H 0.075 0.925
42 H 0.069 0.931
43 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -7.191 -10.893 5.019 13.985
hybrid contribution 1.157 -0.292 -1.015 1.567
sum -6.034 -11.185 4.003 13.325
Atomic orbital electron populations
1.21727 0.93525 1.02077 1.03474 1.22533 0.95908 0.83641 1.00106
1.88026 1.18780 1.26056 1.95413 1.22204 0.83630 0.95263 1.02412
1.20154 0.83003 0.90256 0.77265 1.90711 1.49449 1.51739 1.48593
1.45804 1.06357 1.09646 1.74698 1.21714 0.95890 0.80406 1.02086
1.22213 0.90256 0.98089 0.89226 0.87500 1.20747 0.83875 0.92955
1.00672 1.44111 1.00794 1.75380 1.10519 1.19245 1.00810 1.33195
0.84518 0.91315 1.24898 0.99096 0.98362 0.97228 1.69858 1.28259
1.35798 1.21436 0.86272 0.78016 0.80330 0.82002 1.21550 1.21503
1.20579 1.20385 0.95690 0.91543 0.89270 1.23582 0.98240 1.00482
0.99020 1.22346 0.84509 0.94125 1.00108 1.87515 1.34039 1.70615
1.36680 0.91689 0.91101 0.91711 0.93286 0.93249 0.90437 0.90405
0.76604 0.90293 0.91932 0.87784 0.96173 0.93451 0.94987 0.94890
0.93183 0.92500 0.93121 0.91902
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16
2 C 0.05 0.52 6.66 37.16 0.25 0.77 16
3 O -0.36 -5.09 9.88 -55.14 -0.54 -5.64 16
4 C 0.05 0.55 6.42 36.00 0.23 0.78 16
5 C 0.51 8.41 7.91 -10.99 -0.09 8.32 16
6 O -0.53 -11.12 16.50 -14.35 -0.24 -11.35 16
7 N -0.71 -11.31 5.41 -60.30 -0.33 -11.63 16
8 C 0.12 2.27 5.25 -4.04 -0.02 2.25 16
9 C 0.06 1.22 1.98 -29.64 -0.06 1.16 16
10 H 0.11 2.40 5.24 -51.93 -0.27 2.12 16
11 C 0.14 3.20 4.71 -4.94 -0.02 3.18 16
12 N -0.59 -13.97 2.61 -174.51 -0.46 -14.43 16
13 C -0.25 -6.42 9.62 -15.06 -0.14 -6.56 16
14 H 0.07 1.78 7.87 -52.49 -0.41 1.36 16
15 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16
16 N -0.91 -23.50 9.56 55.49 0.53 -22.97 16
17 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16
18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16
21 C 0.16 3.34 5.33 -4.43 -0.02 3.32 16
22 C -0.17 -3.15 6.75 -24.33 -0.16 -3.31 16
23 C 0.07 1.22 6.38 38.32 0.24 1.46 16
24 O -0.37 -7.08 9.44 -31.93 -0.30 -7.38 16
25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
28 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16
29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
30 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16
31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
32 H 0.40 5.47 8.26 -40.82 -0.34 5.13 16
33 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16
34 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16
35 H 0.10 2.57 6.03 -51.93 -0.31 2.26 16
36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
37 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16
38 H 0.03 0.65 7.98 -51.93 -0.41 0.24 16
39 H 0.03 0.68 7.95 -51.93 -0.41 0.27 16
40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16
42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
43 H 0.06 1.28 6.66 -51.93 -0.35 0.94 16
LS Contribution 344.66 15.07 5.19 5.19
Total: -1.00 -30.12 344.66 -7.81 -37.93
By element:
Atomic # 1 Polarization: 11.25 SS G_CDS: -7.14 Total: 4.11 kcal
Atomic # 6 Polarization: 9.94 SS G_CDS: 0.50 Total: 10.44 kcal
Atomic # 7 Polarization: -48.78 SS G_CDS: -0.25 Total: -49.03 kcal
Atomic # 8 Polarization: -23.29 SS G_CDS: -1.08 Total: -24.37 kcal
Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal
Total LS contribution 5.19 Total: 5.19 kcal
Total: -30.12 -7.81 -37.93 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001149074829.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.967 kcal
(2) G-P(sol) polarization free energy of solvation -30.119 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.087 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.901 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds