Wall clock time and date at job start Tue Mar 31 2020 02:44:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42900 * 109.47084 * 2 1
4 4 C 1.42896 * 114.00070 * 179.97438 * 3 2 1
5 5 C 1.50698 * 109.47559 * 179.97438 * 4 3 2
6 6 O 1.21282 * 119.99715 * 0.02562 * 5 4 3
7 7 N 1.34772 * 120.00564 * 179.97438 * 5 4 3
8 8 C 1.46497 * 120.00390 * 179.97438 * 7 5 4
9 9 C 1.53001 * 109.47194 * 180.02562 * 8 7 5
10 10 H 1.08999 * 108.57158 * 60.00237 * 9 8 7
11 11 C 1.46916 * 108.61875 * 177.94951 * 9 8 7
12 12 N 1.50102 * 106.78328 * 178.04502 * 11 9 8
13 13 C 1.36933 * 120.75360 * 111.17476 * 12 11 9
14 14 H 1.07999 * 120.00084 * 155.71262 * 13 12 11
15 15 C 1.38807 * 120.00113 * 335.71486 * 13 12 11
16 16 N 1.31623 * 119.99784 * 340.86547 * 15 13 12
17 17 Si 1.86796 * 120.00336 * 160.86760 * 15 13 12
18 18 H 1.48498 * 109.47241 * 90.00266 * 17 15 13
19 19 H 1.48502 * 109.47151 * 210.00004 * 17 15 13
20 20 H 1.48500 * 109.47405 * 330.00007 * 17 15 13
21 21 C 1.43433 * 118.61123 * 291.14677 * 12 11 9
22 22 C 1.55329 * 116.23555 * 89.40834 * 21 12 11
23 23 C 1.55198 * 108.87152 * 319.46481 * 22 21 12
24 24 O 1.39637 * 110.56776 * 322.14183 * 23 22 21
25 25 H 1.09006 * 109.47068 * 60.00298 * 1 2 3
26 26 H 1.09004 * 109.47317 * 179.97438 * 1 2 3
27 27 H 1.08997 * 109.47731 * 300.00370 * 1 2 3
28 28 H 1.09008 * 109.46725 * 119.99306 * 2 1 3
29 29 H 1.08999 * 109.47330 * 239.99287 * 2 1 3
30 30 H 1.09000 * 109.47315 * 299.99810 * 4 3 2
31 31 H 1.09001 * 109.47353 * 59.99220 * 4 3 2
32 32 H 0.97005 * 119.99489 * 0.02562 * 7 5 4
33 33 H 1.08990 * 109.47121 * 300.00551 * 8 7 5
34 34 H 1.09002 * 109.46872 * 60.00347 * 8 7 5
35 35 H 1.09006 * 109.99057 * 297.23307 * 11 9 8
36 36 H 1.08997 * 109.99568 * 58.60192 * 11 9 8
37 37 H 0.97001 * 120.00108 * 180.02562 * 16 15 13
38 38 H 1.09001 * 108.12822 * 327.65225 * 21 12 11
39 39 H 1.08993 * 107.96520 * 211.03850 * 21 12 11
40 40 H 1.08998 * 109.57407 * 199.64911 * 22 21 12
41 41 H 1.09003 * 109.57499 * 79.28003 * 22 21 12
42 42 H 1.08996 * 109.25235 * 201.86237 * 23 22 21
43 43 H 1.08999 * 109.25439 * 82.42792 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4308 1.4601 0.0006
5 6 3.8195 2.9161 -0.0001
6 8 2.9610 3.7729 -0.0005
7 7 5.1209 3.2663 0.0008
8 6 5.4987 4.6817 -0.0004
9 6 7.0239 4.8025 0.0003
10 1 7.4113 4.3140 -0.8938
11 6 7.3817 6.2265 -0.0508
12 7 8.8801 6.2991 0.0007
13 6 9.5992 6.7077 -1.0906
14 1 10.5849 7.1296 -0.9606
15 6 9.0614 6.5797 -2.3638
16 7 8.0622 5.7495 -2.5757
17 14 9.7556 7.5856 -3.7765
18 1 10.8508 6.8272 -4.4327
19 1 8.6813 7.8584 -4.7647
20 1 10.2867 8.8706 -3.2551
21 6 9.5441 5.9318 1.2179
22 6 9.9283 4.4340 1.3655
23 6 8.7677 3.5617 0.8172
24 8 7.5330 4.1257 1.1449
25 1 -0.3633 0.5138 -0.8901
26 1 -0.3634 -1.0277 -0.0005
27 1 -0.3634 0.5139 0.8899
28 1 1.8933 -0.5138 0.8901
29 1 1.8934 -0.5139 -0.8899
30 1 3.8332 0.9768 0.8908
31 1 3.8340 0.9764 -0.8891
32 1 5.8075 2.5810 0.0015
33 1 5.0968 5.1642 -0.8912
34 1 5.0950 5.1662 0.8886
35 1 7.0209 6.6683 -0.9797
36 1 6.9519 6.7497 0.8034
37 1 7.6866 5.6598 -3.4655
38 1 8.8955 6.1994 2.0521
39 1 10.4552 6.5249 1.2960
40 1 10.0942 4.2016 2.4174
41 1 10.8364 4.2323 0.7975
42 1 8.8330 2.5634 1.2498
43 1 8.8536 3.4894 -0.2669
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001149074829.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:44:14
Heat of formation + Delta-G solvation = -118.060930 kcal
Electronic energy + Delta-G solvation = -23734.090867 eV
Core-core repulsion = 20200.848100 eV
Total energy + Delta-G solvation = -3533.242767 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.09482 -40.29650 -38.58549 -36.79409 -35.94550 -33.87154 -33.05372 -32.35266
-30.47658 -28.87790 -27.05932 -26.53021 -24.19220 -23.64826 -22.40759 -21.53443
-21.27146 -18.97302 -18.25853 -17.94381 -17.67528 -17.33553 -16.76628 -16.48735
-16.26708 -15.85035 -15.78639 -15.50820 -14.88495 -14.72414 -14.37432 -14.13323
-13.84413 -13.72802 -13.54076 -13.27985 -13.21685 -12.94150 -12.61367 -12.50574
-12.31404 -12.29103 -12.15937 -11.92177 -11.76749 -11.37521 -11.18870 -10.90812
-10.65034 -10.55574 -10.26850 -10.09322 -8.71573 -7.89649 -5.29941 1.47086
1.51986 1.58930 1.58986 1.86677 2.52256 3.05269 3.13210 3.28084
3.51273 3.77682 4.15939 4.17910 4.19825 4.28168 4.31730 4.37226
4.38668 4.42679 4.52472 4.57044 4.73838 4.78363 4.80786 4.84305
4.97007 5.04597 5.08482 5.19220 5.20085 5.27947 5.35165 5.39161
5.43075 5.51045 5.68458 6.12723 6.36600 6.52216 6.58697 7.10956
7.23595 7.83334 8.36359 9.16441
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.021122 B = 0.003835 C = 0.003448
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1325.283524 B = 7298.700709 C = 8118.053856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.047 3.953
3 O -0.403 6.403
4 C 0.052 3.948
5 C 0.504 3.496
6 O -0.582 6.582
7 N -0.703 5.703
8 C 0.134 3.866
9 C 0.082 3.918
10 H 0.087 0.913
11 C 0.143 3.857
12 N -0.602 5.602
13 C -0.263 4.263
14 H 0.063 0.937
15 C -0.036 4.036
16 N -0.917 5.917
17 Si 0.959 3.041
18 H -0.287 1.287
19 H -0.294 1.294
20 H -0.280 1.280
21 C 0.153 3.847
22 C -0.165 4.165
23 C 0.067 3.933
24 O -0.367 6.367
25 H 0.052 0.948
26 H 0.098 0.902
27 H 0.053 0.947
28 H 0.068 0.932
29 H 0.066 0.934
30 H 0.111 0.889
31 H 0.107 0.893
32 H 0.414 0.586
33 H 0.060 0.940
34 H 0.056 0.944
35 H 0.078 0.922
36 H 0.024 0.976
37 H 0.251 0.749
38 H 0.034 0.966
39 H 0.030 0.970
40 H 0.078 0.922
41 H 0.054 0.946
42 H 0.090 0.910
43 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.817 -13.868 5.750 16.101
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.028 4.028
3 O -0.323 6.323
4 C -0.027 4.027
5 C 0.291 3.709
6 O -0.462 6.462
7 N -0.356 5.356
8 C 0.009 3.991
9 C 0.023 3.977
10 H 0.105 0.895
11 C 0.018 3.982
12 N -0.323 5.323
13 C -0.393 4.393
14 H 0.081 0.919
15 C -0.233 4.233
16 N -0.563 5.563
17 Si 0.788 3.212
18 H -0.214 1.214
19 H -0.220 1.220
20 H -0.205 1.205
21 C 0.025 3.975
22 C -0.206 4.206
23 C -0.010 4.010
24 O -0.285 6.285
25 H 0.071 0.929
26 H 0.116 0.884
27 H 0.073 0.927
28 H 0.087 0.913
29 H 0.084 0.916
30 H 0.129 0.871
31 H 0.125 0.875
32 H 0.250 0.750
33 H 0.078 0.922
34 H 0.075 0.925
35 H 0.096 0.904
36 H 0.042 0.958
37 H 0.060 0.940
38 H 0.053 0.947
39 H 0.048 0.952
40 H 0.097 0.903
41 H 0.073 0.927
42 H 0.108 0.892
43 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -6.712 -13.101 5.791 15.818
hybrid contribution 1.034 0.389 -1.197 1.629
sum -5.677 -12.712 4.594 14.660
Atomic orbital electron populations
1.21783 0.93255 1.03510 1.02361 1.22805 0.96239 0.81953 1.01832
1.87984 1.19617 1.28898 1.95799 1.22253 0.83467 0.91730 1.05294
1.21048 0.82218 0.92073 0.75585 1.90685 1.50769 1.53698 1.51000
1.45666 1.06971 1.08714 1.74218 1.21362 0.94702 0.82143 1.00901
1.21741 0.90878 0.96352 0.88777 0.89542 1.20670 0.83574 0.94526
0.99391 1.44224 1.01175 1.76105 1.10826 1.19384 1.00887 1.33543
0.85446 0.91919 1.25466 0.99734 0.99189 0.98885 1.69982 1.28787
1.36230 1.21308 0.85423 0.77145 0.79078 0.79568 1.21369 1.22030
1.20530 1.20510 0.95413 0.93529 0.88062 1.23496 0.98109 0.98174
1.00816 1.22420 0.83879 0.95852 0.98890 1.87515 1.34549 1.70437
1.36002 0.92907 0.88368 0.92741 0.91342 0.91569 0.87132 0.87501
0.75013 0.92190 0.92522 0.90420 0.95822 0.93970 0.94739 0.95157
0.90304 0.92739 0.89245 0.94445
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.32 10.28 71.98 0.74 -1.58 16
2 C 0.05 0.78 6.66 71.98 0.48 1.26 16
3 O -0.40 -10.65 9.88 -129.94 -1.28 -11.94 16
4 C 0.05 1.13 6.42 71.24 0.46 1.59 16
5 C 0.50 16.24 7.91 87.66 0.69 16.94 16
6 O -0.58 -24.85 16.50 16.00 0.26 -24.59 16
7 N -0.70 -21.65 5.41 -463.08 -2.51 -24.16 16
8 C 0.13 5.01 5.25 86.38 0.45 5.47 16
9 C 0.08 3.27 1.98 28.71 0.06 3.32 16
10 H 0.09 3.91 5.24 -2.39 -0.01 3.89 16
11 C 0.14 6.55 4.71 83.79 0.39 6.94 16
12 N -0.60 -28.75 2.61 -706.04 -1.84 -30.59 16
13 C -0.26 -13.69 9.62 84.03 0.81 -12.88 16
14 H 0.06 3.27 7.87 -2.91 -0.02 3.25 16
15 C -0.04 -1.89 4.93 84.86 0.42 -1.47 16
16 N -0.92 -48.22 9.56 21.65 0.21 -48.01 16
17 Si 0.96 43.00 29.59 68.60 2.03 45.03 16
18 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16
19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16
20 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16
21 C 0.15 6.25 5.33 87.75 0.47 6.71 16
22 C -0.17 -5.67 6.75 32.15 0.22 -5.45 16
23 C 0.07 2.28 6.38 72.74 0.46 2.75 16
24 O -0.37 -13.39 9.44 -137.16 -1.29 -14.69 16
25 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16
26 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16
27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16
28 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16
29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
30 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16
31 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16
32 H 0.41 10.48 8.26 -92.70 -0.77 9.72 16
33 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16
34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16
35 H 0.08 3.97 6.03 -2.38 -0.01 3.96 16
36 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16
37 H 0.25 13.04 8.31 -92.71 -0.77 12.27 16
38 H 0.03 1.37 7.98 -2.39 -0.02 1.35 16
39 H 0.03 1.23 7.95 -2.39 -0.02 1.21 16
40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16
41 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16
42 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16
43 H 0.04 1.48 6.66 -2.39 -0.02 1.47 16
Total: -1.00 -66.11 344.66 1.45 -64.66
By element:
Atomic # 1 Polarization: 20.46 SS G_CDS: 0.23 Total: 20.69 kcal
Atomic # 6 Polarization: 17.95 SS G_CDS: 5.65 Total: 23.60 kcal
Atomic # 7 Polarization: -98.62 SS G_CDS: -4.14 Total: -102.76 kcal
Atomic # 8 Polarization: -48.90 SS G_CDS: -2.31 Total: -51.21 kcal
Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal
Total: -66.11 1.45 -64.66 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001149074829.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.399 kcal
(2) G-P(sol) polarization free energy of solvation -66.111 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.510 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.662 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.061 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds