Wall clock time and date at job start Tue Mar 31 2020 03:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00078 * 2 1 4 4 C 1.52995 * 109.47150 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47149 * 65.15386 * 4 3 2 6 6 C 1.46903 * 111.00021 * 199.69336 * 5 4 3 7 7 C 1.50696 * 109.47113 * 66.04360 * 6 5 4 8 8 H 1.08005 * 119.99745 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00349 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99739 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00211 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47203 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46939 * 120.00437 * 11 9 7 14 14 H 1.48502 * 109.47322 * 240.00244 * 11 9 7 15 15 C 1.46901 * 110.99838 * 75.74035 * 5 4 3 16 16 C 1.53005 * 109.47019 * 200.16539 * 15 5 4 17 17 N 1.46895 * 109.47114 * 177.28321 * 16 15 5 18 18 C 1.47013 * 111.00245 * 66.04598 * 17 16 15 19 19 C 1.53097 * 109.25979 * 177.60719 * 18 17 16 20 20 O 1.43013 * 109.29247 * 56.82772 * 19 18 17 21 21 C 1.43023 * 113.73941 * 301.39993 * 20 19 18 22 22 C 1.47016 * 110.99931 * 302.41336 * 17 16 15 23 23 H 1.08997 * 109.51045 * 62.41092 * 22 17 16 24 24 C 1.53007 * 109.50419 * 302.32404 * 22 17 16 25 25 H 1.09002 * 109.46782 * 60.00217 * 1 2 3 26 26 H 1.08999 * 109.47479 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47186 * 300.00444 * 1 2 3 28 28 H 1.09005 * 109.46885 * 59.99571 * 3 2 1 29 29 H 1.09005 * 109.47083 * 299.99906 * 3 2 1 30 30 H 1.09002 * 109.47122 * 305.15518 * 4 3 2 31 31 H 1.09003 * 109.47326 * 185.15421 * 4 3 2 32 32 H 1.08994 * 109.47370 * 186.04634 * 6 5 4 33 33 H 1.09006 * 109.46882 * 306.04740 * 6 5 4 34 34 H 0.96998 * 120.00259 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47051 * 80.17086 * 15 5 4 36 36 H 1.08993 * 109.47022 * 320.16539 * 15 5 4 37 37 H 1.08995 * 109.46753 * 57.27880 * 16 15 5 38 38 H 1.08999 * 109.47185 * 297.28020 * 16 15 5 39 39 H 1.08999 * 109.50689 * 57.67156 * 18 17 16 40 40 H 1.09000 * 109.50605 * 297.54601 * 18 17 16 41 41 H 1.08997 * 109.50687 * 176.78113 * 19 18 17 42 42 H 1.08998 * 109.50541 * 296.87150 * 19 18 17 43 43 H 1.08996 * 109.46758 * 298.66838 * 21 20 19 44 44 H 1.08997 * 109.54139 * 178.57931 * 21 20 19 45 45 H 1.09005 * 109.46889 * 60.00498 * 24 22 17 46 46 H 1.08992 * 109.47092 * 179.97438 * 24 22 17 47 47 H 1.09000 * 109.47292 * 300.00425 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9781 0.5656 -1.2558 6 6 5.3313 0.0099 -1.1208 7 6 5.3079 -1.1377 -0.1444 8 1 4.3805 -1.4258 0.3282 9 6 6.4703 -1.8207 0.1448 10 7 7.5995 -1.4702 -0.4312 11 14 6.4411 -3.2437 1.3545 12 1 5.0578 -3.4362 1.8590 13 1 6.8959 -4.4821 0.6729 14 1 7.3465 -2.9443 2.4929 15 6 3.9111 1.5240 -2.3671 16 6 3.8816 0.7642 -3.6948 17 7 3.7490 1.7195 -4.8028 18 6 4.9441 2.5686 -4.9123 19 6 4.7894 3.5059 -6.1128 20 8 3.5920 4.2733 -5.9620 21 6 2.4084 3.4780 -5.8520 22 6 2.5391 2.5404 -4.6487 23 1 2.6125 3.1289 -3.7342 24 6 1.3109 1.6310 -4.5740 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8506 0.5662 0.8411 31 1 3.9785 2.1763 0.0930 32 1 5.6765 -0.3458 -2.0915 33 1 6.0070 0.7836 -0.7560 34 1 8.4173 -1.9503 -0.2275 35 1 4.7858 2.1738 -2.3397 36 1 3.0077 2.1266 -2.2731 37 1 3.0340 0.0789 -3.7024 38 1 4.8065 0.1994 -3.8108 39 1 5.8247 1.9415 -5.0513 40 1 5.0563 3.1581 -4.0023 41 1 5.6472 4.1764 -6.1641 42 1 4.7317 2.9178 -7.0287 43 1 2.2809 2.8890 -6.7602 44 1 1.5440 4.1276 -5.7150 45 1 1.4063 0.9612 -3.7194 46 1 0.4143 2.2401 -4.4593 47 1 1.2372 1.0440 -5.4894 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167558620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:26 Heat of formation + Delta-G solvation = -75.142476 kcal Electronic energy + Delta-G solvation = -24607.052222 eV Core-core repulsion = 21211.503633 eV Total energy + Delta-G solvation = -3395.548589 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.90910 -37.89727 -36.73315 -35.38929 -32.62081 -32.48039 -30.14879 -28.94871 -27.49546 -26.58167 -25.91692 -24.63688 -22.85274 -22.45276 -22.12500 -20.27836 -18.95487 -16.69450 -16.41165 -16.32569 -15.95745 -15.61025 -15.44913 -15.01383 -14.76620 -14.59418 -14.52200 -13.94052 -13.78230 -13.31618 -13.00981 -12.65750 -12.14742 -12.10590 -12.09178 -11.96552 -11.83818 -11.55385 -11.42443 -11.23844 -11.14193 -11.02666 -10.74414 -10.62818 -10.53841 -10.32263 -10.07088 -9.65195 -9.58230 -9.28389 -9.09754 -8.40237 -8.17855 -7.19420 -5.99201 -3.99070 3.34067 3.41633 3.48429 3.78462 3.94458 4.22996 4.47209 4.76336 4.84761 5.02154 5.03008 5.13489 5.25327 5.35837 5.38446 5.41491 5.46003 5.50040 5.56710 5.60204 5.65442 5.67636 5.71584 5.75130 5.81088 5.85395 5.90222 5.95269 5.99021 6.11251 6.16395 6.20929 6.31995 6.65190 6.68245 7.05291 7.09099 7.19575 7.31277 7.34034 7.62500 7.88110 8.11695 8.21180 8.58650 9.11209 9.65183 11.11893 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.014817 B = 0.005025 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.306228 B = 5571.272396 C = 6979.847032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.072 3.928 4 C 0.060 3.940 5 N -0.521 5.521 6 C 0.194 3.806 7 C -0.502 4.502 8 H 0.068 0.932 9 C 0.054 3.946 10 N -0.901 5.901 11 Si 0.895 3.105 12 H -0.271 1.271 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.021 3.979 16 C 0.060 3.940 17 N -0.528 5.528 18 C 0.013 3.987 19 C 0.065 3.935 20 O -0.389 6.389 21 C 0.069 3.931 22 C 0.041 3.959 23 H 0.051 0.949 24 C -0.146 4.146 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.031 0.969 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.032 0.968 32 H 0.032 0.968 33 H -0.013 1.013 34 H 0.259 0.741 35 H 0.022 0.978 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.092 0.908 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.702 9.651 -7.768 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C -0.006 4.006 4 C -0.069 4.069 5 N -0.246 5.246 6 C 0.069 3.931 7 C -0.540 4.540 8 H 0.087 0.913 9 C -0.147 4.147 10 N -0.542 5.542 11 Si 0.724 3.276 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.213 1.213 15 C -0.109 4.109 16 C -0.067 4.067 17 N -0.253 5.253 18 C -0.115 4.115 19 C -0.012 4.012 20 O -0.308 6.308 21 C -0.008 4.008 22 C -0.068 4.068 23 H 0.069 0.931 24 C -0.204 4.204 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.115 0.885 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.005 0.995 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.761 8.973 -8.326 16.975 hybrid contribution 0.630 0.316 1.648 1.793 sum -11.132 9.289 -6.677 15.962 Atomic orbital electron populations 1.22670 0.82950 1.02133 0.98870 1.88133 1.17671 1.27253 1.94988 1.22602 0.95088 0.84695 0.98194 1.22022 0.91600 0.97604 0.95667 1.62043 1.29537 1.31153 1.01820 1.19764 0.81816 0.93977 0.97550 1.21264 0.94513 1.14305 1.23968 0.91341 1.24982 0.95451 0.97619 0.96605 1.69972 0.99119 1.41385 1.43675 0.86470 0.78087 0.82251 0.80831 1.19531 1.21090 1.21274 1.22704 0.99028 0.95007 0.94142 1.22230 1.03970 0.94216 0.86331 1.62621 1.01503 1.17157 1.44034 1.22805 0.94440 0.95972 0.98299 1.22672 0.87426 0.93964 0.97162 1.87950 1.15161 1.33591 1.94063 1.22716 0.87670 0.93303 0.97098 1.22301 0.91835 0.94685 0.97974 0.93124 1.21819 0.95524 0.99672 1.03366 0.94882 0.90119 0.95052 0.94323 0.94476 0.88526 0.94981 0.95022 0.99542 0.93108 0.95974 0.92435 0.89426 0.90045 0.89382 0.93683 0.88707 0.92426 0.92449 0.88943 0.91150 0.92506 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.36 -6.54 10.65 -35.23 -0.38 -6.92 16 3 C 0.07 1.17 6.11 37.15 0.23 1.39 16 4 C 0.06 1.16 5.17 -3.83 -0.02 1.14 16 5 N -0.52 -11.09 4.30 -236.07 -1.02 -12.10 16 6 C 0.19 5.00 4.54 -4.98 -0.02 4.97 16 7 C -0.50 -14.13 8.23 -34.44 -0.28 -14.41 16 8 H 0.07 1.96 7.31 -52.48 -0.38 1.58 16 9 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 11 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.02 0.38 4.11 -3.82 -0.02 0.37 16 16 C 0.06 1.01 4.93 -3.82 -0.02 0.99 16 17 N -0.53 -7.58 4.75 -226.34 -1.07 -8.65 16 18 C 0.01 0.18 5.33 -3.71 -0.02 0.16 16 19 C 0.06 0.76 7.01 37.21 0.26 1.02 16 20 O -0.39 -5.09 10.83 -35.23 -0.38 -5.48 16 21 C 0.07 0.79 6.29 37.21 0.23 1.02 16 22 C 0.04 0.52 2.06 -67.60 -0.14 0.38 16 23 H 0.05 0.70 6.34 -51.93 -0.33 0.37 16 24 C -0.15 -1.66 8.89 37.16 0.33 -1.33 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.56 6.66 -51.93 -0.35 0.22 16 30 H 0.10 2.12 6.58 -51.93 -0.34 1.78 16 31 H 0.03 0.59 8.00 -51.93 -0.42 0.17 16 32 H 0.03 0.87 6.70 -51.93 -0.35 0.52 16 33 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.02 0.42 6.59 -51.93 -0.34 0.08 16 36 H 0.06 0.95 4.57 -51.93 -0.24 0.71 16 37 H 0.09 1.52 6.40 -51.93 -0.33 1.19 16 38 H 0.08 1.55 6.86 -51.93 -0.36 1.19 16 39 H 0.09 1.20 8.12 -51.93 -0.42 0.78 16 40 H 0.04 0.67 6.65 -51.93 -0.35 0.32 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 0.92 6.43 -51.93 -0.33 0.59 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 358.88 15.07 5.41 5.41 Total: -1.00 -30.95 358.88 -8.49 -39.45 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -8.32 Total: -1.20 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 1.55 Total: -1.33 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -1.35 Total: -46.85 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.76 Total: -12.39 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.95 -8.49 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167558620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.697 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds