Wall clock time and date at job start Tue Mar 31 2020 03:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00078 * 2 1 4 4 C 1.52995 * 109.47150 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47149 * 65.15386 * 4 3 2 6 6 C 1.46903 * 111.00021 * 199.69336 * 5 4 3 7 7 C 1.50696 * 109.47113 * 66.04360 * 6 5 4 8 8 H 1.08005 * 119.99745 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00349 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99739 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00211 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47203 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46939 * 120.00437 * 11 9 7 14 14 H 1.48502 * 109.47322 * 240.00244 * 11 9 7 15 15 C 1.46901 * 110.99838 * 75.74035 * 5 4 3 16 16 C 1.53005 * 109.47019 * 200.16539 * 15 5 4 17 17 N 1.46895 * 109.47114 * 177.28321 * 16 15 5 18 18 C 1.47013 * 111.00245 * 66.04598 * 17 16 15 19 19 C 1.53097 * 109.25979 * 177.60719 * 18 17 16 20 20 O 1.43013 * 109.29247 * 56.82772 * 19 18 17 21 21 C 1.43023 * 113.73941 * 301.39993 * 20 19 18 22 22 C 1.47016 * 110.99931 * 302.41336 * 17 16 15 23 23 H 1.08997 * 109.51045 * 62.41092 * 22 17 16 24 24 C 1.53007 * 109.50419 * 302.32404 * 22 17 16 25 25 H 1.09002 * 109.46782 * 60.00217 * 1 2 3 26 26 H 1.08999 * 109.47479 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47186 * 300.00444 * 1 2 3 28 28 H 1.09005 * 109.46885 * 59.99571 * 3 2 1 29 29 H 1.09005 * 109.47083 * 299.99906 * 3 2 1 30 30 H 1.09002 * 109.47122 * 305.15518 * 4 3 2 31 31 H 1.09003 * 109.47326 * 185.15421 * 4 3 2 32 32 H 1.08994 * 109.47370 * 186.04634 * 6 5 4 33 33 H 1.09006 * 109.46882 * 306.04740 * 6 5 4 34 34 H 0.96998 * 120.00259 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47051 * 80.17086 * 15 5 4 36 36 H 1.08993 * 109.47022 * 320.16539 * 15 5 4 37 37 H 1.08995 * 109.46753 * 57.27880 * 16 15 5 38 38 H 1.08999 * 109.47185 * 297.28020 * 16 15 5 39 39 H 1.08999 * 109.50689 * 57.67156 * 18 17 16 40 40 H 1.09000 * 109.50605 * 297.54601 * 18 17 16 41 41 H 1.08997 * 109.50687 * 176.78113 * 19 18 17 42 42 H 1.08998 * 109.50541 * 296.87150 * 19 18 17 43 43 H 1.08996 * 109.46758 * 298.66838 * 21 20 19 44 44 H 1.08997 * 109.54139 * 178.57931 * 21 20 19 45 45 H 1.09005 * 109.46889 * 60.00498 * 24 22 17 46 46 H 1.08992 * 109.47092 * 179.97438 * 24 22 17 47 47 H 1.09000 * 109.47292 * 300.00425 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9781 0.5656 -1.2558 6 6 5.3313 0.0099 -1.1208 7 6 5.3079 -1.1377 -0.1444 8 1 4.3805 -1.4258 0.3282 9 6 6.4703 -1.8207 0.1448 10 7 7.5995 -1.4702 -0.4312 11 14 6.4411 -3.2437 1.3545 12 1 5.0578 -3.4362 1.8590 13 1 6.8959 -4.4821 0.6729 14 1 7.3465 -2.9443 2.4929 15 6 3.9111 1.5240 -2.3671 16 6 3.8816 0.7642 -3.6948 17 7 3.7490 1.7195 -4.8028 18 6 4.9441 2.5686 -4.9123 19 6 4.7894 3.5059 -6.1128 20 8 3.5920 4.2733 -5.9620 21 6 2.4084 3.4780 -5.8520 22 6 2.5391 2.5404 -4.6487 23 1 2.6125 3.1289 -3.7342 24 6 1.3109 1.6310 -4.5740 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8506 0.5662 0.8411 31 1 3.9785 2.1763 0.0930 32 1 5.6765 -0.3458 -2.0915 33 1 6.0070 0.7836 -0.7560 34 1 8.4173 -1.9503 -0.2275 35 1 4.7858 2.1738 -2.3397 36 1 3.0077 2.1266 -2.2731 37 1 3.0340 0.0789 -3.7024 38 1 4.8065 0.1994 -3.8108 39 1 5.8247 1.9415 -5.0513 40 1 5.0563 3.1581 -4.0023 41 1 5.6472 4.1764 -6.1641 42 1 4.7317 2.9178 -7.0287 43 1 2.2809 2.8890 -6.7602 44 1 1.5440 4.1276 -5.7150 45 1 1.4063 0.9612 -3.7194 46 1 0.4143 2.2401 -4.4593 47 1 1.2372 1.0440 -5.4894 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167558620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:25 Heat of formation + Delta-G solvation = -98.831654 kcal Electronic energy + Delta-G solvation = -24608.079462 eV Core-core repulsion = 21211.503633 eV Total energy + Delta-G solvation = -3396.575829 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.02155 -39.29688 -38.02765 -36.74568 -34.66046 -33.58525 -31.48267 -30.57702 -28.84828 -27.87454 -27.02808 -26.12021 -24.39389 -23.75138 -23.45207 -21.81801 -20.21656 -18.61375 -17.60368 -17.50234 -17.29425 -17.04250 -16.51748 -16.48720 -16.20623 -15.82748 -15.72845 -15.46345 -15.05804 -14.82192 -14.34723 -14.13525 -13.89691 -13.58602 -13.34059 -13.13788 -12.93788 -12.89777 -12.78170 -12.60900 -12.55052 -12.44359 -12.34841 -12.14062 -11.97332 -11.79108 -11.47793 -11.35748 -11.17845 -10.60580 -10.59692 -10.44214 -9.44954 -8.92776 -8.19727 -6.27944 1.39432 1.40680 1.54967 2.40889 2.70829 2.93514 3.02924 3.12794 3.28563 3.78722 3.85970 3.97059 4.08402 4.15564 4.17791 4.23259 4.26802 4.34249 4.42455 4.46106 4.56924 4.60033 4.61081 4.65724 4.67583 4.71868 4.78255 4.86245 4.90062 4.90893 4.92240 5.01898 5.06866 5.15768 5.20017 5.25414 5.37892 5.68052 5.90725 6.01369 6.08496 6.17183 6.29651 6.46403 6.66936 6.89061 7.41301 8.91639 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.014817 B = 0.005025 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.306228 B = 5571.272396 C = 6979.847032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.081 3.919 4 C 0.056 3.944 5 N -0.526 5.526 6 C 0.213 3.787 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.965 3.035 12 H -0.266 1.266 13 H -0.278 1.278 14 H -0.278 1.278 15 C 0.032 3.968 16 C 0.074 3.926 17 N -0.527 5.527 18 C 0.011 3.989 19 C 0.070 3.930 20 O -0.402 6.402 21 C 0.070 3.930 22 C 0.039 3.961 23 H 0.040 0.960 24 C -0.140 4.140 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.007 0.993 33 H -0.044 1.044 34 H 0.263 0.737 35 H 0.008 0.992 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.030 0.970 41 H 0.113 0.887 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.117 0.883 45 H 0.050 0.950 46 H 0.082 0.918 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.847 10.246 -8.012 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C 0.004 3.996 4 C -0.072 4.072 5 N -0.250 5.250 6 C 0.087 3.913 7 C -0.553 4.553 8 H 0.079 0.921 9 C -0.195 4.195 10 N -0.576 5.576 11 Si 0.790 3.210 12 H -0.190 1.190 13 H -0.204 1.204 14 H -0.204 1.204 15 C -0.098 4.098 16 C -0.055 4.055 17 N -0.252 5.252 18 C -0.117 4.117 19 C -0.007 4.007 20 O -0.321 6.321 21 C -0.007 4.007 22 C -0.070 4.070 23 H 0.058 0.942 24 C -0.197 4.197 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.025 0.975 33 H -0.027 1.027 34 H 0.072 0.928 35 H 0.027 0.973 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.048 0.952 41 H 0.131 0.869 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.135 0.865 45 H 0.069 0.931 46 H 0.101 0.899 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.935 9.585 -8.576 18.963 hybrid contribution 1.256 0.179 1.698 2.119 sum -12.679 9.764 -6.878 17.419 Atomic orbital electron populations 1.22871 0.80357 1.03216 1.00539 1.88066 1.20608 1.28173 1.95355 1.22495 0.92197 0.84710 1.00177 1.22069 0.94527 0.97066 0.93555 1.61984 1.26394 1.32962 1.03703 1.19358 0.83702 0.92793 0.95472 1.21475 0.94337 1.15063 1.24429 0.92145 1.25851 0.94970 1.00296 0.98365 1.70089 0.99801 1.42718 1.45029 0.85391 0.78291 0.78780 0.78519 1.19033 1.20377 1.20372 1.22688 0.99296 0.94368 0.93441 1.21967 1.02187 0.94583 0.86735 1.62644 1.02683 1.17556 1.42322 1.22854 0.94075 0.95962 0.98831 1.22713 0.87918 0.93884 0.96158 1.87939 1.15804 1.34337 1.94017 1.22858 0.87903 0.93419 0.96519 1.22435 0.91326 0.94819 0.98401 0.94208 1.21773 0.95845 0.99453 1.02658 0.93297 0.89482 0.93153 0.91573 0.92970 0.91589 0.94094 0.97457 1.02675 0.92790 0.97350 0.90245 0.89723 0.93063 0.90105 0.95200 0.86921 0.91509 0.91650 0.86497 0.93086 0.89888 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.87 16 2 O -0.40 -14.05 10.65 -148.98 -1.59 -15.64 16 3 C 0.08 2.52 6.11 71.98 0.44 2.96 16 4 C 0.06 2.22 5.17 86.30 0.45 2.66 16 5 N -0.53 -23.12 4.30 -900.80 -3.88 -27.00 16 6 C 0.21 11.58 4.54 85.56 0.39 11.96 16 7 C -0.51 -29.97 8.23 25.60 0.21 -29.76 16 8 H 0.06 3.56 7.31 -2.91 -0.02 3.54 16 9 C 0.00 0.16 5.46 84.65 0.46 0.63 16 10 N -0.94 -57.18 13.29 21.45 0.28 -56.90 16 11 Si 0.97 45.59 29.54 68.60 2.03 47.62 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 15 C 0.03 1.17 4.11 86.30 0.35 1.52 16 16 C 0.07 2.56 4.93 86.31 0.43 2.98 16 17 N -0.53 -15.03 4.75 -870.01 -4.13 -19.16 16 18 C 0.01 0.31 5.33 86.31 0.46 0.77 16 19 C 0.07 1.55 7.01 72.01 0.50 2.06 16 20 O -0.40 -9.68 10.83 -148.98 -1.61 -11.29 16 21 C 0.07 1.40 6.29 72.01 0.45 1.85 16 22 C 0.04 0.91 2.06 44.93 0.09 1.00 16 23 H 0.04 1.04 6.34 -2.39 -0.02 1.02 16 24 C -0.14 -2.85 8.89 71.98 0.64 -2.21 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.05 1.45 6.66 -2.38 -0.02 1.44 16 30 H 0.07 2.99 6.58 -2.39 -0.02 2.98 16 31 H 0.04 1.51 8.00 -2.39 -0.02 1.49 16 32 H 0.01 0.43 6.70 -2.39 -0.02 0.42 16 33 H -0.04 -2.63 8.12 -2.38 -0.02 -2.65 16 34 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.01 0.33 6.59 -2.39 -0.02 0.31 16 36 H 0.08 2.56 4.57 -2.39 -0.01 2.55 16 37 H 0.08 2.99 6.40 -2.39 -0.02 2.97 16 38 H 0.05 2.08 6.86 -2.39 -0.02 2.06 16 39 H 0.08 2.30 8.12 -2.39 -0.02 2.28 16 40 H 0.03 0.91 6.65 -2.39 -0.02 0.89 16 41 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.05 1.25 6.43 -2.38 -0.02 1.23 16 46 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -68.55 358.88 -1.84 -70.40 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.92 Total: 13.68 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 6.13 Total: -1.70 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -7.72 Total: -103.05 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -3.20 Total: -26.93 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -68.55 -1.84 -70.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167558620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.436 kcal (2) G-P(sol) polarization free energy of solvation -68.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds