Wall clock time and date at job start Tue Mar 31 2020 03:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39593 * 120.48094 * 183.12673 * 3 2 1 5 5 N 1.31657 * 120.65920 * 179.76864 * 4 3 2 6 6 C 1.32544 * 121.79455 * 0.52454 * 5 4 3 7 7 N 1.38649 * 119.54510 * 179.75378 * 6 5 4 8 8 S 1.65606 * 120.00104 * 359.72625 * 7 6 5 9 9 O 1.42105 * 106.40008 * 311.45895 * 8 7 6 10 10 O 1.42098 * 106.40370 * 178.54081 * 8 7 6 11 11 C 1.76193 * 107.21910 * 65.00051 * 8 7 6 12 12 H 1.08002 * 120.00351 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00314 * 180.02562 * 11 8 7 14 14 N 1.31523 * 119.99660 * 359.97438 * 13 11 8 15 15 Si 1.86796 * 120.00522 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.46991 * 89.99398 * 15 13 11 17 17 H 1.48494 * 109.47334 * 210.00187 * 15 13 11 18 18 H 1.48506 * 109.46800 * 329.99864 * 15 13 11 19 19 C 1.39445 * 120.90881 * 359.47356 * 6 5 4 20 20 Cl 1.73602 * 120.37866 * 180.27822 * 19 6 5 21 21 C 1.37987 * 119.23559 * 0.25675 * 19 6 5 22 22 H 1.07998 * 119.66733 * 0.04761 * 4 3 2 23 23 H 0.97002 * 120.00285 * 179.72923 * 7 6 5 24 24 H 0.96997 * 119.99726 * 180.02562 * 14 13 11 25 25 H 1.08001 * 120.81408 * 179.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2755 1.2022 0.0656 5 7 4.5920 1.2066 0.0704 6 6 5.2944 0.0846 0.0035 7 7 6.6796 0.1439 0.0067 8 16 7.4455 1.6100 0.0869 9 8 6.8308 2.4378 -0.8910 10 8 8.8393 1.3341 0.1066 11 6 7.0561 2.3169 1.6531 12 1 6.4202 1.7828 2.3436 13 6 7.5632 3.5520 1.9974 14 7 8.3380 4.2022 1.1567 15 14 7.1499 4.3018 3.6575 16 1 8.1654 3.8826 4.6567 17 1 7.1476 5.7825 3.5452 18 1 5.8078 3.8362 4.0906 19 6 4.6594 -1.1551 -0.0642 20 17 5.5929 -2.6165 -0.1441 21 6 3.2805 -1.2066 -0.0665 22 1 2.7375 2.1372 0.1175 23 1 7.2002 -0.6734 -0.0380 24 1 8.6951 5.0709 1.3990 25 1 2.7623 -2.1528 -0.1186 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935109.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:42 Heat of formation + Delta-G solvation = -27.153240 kcal Electronic energy + Delta-G solvation = -17780.384108 eV Core-core repulsion = 14525.787141 eV Total energy + Delta-G solvation = -3254.596967 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 286.992 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.56196 -37.01627 -36.64356 -35.42926 -35.01067 -34.14556 -33.14062 -32.52078 -29.97174 -26.21529 -24.18879 -24.03498 -19.35147 -19.28566 -18.43367 -18.02249 -16.61519 -15.83394 -15.29791 -15.09778 -14.94116 -14.43159 -14.09827 -13.68820 -13.50607 -13.39999 -13.06134 -12.64892 -12.22406 -12.08288 -11.45057 -11.31780 -11.24199 -11.18642 -10.96501 -10.63296 -10.44058 -10.34265 -9.83213 -9.56418 -9.28317 -8.94018 -8.29764 -6.76364 -5.36371 0.54761 0.92351 1.82504 1.88899 2.59326 2.86601 3.04989 3.11365 3.17752 3.56622 3.72982 3.79543 4.05315 4.38498 4.53914 4.60643 4.80052 5.12093 5.31678 5.54174 5.64826 5.90851 6.22367 6.37616 7.10076 7.26467 7.36671 7.84242 7.90676 8.83055 10.18988 Molecular weight = 286.99amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.006750 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.694611 B = 4147.436452 C = 5136.150316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.273 3.727 3 C -0.134 4.134 4 C 0.219 3.781 5 N -0.478 5.478 6 C 0.452 3.548 7 N -1.032 6.032 8 S 2.689 3.311 9 O -0.966 6.966 10 O -0.991 6.991 11 C -0.993 4.993 12 H 0.103 0.897 13 C 0.135 3.865 14 N -0.846 5.846 15 Si 0.924 3.076 16 H -0.268 1.268 17 H -0.274 1.274 18 H -0.262 1.262 19 C -0.145 4.145 20 Cl -0.048 7.048 21 C 0.017 3.983 22 H 0.180 0.820 23 H 0.425 0.575 24 H 0.292 0.708 25 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.239 -9.953 -0.366 12.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.043 4.043 3 C -0.142 4.142 4 C 0.055 3.945 5 N -0.192 5.192 6 C 0.215 3.785 7 N -0.769 5.769 8 S 2.790 3.210 9 O -0.956 6.956 10 O -0.981 6.981 11 C -1.128 5.128 12 H 0.121 0.879 13 C -0.083 4.083 14 N -0.476 5.476 15 Si 0.748 3.252 16 H -0.193 1.193 17 H -0.199 1.199 18 H -0.186 1.186 19 C -0.180 4.180 20 Cl -0.020 7.020 21 C -0.012 4.012 22 H 0.197 0.803 23 H 0.261 0.739 24 H 0.102 0.898 25 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.690 -8.637 -1.105 11.617 hybrid contribution -0.029 -0.929 1.326 1.619 sum -7.720 -9.566 0.221 12.294 Atomic orbital electron populations 1.81262 1.11775 1.06948 1.09983 1.25139 0.91901 0.94019 0.93215 1.16707 0.85751 0.95056 1.16709 1.22898 0.87864 0.97046 0.86704 1.67758 1.08300 1.25573 1.17618 1.18044 0.85781 0.87912 0.86796 1.54808 1.09918 1.30927 1.81221 1.01576 0.71989 0.70031 0.77365 1.93412 1.76895 1.62820 1.62457 1.93430 1.31604 1.83482 1.89633 1.30111 1.44199 1.14388 1.24121 0.87910 1.24706 0.90326 0.94545 0.98754 1.69883 1.26887 1.14955 1.35844 0.86105 0.79861 0.78196 0.81042 1.19289 1.19937 1.18580 1.21204 0.92653 0.87710 1.16443 1.98366 1.72603 1.33886 1.97132 1.21200 0.90955 0.98294 0.90706 0.80347 0.73945 0.89775 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.72 18.54 41.84 0.78 -4.95 15 2 C 0.27 3.16 15.37 -22.48 -0.35 2.81 15 3 C -0.13 -1.49 5.75 -106.68 -0.61 -2.11 15 4 C 0.22 2.90 10.91 -17.12 -0.19 2.71 15 5 N -0.48 -8.53 8.26 -12.09 -0.10 -8.63 15 6 C 0.45 7.62 7.33 -155.12 -1.14 6.48 15 7 N -1.03 -19.35 5.79 31.14 0.18 -19.17 15 8 S 2.69 67.41 4.65 -107.50 -0.50 66.91 15 9 O -0.97 -26.54 16.88 -57.17 -0.97 -27.51 15 10 O -0.99 -27.32 18.02 -57.17 -1.03 -28.35 15 11 C -0.99 -25.82 9.31 30.60 0.28 -25.54 15 12 H 0.10 2.46 7.81 -52.49 -0.41 2.05 15 13 C 0.13 3.58 5.46 -17.81 -0.10 3.49 15 14 N -0.85 -23.80 13.19 55.43 0.73 -23.07 15 15 Si 0.92 19.82 29.54 -169.99 -5.02 14.80 15 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 18 H -0.26 -5.43 7.11 56.52 0.40 -5.02 15 19 C -0.15 -1.87 6.35 -39.22 -0.25 -2.12 15 20 Cl -0.05 -0.55 27.59 -51.86 -1.43 -1.98 15 21 C 0.02 0.18 9.69 -38.88 -0.38 -0.20 15 22 H 0.18 1.88 8.06 -52.49 -0.42 1.46 15 23 H 0.42 6.71 7.45 -34.47 -0.26 6.46 15 24 H 0.29 7.39 8.31 -40.82 -0.34 7.05 15 25 H 0.15 1.13 8.06 -52.49 -0.42 0.71 15 LS Contribution 273.65 15.07 4.12 4.12 Total: -1.00 -33.43 273.65 -6.60 -40.03 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -0.65 Total: 2.26 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -2.72 Total: -14.48 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 1.59 Total: -55.81 kcal Atomic # 8 Polarization: -53.86 SS G_CDS: -2.00 Total: -55.86 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 67.41 SS G_CDS: -0.50 Total: 66.91 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.43 Total: -1.98 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.43 -6.60 -40.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935109.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.879 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds