Wall clock time and date at job start Tue Mar 31 2020 03:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39593 * 120.48094 * 183.12673 * 3 2 1 5 5 N 1.31657 * 120.65920 * 179.76864 * 4 3 2 6 6 C 1.32544 * 121.79455 * 0.52454 * 5 4 3 7 7 N 1.38649 * 119.54510 * 179.75378 * 6 5 4 8 8 S 1.65606 * 120.00104 * 359.72625 * 7 6 5 9 9 O 1.42105 * 106.40008 * 311.45895 * 8 7 6 10 10 O 1.42098 * 106.40370 * 178.54081 * 8 7 6 11 11 C 1.76193 * 107.21910 * 65.00051 * 8 7 6 12 12 H 1.08002 * 120.00351 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00314 * 180.02562 * 11 8 7 14 14 N 1.31523 * 119.99660 * 359.97438 * 13 11 8 15 15 Si 1.86796 * 120.00522 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.46991 * 89.99398 * 15 13 11 17 17 H 1.48494 * 109.47334 * 210.00187 * 15 13 11 18 18 H 1.48506 * 109.46800 * 329.99864 * 15 13 11 19 19 C 1.39445 * 120.90881 * 359.47356 * 6 5 4 20 20 Cl 1.73602 * 120.37866 * 180.27822 * 19 6 5 21 21 C 1.37987 * 119.23559 * 0.25675 * 19 6 5 22 22 H 1.07998 * 119.66733 * 0.04761 * 4 3 2 23 23 H 0.97002 * 120.00285 * 179.72923 * 7 6 5 24 24 H 0.96997 * 119.99726 * 180.02562 * 14 13 11 25 25 H 1.08001 * 120.81408 * 179.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2755 1.2022 0.0656 5 7 4.5920 1.2066 0.0704 6 6 5.2944 0.0846 0.0035 7 7 6.6796 0.1439 0.0067 8 16 7.4455 1.6100 0.0869 9 8 6.8308 2.4378 -0.8910 10 8 8.8393 1.3341 0.1066 11 6 7.0561 2.3169 1.6531 12 1 6.4202 1.7828 2.3436 13 6 7.5632 3.5520 1.9974 14 7 8.3380 4.2022 1.1567 15 14 7.1499 4.3018 3.6575 16 1 8.1654 3.8826 4.6567 17 1 7.1476 5.7825 3.5452 18 1 5.8078 3.8362 4.0906 19 6 4.6594 -1.1551 -0.0642 20 17 5.5929 -2.6165 -0.1441 21 6 3.2805 -1.2066 -0.0665 22 1 2.7375 2.1372 0.1175 23 1 7.2002 -0.6734 -0.0380 24 1 8.6951 5.0709 1.3990 25 1 2.7623 -2.1528 -0.1186 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192935109.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:42 Heat of formation + Delta-G solvation = -52.278019 kcal Electronic energy + Delta-G solvation = -17781.473601 eV Core-core repulsion = 14525.787141 eV Total energy + Delta-G solvation = -3255.686460 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 286.992 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.68915 -38.06738 -37.70166 -37.40028 -36.33350 -36.17690 -35.11679 -33.61300 -31.13204 -28.23030 -25.32311 -25.15322 -21.13104 -20.32399 -19.91732 -19.51729 -18.42079 -17.36986 -16.79032 -16.35100 -16.25609 -15.79966 -15.73795 -15.34903 -14.63491 -14.40485 -14.08944 -13.97049 -13.68308 -13.36169 -13.18975 -12.97664 -12.87436 -12.60305 -12.42687 -12.42230 -12.26978 -12.25184 -11.19786 -10.93542 -10.83877 -10.70590 -9.49623 -8.71804 -7.40980 -0.53770 -0.05949 0.06760 0.82961 1.38353 1.39046 1.54928 1.61641 1.81937 2.16843 2.35231 2.63536 2.69612 2.74008 3.30561 3.39339 3.63162 3.66893 4.08544 4.23421 4.42976 4.66159 4.83573 5.18128 5.32021 5.67891 5.92910 6.38963 6.72318 6.82914 8.25601 Molecular weight = 286.99amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.006750 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.694611 B = 4147.436452 C = 5136.150316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.298 3.702 3 C -0.108 4.108 4 C 0.211 3.789 5 N -0.526 5.526 6 C 0.420 3.580 7 N -1.030 6.030 8 S 2.705 3.295 9 O -1.002 7.002 10 O -1.030 7.030 11 C -1.007 5.007 12 H 0.117 0.883 13 C 0.076 3.924 14 N -0.893 5.893 15 Si 0.989 3.011 16 H -0.257 1.257 17 H -0.265 1.265 18 H -0.249 1.249 19 C -0.136 4.136 20 Cl -0.032 7.032 21 C 0.037 3.963 22 H 0.199 0.801 23 H 0.435 0.565 24 H 0.299 0.701 25 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.246 -11.238 0.799 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.018 4.018 3 C -0.116 4.116 4 C 0.049 3.951 5 N -0.241 5.241 6 C 0.185 3.815 7 N -0.773 5.773 8 S 2.807 3.193 9 O -0.992 6.992 10 O -1.020 7.020 11 C -1.142 5.142 12 H 0.135 0.865 13 C -0.137 4.137 14 N -0.525 5.525 15 Si 0.808 3.192 16 H -0.181 1.181 17 H -0.189 1.189 18 H -0.172 1.172 19 C -0.171 4.171 20 Cl -0.003 7.003 21 C 0.009 3.991 22 H 0.216 0.784 23 H 0.274 0.726 24 H 0.109 0.891 25 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -9.722 -9.945 0.044 13.907 hybrid contribution 0.459 -0.663 0.906 1.213 sum -9.262 -10.608 0.950 14.115 Atomic orbital electron populations 1.81316 1.12535 1.07836 1.10652 1.24861 0.91405 0.93129 0.92393 1.16585 0.85381 0.94783 1.14832 1.23224 0.86672 0.98788 0.86423 1.67616 1.10329 1.27033 1.19163 1.18188 0.84661 0.89423 0.89223 1.53948 1.11298 1.29355 1.82717 1.00690 0.71163 0.70568 0.76883 1.93354 1.77315 1.65064 1.63438 1.93368 1.34142 1.84570 1.89914 1.30435 1.44160 1.14880 1.24754 0.86521 1.25884 0.89840 0.95080 1.02880 1.69975 1.28465 1.15852 1.38219 0.85139 0.80351 0.77751 0.75977 1.18131 1.18887 1.17185 1.21131 0.93450 0.86956 1.15562 1.98379 1.72478 1.32436 1.97022 1.21596 0.89789 0.99586 0.88086 0.78427 0.72617 0.89122 0.78756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.84 18.54 19.00 0.35 -10.49 15 2 C 0.30 5.92 15.37 88.33 1.36 7.28 15 3 C -0.11 -2.07 5.75 -21.20 -0.12 -2.20 15 4 C 0.21 5.25 10.91 85.05 0.93 6.18 15 5 N -0.53 -18.51 8.26 -192.16 -1.59 -20.10 15 6 C 0.42 13.85 7.33 133.22 0.98 14.83 15 7 N -1.03 -38.95 5.79 -55.38 -0.32 -39.27 15 8 S 2.70 139.45 4.65 -56.49 -0.26 139.19 15 9 O -1.00 -57.05 16.88 -128.00 -2.16 -59.21 15 10 O -1.03 -58.82 18.02 -128.00 -2.31 -61.13 15 11 C -1.01 -52.90 9.31 67.74 0.63 -52.27 15 12 H 0.12 5.57 7.81 -2.91 -0.02 5.55 15 13 C 0.08 4.07 5.46 84.65 0.46 4.53 15 14 N -0.89 -51.43 13.19 21.45 0.28 -51.14 15 15 Si 0.99 39.94 29.54 68.60 2.03 41.97 15 16 H -0.26 -9.84 7.11 99.48 0.71 -9.14 15 17 H -0.26 -10.14 7.11 99.48 0.71 -9.43 15 18 H -0.25 -9.39 7.11 99.48 0.71 -8.68 15 19 C -0.14 -3.20 6.35 22.50 0.14 -3.05 15 20 Cl -0.03 -0.65 27.59 -2.72 -0.08 -0.72 15 21 C 0.04 0.64 9.69 22.72 0.22 0.86 15 22 H 0.20 3.86 8.06 -2.91 -0.02 3.84 15 23 H 0.44 13.85 7.45 -96.74 -0.72 13.13 15 24 H 0.30 15.47 8.31 -92.71 -0.77 14.70 15 25 H 0.20 1.80 8.06 -2.91 -0.02 1.78 15 Total: -1.00 -74.10 273.65 1.10 -73.00 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.56 Total: 11.75 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 4.60 Total: -23.84 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -1.27 Total: -121.01 kcal Atomic # 8 Polarization: -115.87 SS G_CDS: -4.47 Total: -120.34 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Atomic # 16 Polarization: 139.45 SS G_CDS: -0.26 Total: 139.19 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.72 kcal Total: -74.10 1.10 -73.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935109.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.721 kcal (2) G-P(sol) polarization free energy of solvation -74.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds