Wall clock time and date at job start Tue Mar 31 2020 03:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34685 * 117.00150 * 2 1 4 4 O 1.21439 * 119.99928 * 359.97438 * 3 2 1 5 5 C 1.48028 * 120.00295 * 180.02562 * 3 2 1 6 6 C 1.39285 * 120.04871 * 179.97438 * 5 3 2 7 7 N 1.32198 * 120.05606 * 180.02562 * 6 5 3 8 8 C 1.31922 * 120.16948 * 359.97438 * 7 6 5 9 9 C 1.39685 * 120.10248 * 359.97438 * 8 7 6 10 10 N 1.38978 * 120.03228 * 179.97438 * 9 8 7 11 11 S 1.65597 * 119.99997 * 180.27720 * 10 9 8 12 12 O 1.42096 * 106.40195 * 178.26389 * 11 10 9 13 13 O 1.42108 * 106.40105 * 311.18445 * 11 10 9 14 14 C 1.76199 * 107.22117 * 64.72145 * 11 10 9 15 15 H 1.08002 * 120.00179 * 0.02562 * 14 11 10 16 16 C 1.37873 * 120.00184 * 180.02562 * 14 11 10 17 17 N 1.31521 * 120.00165 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 120.00205 * 0.02562 * 16 14 11 19 19 H 1.48497 * 109.46987 * 89.99899 * 18 16 14 20 20 H 1.48500 * 109.47244 * 210.00008 * 18 16 14 21 21 H 1.48498 * 109.46529 * 330.00134 * 18 16 14 22 22 N 1.32321 * 119.93731 * 0.27383 * 9 8 7 23 23 H 1.09004 * 109.47438 * 60.00045 * 1 2 3 24 24 H 1.09002 * 109.47334 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47129 * 299.99975 * 1 2 3 26 26 H 1.07996 * 119.97248 * 0.04284 * 6 5 3 27 27 H 1.08001 * 119.94825 * 179.97438 * 8 7 6 28 28 H 0.97001 * 119.99718 * 359.97438 * 10 9 8 29 29 H 0.96998 * 119.99908 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4021 2.2185 -0.0005 5 6 3.5417 1.2775 -0.0006 6 6 4.1751 2.5181 -0.0011 7 7 5.4952 2.5875 -0.0021 8 6 6.2172 1.4833 -0.0021 9 6 5.5891 0.2356 -0.0005 10 7 6.3511 -0.9267 -0.0011 11 16 5.6057 -2.4054 -0.0061 12 8 6.6419 -3.3769 -0.0468 13 8 4.6209 -2.3618 1.0175 14 6 4.7330 -2.5445 -1.5304 15 1 4.7630 -1.7358 -2.2456 16 6 4.0117 -3.6857 -1.8102 17 7 3.3607 -3.7898 -2.9483 18 14 3.9591 -5.0843 -0.5730 19 1 2.8132 -4.8854 0.3503 20 1 3.7984 -6.3743 -1.2907 21 1 5.2239 -5.1047 0.2049 22 7 4.2680 0.1613 -0.0045 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.5872 3.4240 -0.0004 27 1 7.2954 1.5442 -0.0034 28 1 7.3195 -0.8717 -0.0029 29 1 2.8530 -4.5925 -3.1449 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192939491.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:18 Heat of formation + Delta-G solvation = -97.146461 kcal Electronic energy + Delta-G solvation = -20974.702229 eV Core-core repulsion = 17412.194057 eV Total energy + Delta-G solvation = -3562.508171 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.045 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29461 -39.88099 -36.41442 -35.91443 -35.52923 -34.58785 -33.96609 -33.03641 -30.15853 -27.82847 -26.45729 -25.49309 -23.98797 -21.54470 -19.65340 -18.58698 -18.13434 -17.21206 -16.92307 -16.87198 -16.33659 -16.30286 -16.10477 -15.15563 -14.85491 -14.11231 -13.68153 -13.46540 -13.12489 -13.06356 -12.91334 -12.02494 -11.98285 -11.89449 -11.56276 -11.41008 -10.92671 -10.83555 -10.79494 -10.68958 -10.58192 -10.56976 -10.02427 -9.22797 -9.15515 -9.07697 -8.48970 -6.80599 -5.33543 0.31678 1.16051 1.67905 2.45534 2.66288 3.04476 3.16476 3.22642 3.41144 3.76315 3.93288 4.18295 4.28362 4.32501 4.59706 4.96997 5.03132 5.11137 5.24016 5.27813 5.36343 5.66219 5.71548 6.00827 6.28501 6.38797 6.80387 7.33013 7.46124 7.61117 7.88365 8.18305 8.68606 10.31773 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.008400 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.321382 B = 3332.492955 C = 4522.110710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.313 6.313 3 C 0.533 3.467 4 O -0.503 6.503 5 C 0.092 3.908 6 C 0.063 3.937 7 N -0.412 5.412 8 C 0.049 3.951 9 C 0.354 3.646 10 N -1.025 6.025 11 S 2.654 3.346 12 O -0.996 6.996 13 O -0.974 6.974 14 C -0.989 4.989 15 H 0.120 0.880 16 C 0.157 3.843 17 N -0.820 5.820 18 Si 0.802 3.198 19 H -0.244 1.244 20 H -0.255 1.255 21 H -0.224 1.224 22 N -0.407 5.407 23 H 0.064 0.936 24 H 0.105 0.895 25 H 0.062 0.938 26 H 0.185 0.815 27 H 0.180 0.820 28 H 0.429 0.571 29 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 9.040 4.639 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.226 6.226 3 C 0.375 3.625 4 O -0.391 6.391 5 C -0.048 4.048 6 C -0.097 4.097 7 N -0.125 5.125 8 C -0.121 4.121 9 C 0.113 3.887 10 N -0.767 5.767 11 S 2.757 3.243 12 O -0.986 6.986 13 O -0.964 6.964 14 C -1.125 5.125 15 H 0.138 0.862 16 C -0.062 4.062 17 N -0.449 5.449 18 Si 0.622 3.378 19 H -0.168 1.168 20 H -0.179 1.179 21 H -0.146 1.146 22 N -0.130 5.130 23 H 0.083 0.917 24 H 0.123 0.877 25 H 0.081 0.919 26 H 0.201 0.799 27 H 0.197 0.803 28 H 0.264 0.736 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.211 8.502 5.234 9.986 hybrid contribution -0.067 -0.553 -0.342 0.653 sum 0.144 7.950 4.892 9.335 Atomic orbital electron populations 1.23373 0.76153 1.04267 1.02151 1.86865 1.23040 1.30581 1.82127 1.20527 0.87292 0.82149 0.72544 1.90826 1.65621 1.36211 1.46451 1.20818 0.92047 0.90069 1.01900 1.23487 0.90988 0.97569 0.97656 1.68492 1.06034 1.29797 1.08163 1.23680 1.01896 0.86888 0.99616 1.18959 0.88620 0.88079 0.93021 1.53952 1.17469 1.21240 1.84061 1.02307 0.74249 0.69991 0.77759 1.93525 1.59983 1.55513 1.89629 1.93467 1.59073 1.83775 1.60056 1.29958 1.46423 1.12340 1.23756 0.86241 1.24329 0.90700 0.96698 0.94494 1.69977 1.25210 1.28303 1.21418 0.87877 0.83649 0.83299 0.83013 1.16776 1.17931 1.14593 1.68131 1.04266 1.30673 1.09948 0.91745 0.87651 0.91899 0.79851 0.80324 0.73620 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 101.05 1.07 1.54 15 2 O -0.31 -5.96 10.40 -40.45 -0.42 -6.38 15 3 C 0.53 9.53 7.95 34.75 0.28 9.81 15 4 O -0.50 -8.60 16.12 -19.22 -0.31 -8.91 15 5 C 0.09 1.64 6.75 -82.88 -0.56 1.08 15 6 C 0.06 0.90 10.76 -17.01 -0.18 0.72 15 7 N -0.41 -5.74 10.48 -12.53 -0.13 -5.87 15 8 C 0.05 0.65 11.09 -16.97 -0.19 0.47 15 9 C 0.35 6.24 7.33 -154.90 -1.14 5.10 15 10 N -1.03 -18.30 5.85 31.22 0.18 -18.12 15 11 S 2.65 64.27 3.87 -107.50 -0.42 63.86 15 12 O -1.00 -25.30 16.02 -57.17 -0.92 -26.22 15 13 O -0.97 -25.57 15.73 -57.17 -0.90 -26.47 15 14 C -0.99 -27.06 9.86 30.60 0.30 -26.76 15 15 H 0.12 3.36 8.06 -52.49 -0.42 2.93 15 16 C 0.16 4.44 5.47 -17.82 -0.10 4.34 15 17 N -0.82 -23.28 13.96 55.43 0.77 -22.50 15 18 Si 0.80 20.22 26.54 -169.99 -4.51 15.70 15 19 H -0.24 -6.04 7.11 56.52 0.40 -5.64 15 20 H -0.26 -5.91 7.11 56.52 0.40 -5.51 15 21 H -0.22 -5.70 5.61 56.52 0.32 -5.38 15 22 N -0.41 -8.34 8.30 -8.83 -0.07 -8.42 15 23 H 0.06 0.81 8.14 -51.93 -0.42 0.38 15 24 H 0.11 1.28 8.14 -51.93 -0.42 0.86 15 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 26 H 0.18 2.15 7.63 -52.49 -0.40 1.75 15 27 H 0.18 1.58 8.06 -52.49 -0.42 1.16 15 28 H 0.43 5.54 8.83 -34.47 -0.30 5.23 15 29 H 0.28 7.22 8.31 -40.82 -0.34 6.89 15 LS Contribution 282.18 15.07 4.25 4.25 Total: -1.00 -34.75 282.18 -5.03 -39.78 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -2.04 Total: 3.00 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -0.52 Total: -3.70 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.75 Total: -54.91 kcal Atomic # 8 Polarization: -65.44 SS G_CDS: -2.55 Total: -67.99 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.51 Total: 15.70 kcal Atomic # 16 Polarization: 64.27 SS G_CDS: -0.42 Total: 63.86 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -34.75 -5.03 -39.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939491.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.369 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds