Wall clock time and date at job start Tue Mar 31 2020 03:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34685 * 117.00150 * 2 1 4 4 O 1.21439 * 119.99928 * 359.97438 * 3 2 1 5 5 C 1.48028 * 120.00295 * 180.02562 * 3 2 1 6 6 C 1.39285 * 120.04871 * 179.97438 * 5 3 2 7 7 N 1.32198 * 120.05606 * 180.02562 * 6 5 3 8 8 C 1.31922 * 120.16948 * 359.97438 * 7 6 5 9 9 C 1.39685 * 120.10248 * 359.97438 * 8 7 6 10 10 N 1.38978 * 120.03228 * 179.97438 * 9 8 7 11 11 S 1.65597 * 119.99997 * 180.27720 * 10 9 8 12 12 O 1.42096 * 106.40195 * 178.26389 * 11 10 9 13 13 O 1.42108 * 106.40105 * 311.18445 * 11 10 9 14 14 C 1.76199 * 107.22117 * 64.72145 * 11 10 9 15 15 H 1.08002 * 120.00179 * 0.02562 * 14 11 10 16 16 C 1.37873 * 120.00184 * 180.02562 * 14 11 10 17 17 N 1.31521 * 120.00165 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 120.00205 * 0.02562 * 16 14 11 19 19 H 1.48497 * 109.46987 * 89.99899 * 18 16 14 20 20 H 1.48500 * 109.47244 * 210.00008 * 18 16 14 21 21 H 1.48498 * 109.46529 * 330.00134 * 18 16 14 22 22 N 1.32321 * 119.93731 * 0.27383 * 9 8 7 23 23 H 1.09004 * 109.47438 * 60.00045 * 1 2 3 24 24 H 1.09002 * 109.47334 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47129 * 299.99975 * 1 2 3 26 26 H 1.07996 * 119.97248 * 0.04284 * 6 5 3 27 27 H 1.08001 * 119.94825 * 179.97438 * 8 7 6 28 28 H 0.97001 * 119.99718 * 359.97438 * 10 9 8 29 29 H 0.96998 * 119.99908 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4021 2.2185 -0.0005 5 6 3.5417 1.2775 -0.0006 6 6 4.1751 2.5181 -0.0011 7 7 5.4952 2.5875 -0.0021 8 6 6.2172 1.4833 -0.0021 9 6 5.5891 0.2356 -0.0005 10 7 6.3511 -0.9267 -0.0011 11 16 5.6057 -2.4054 -0.0061 12 8 6.6419 -3.3769 -0.0468 13 8 4.6209 -2.3618 1.0175 14 6 4.7330 -2.5445 -1.5304 15 1 4.7630 -1.7358 -2.2456 16 6 4.0117 -3.6857 -1.8102 17 7 3.3607 -3.7898 -2.9483 18 14 3.9591 -5.0843 -0.5730 19 1 2.8132 -4.8854 0.3503 20 1 3.7984 -6.3743 -1.2907 21 1 5.2239 -5.1047 0.2049 22 7 4.2680 0.1613 -0.0045 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.5872 3.4240 -0.0004 27 1 7.2954 1.5442 -0.0034 28 1 7.3195 -0.8717 -0.0029 29 1 2.8530 -4.5925 -3.1449 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192939491.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:17 Heat of formation + Delta-G solvation = -126.214906 kcal Electronic energy + Delta-G solvation = -20975.962731 eV Core-core repulsion = 17412.194057 eV Total energy + Delta-G solvation = -3563.768674 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.045 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.55488 -41.18844 -37.85820 -37.67269 -36.97876 -36.57421 -35.28854 -35.11177 -31.46686 -28.98598 -28.55279 -26.72476 -25.27761 -22.85968 -21.36781 -20.02366 -19.92148 -18.91578 -18.47172 -18.00755 -17.78346 -17.61158 -17.53522 -16.95096 -16.32266 -15.93525 -15.44190 -14.96644 -14.88390 -14.31759 -14.16842 -13.84214 -13.42069 -13.35159 -13.05207 -12.96161 -12.83134 -12.70446 -12.57773 -12.15701 -12.12199 -11.91877 -11.83284 -11.30532 -11.14068 -10.39780 -9.83049 -8.92111 -7.46042 -0.90150 -0.16816 -0.07175 1.06181 1.16002 1.16922 1.20951 1.45819 1.90162 1.96273 2.46385 2.51524 2.81584 3.06033 3.11166 3.24101 3.68080 3.83306 4.02581 4.21147 4.28816 4.31553 4.47929 4.65459 5.10036 5.11832 5.39855 5.52238 6.02154 6.11866 6.36406 6.57131 6.61382 8.25827 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.008400 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.321382 B = 3332.492955 C = 4522.110710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.349 6.349 3 C 0.530 3.470 4 O -0.503 6.503 5 C 0.060 3.940 6 C 0.089 3.911 7 N -0.410 5.410 8 C 0.088 3.912 9 C 0.324 3.676 10 N -1.012 6.012 11 S 2.686 3.314 12 O -1.011 7.011 13 O -0.999 6.999 14 C -1.009 5.009 15 H 0.098 0.902 16 C 0.114 3.886 17 N -0.853 5.853 18 Si 0.825 3.175 19 H -0.242 1.242 20 H -0.221 1.221 21 H -0.228 1.228 22 N -0.457 5.457 23 H 0.073 0.927 24 H 0.116 0.884 25 H 0.080 0.920 26 H 0.212 0.788 27 H 0.234 0.766 28 H 0.451 0.549 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.861 10.262 5.363 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.264 6.264 3 C 0.373 3.627 4 O -0.392 6.392 5 C -0.079 4.079 6 C -0.069 4.069 7 N -0.123 5.123 8 C -0.082 4.082 9 C 0.084 3.916 10 N -0.763 5.763 11 S 2.786 3.214 12 O -1.001 7.001 13 O -0.988 6.988 14 C -1.143 5.143 15 H 0.117 0.883 16 C -0.103 4.103 17 N -0.483 5.483 18 Si 0.642 3.358 19 H -0.165 1.165 20 H -0.143 1.143 21 H -0.150 1.150 22 N -0.181 5.181 23 H 0.092 0.908 24 H 0.134 0.866 25 H 0.099 0.901 26 H 0.228 0.772 27 H 0.250 0.750 28 H 0.291 0.709 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.370 9.740 5.931 11.485 hybrid contribution -0.404 -0.753 -0.583 1.035 sum 0.966 8.986 5.348 10.502 Atomic orbital electron populations 1.23670 0.74008 1.05543 1.03502 1.86826 1.25552 1.31655 1.82331 1.20677 0.87703 0.81927 0.72441 1.90798 1.65760 1.35847 1.46791 1.20985 0.91864 0.90578 1.04447 1.23913 0.91432 0.97201 0.94390 1.68722 1.05611 1.29349 1.08595 1.24443 1.04031 0.84639 0.95060 1.19313 0.88147 0.89042 0.95114 1.53171 1.18650 1.19769 1.84660 1.01131 0.73487 0.70882 0.75899 1.93496 1.59825 1.57383 1.89418 1.93433 1.60475 1.84936 1.59958 1.30467 1.46940 1.11563 1.25281 0.88345 1.25052 0.90721 0.98697 0.95834 1.70010 1.26184 1.29542 1.22601 0.87511 0.83448 0.82946 0.81918 1.16546 1.14328 1.15008 1.67873 1.06193 1.32850 1.11190 0.90811 0.86552 0.90129 0.77151 0.74998 0.70860 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.90 15 2 O -0.35 -13.64 10.40 -55.94 -0.58 -14.23 15 3 C 0.53 19.05 7.95 70.42 0.56 19.61 15 4 O -0.50 -16.91 16.12 20.03 0.32 -16.59 15 5 C 0.06 2.10 6.75 41.79 0.28 2.38 15 6 C 0.09 2.36 10.76 84.89 0.91 3.27 15 7 N -0.41 -9.93 10.48 -193.55 -2.03 -11.96 15 8 C 0.09 2.02 11.09 85.03 0.94 2.96 15 9 C 0.32 10.88 7.33 133.23 0.98 11.86 15 10 N -1.01 -34.55 5.85 -55.14 -0.32 -34.87 15 11 S 2.69 129.22 3.87 -56.49 -0.22 129.00 15 12 O -1.01 -50.55 16.02 -128.00 -2.05 -52.60 15 13 O -1.00 -52.58 15.73 -128.00 -2.01 -54.59 15 14 C -1.01 -56.22 9.86 67.73 0.67 -55.56 15 15 H 0.10 5.73 8.06 -2.91 -0.02 5.71 15 16 C 0.11 6.48 5.47 84.65 0.46 6.95 15 17 N -0.85 -49.23 13.96 21.45 0.30 -48.93 15 18 Si 0.82 40.77 26.54 68.60 1.82 42.59 15 19 H -0.24 -11.77 7.11 99.48 0.71 -11.06 15 20 H -0.22 -9.63 7.11 99.48 0.71 -8.92 15 21 H -0.23 -11.36 5.61 99.48 0.56 -10.81 15 22 N -0.46 -18.67 8.30 -181.83 -1.51 -20.18 15 23 H 0.07 1.85 8.14 -2.39 -0.02 1.83 15 24 H 0.12 2.85 8.14 -2.39 -0.02 2.83 15 25 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 26 H 0.21 4.31 7.63 -2.91 -0.02 4.29 15 27 H 0.23 2.71 8.06 -2.91 -0.02 2.68 15 28 H 0.45 10.45 8.83 -96.74 -0.85 9.59 15 29 H 0.29 15.08 8.31 -92.71 -0.77 14.31 15 Total: -1.00 -76.59 282.18 -0.06 -76.65 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.22 Total: 12.33 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 6.00 Total: -6.61 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -3.56 Total: -115.94 kcal Atomic # 8 Polarization: -133.68 SS G_CDS: -4.32 Total: -138.01 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.82 Total: 42.59 kcal Atomic # 16 Polarization: 129.22 SS G_CDS: -0.22 Total: 129.00 kcal Total: -76.59 -0.06 -76.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939491.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.568 kcal (2) G-P(sol) polarization free energy of solvation -76.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds