Wall clock time and date at job start Tue Mar 31 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34691 * 117.00231 * 2 1 4 4 O 1.21429 * 119.99979 * 0.02562 * 3 2 1 5 5 C 1.48097 * 119.99832 * 180.27893 * 3 2 1 6 6 N 1.32616 * 119.08852 * 359.45517 * 5 3 2 7 7 C 1.31875 * 120.85939 * 179.75941 * 6 5 3 8 8 C 1.39704 * 119.05250 * 0.50396 * 7 6 5 9 9 N 1.39049 * 120.82500 * 179.72643 * 8 7 6 10 10 S 1.65601 * 120.00108 * 313.93793 * 9 8 7 11 11 O 1.42090 * 106.40560 * 51.89673 * 10 9 8 12 12 O 1.42102 * 106.40044 * 184.81756 * 10 9 8 13 13 C 1.76204 * 107.21842 * 298.35525 * 10 9 8 14 14 H 1.08000 * 119.99512 * 5.22073 * 13 10 9 15 15 C 1.37870 * 120.00359 * 185.22125 * 13 10 9 16 16 N 1.31515 * 120.00226 * 180.02562 * 15 13 10 17 17 Si 1.86804 * 119.99719 * 359.97438 * 15 13 10 18 18 H 1.48506 * 109.46969 * 90.00532 * 17 15 13 19 19 H 1.48496 * 109.47120 * 210.00181 * 17 15 13 20 20 H 1.48500 * 109.47300 * 330.00525 * 17 15 13 21 21 C 1.39694 * 118.34515 * 359.75506 * 8 7 6 22 22 N 1.31868 * 119.06035 * 359.97438 * 21 8 7 23 23 H 1.08999 * 109.47801 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46930 * 299.99530 * 1 2 3 25 25 H 1.08999 * 109.47529 * 59.99196 * 1 2 3 26 26 H 1.08003 * 120.47423 * 180.23679 * 7 6 5 27 27 H 0.97000 * 119.99571 * 133.93397 * 9 8 7 28 28 H 0.97001 * 119.99419 * 180.02562 * 16 15 13 29 29 H 1.08004 * 120.46893 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4022 2.2185 0.0005 5 6 3.5424 1.2775 -0.0062 6 7 4.2469 0.1539 -0.0008 7 6 5.5653 0.1821 -0.0108 8 6 6.2175 1.4176 -0.0166 9 7 7.6060 1.4902 -0.0215 10 16 8.4884 0.5428 1.0110 11 8 8.0290 -0.7889 0.8254 12 8 9.8467 0.9266 0.8459 13 6 8.0382 1.0003 2.6520 14 1 7.2450 1.7148 2.8150 15 6 8.6985 0.4460 3.7280 16 7 8.3621 0.7870 4.9528 17 14 10.0700 -0.7905 3.4460 18 1 11.3667 -0.0750 3.3361 19 1 10.1234 -1.7393 4.5871 20 1 9.8104 -1.5402 2.1907 21 6 5.4398 2.5780 -0.0168 22 7 4.1257 2.4685 -0.0120 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 6.1328 -0.7368 -0.0101 27 1 8.0578 2.0959 -0.6298 28 1 8.8270 0.3973 5.7097 29 1 5.9082 3.5512 -0.0208 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192939688.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:20 Heat of formation + Delta-G solvation = -99.586454 kcal Electronic energy + Delta-G solvation = -20309.064011 eV Core-core repulsion = 16746.450033 eV Total energy + Delta-G solvation = -3562.613977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.045 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29583 -40.00904 -36.57593 -36.17125 -35.64415 -34.87015 -33.80340 -33.24793 -30.38034 -27.86239 -26.66875 -24.81328 -24.68483 -21.70032 -19.72179 -18.68384 -18.19394 -18.05676 -17.19329 -16.98090 -16.58948 -16.45959 -15.43591 -15.20141 -14.65673 -14.38162 -13.72510 -13.65616 -13.57719 -13.20679 -13.06117 -12.30835 -12.21400 -11.66351 -11.61055 -11.42120 -11.04324 -11.01413 -10.89198 -10.86840 -10.79782 -10.69152 -10.17292 -9.45193 -9.39754 -9.23764 -8.60740 -6.99319 -5.59670 0.30106 1.08322 1.52086 2.24908 2.29731 2.94807 3.02525 3.09531 3.68536 3.77577 3.80158 3.98110 4.29175 4.38993 4.41389 4.75357 4.98035 4.99957 5.04053 5.07876 5.38444 5.49627 5.74457 6.05079 6.12051 6.31071 6.78000 7.12151 7.27238 7.49784 7.96348 7.96726 8.47530 10.12398 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.026823 B = 0.004867 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.632811 B = 5751.578434 C = 6051.160242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.332 6.332 3 C 0.545 3.455 4 O -0.477 6.477 5 C 0.254 3.746 6 N -0.441 5.441 7 C 0.119 3.881 8 C 0.112 3.888 9 N -1.047 6.047 10 S 2.660 3.340 11 O -0.993 6.993 12 O -0.991 6.991 13 C -1.013 5.013 14 H 0.123 0.877 15 C 0.153 3.847 16 N -0.812 5.812 17 Si 0.815 3.185 18 H -0.244 1.244 19 H -0.254 1.254 20 H -0.230 1.230 21 C 0.124 3.876 22 N -0.445 5.445 23 H 0.106 0.894 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.208 0.792 27 H 0.424 0.576 28 H 0.285 0.715 29 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 -0.154 -9.347 12.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.247 6.247 3 C 0.385 3.615 4 O -0.361 6.361 5 C -0.013 4.013 6 N -0.157 5.157 7 C -0.052 4.052 8 C 0.007 3.993 9 N -0.792 5.792 10 S 2.763 3.237 11 O -0.982 6.982 12 O -0.981 6.981 13 C -1.148 5.148 14 H 0.141 0.859 15 C -0.068 4.068 16 N -0.440 5.440 17 Si 0.636 3.364 18 H -0.168 1.168 19 H -0.178 1.178 20 H -0.152 1.152 21 C -0.047 4.047 22 N -0.161 5.161 23 H 0.124 0.876 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.225 0.775 27 H 0.260 0.740 28 H 0.095 0.905 29 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.527 -0.685 -9.321 12.651 hybrid contribution 1.298 0.394 0.440 1.426 sum -7.229 -0.291 -8.881 11.455 Atomic orbital electron populations 1.23367 0.75716 1.04073 1.02673 1.86669 1.23305 1.31096 1.83611 1.19810 0.86242 0.81934 0.73545 1.90858 1.65296 1.36065 1.43833 1.21133 0.92684 0.85427 1.02056 1.68394 1.07754 1.30474 1.09100 1.24442 0.89555 0.98796 0.92361 1.19528 0.85762 0.96335 0.97629 1.53537 1.10961 1.60566 1.54146 1.02150 0.72416 0.73044 0.76069 1.93435 1.81268 1.36079 1.87423 1.93454 1.33943 1.83165 1.87518 1.30147 1.33045 1.40907 1.10677 0.85914 1.24415 0.94631 0.93518 0.94228 1.69969 1.37423 1.37889 0.98685 0.87651 0.83829 0.82384 0.82581 1.16754 1.17827 1.15222 1.23446 0.87714 0.98956 0.94608 1.67946 1.11696 1.26650 1.09803 0.87606 0.91619 0.91732 0.77518 0.74008 0.90478 0.79825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 15 2 O -0.33 -4.68 10.36 -40.47 -0.42 -5.10 15 3 C 0.55 8.89 7.98 34.78 0.28 9.17 15 4 O -0.48 -8.33 16.65 -19.21 -0.32 -8.65 15 5 C 0.25 4.42 7.58 -157.01 -1.19 3.23 15 6 N -0.44 -7.77 10.14 -11.01 -0.11 -7.89 15 7 C 0.12 2.08 10.50 -16.99 -0.18 1.90 15 8 C 0.11 1.82 6.18 -83.50 -0.52 1.31 15 9 N -1.05 -16.84 5.77 32.60 0.19 -16.65 15 10 S 2.66 58.28 4.11 -107.50 -0.44 57.83 15 11 O -0.99 -22.83 13.78 -57.17 -0.79 -23.62 15 12 O -0.99 -23.33 16.37 -57.17 -0.94 -24.26 15 13 C -1.01 -26.01 10.15 30.60 0.31 -25.70 15 14 H 0.12 3.24 8.06 -52.49 -0.42 2.81 15 15 C 0.15 4.13 5.47 -17.82 -0.10 4.03 15 16 N -0.81 -22.27 13.96 55.43 0.77 -21.50 15 17 Si 0.82 19.43 26.32 -169.99 -4.47 14.95 15 18 H -0.24 -5.70 7.11 56.52 0.40 -5.30 15 19 H -0.25 -5.60 7.11 56.52 0.40 -5.20 15 20 H -0.23 -5.44 5.89 56.52 0.33 -5.11 15 21 C 0.12 1.84 11.26 -16.99 -0.19 1.65 15 22 N -0.44 -7.50 10.11 -11.01 -0.11 -7.61 15 23 H 0.11 0.68 8.14 -51.93 -0.42 0.25 15 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 15 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 15 26 H 0.21 3.65 5.82 -52.48 -0.31 3.35 15 27 H 0.42 5.13 8.95 -34.47 -0.31 4.83 15 28 H 0.28 7.06 8.31 -40.82 -0.34 6.72 15 29 H 0.18 2.02 8.06 -52.48 -0.42 1.60 15 LS Contribution 280.97 15.07 4.23 4.23 Total: -1.00 -32.17 280.97 -4.86 -37.02 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -1.93 Total: 4.25 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.52 Total: -3.02 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.74 Total: -53.65 kcal Atomic # 8 Polarization: -59.16 SS G_CDS: -2.46 Total: -61.63 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.47 Total: 14.95 kcal Atomic # 16 Polarization: 58.28 SS G_CDS: -0.44 Total: 57.83 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.17 -4.86 -37.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939688.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.565 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds