Wall clock time and date at job start Tue Mar 31 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34691 * 117.00231 * 2 1 4 4 O 1.21429 * 119.99979 * 0.02562 * 3 2 1 5 5 C 1.48097 * 119.99832 * 180.27893 * 3 2 1 6 6 N 1.32616 * 119.08852 * 359.45517 * 5 3 2 7 7 C 1.31875 * 120.85939 * 179.75941 * 6 5 3 8 8 C 1.39704 * 119.05250 * 0.50396 * 7 6 5 9 9 N 1.39049 * 120.82500 * 179.72643 * 8 7 6 10 10 S 1.65601 * 120.00108 * 313.93793 * 9 8 7 11 11 O 1.42090 * 106.40560 * 51.89673 * 10 9 8 12 12 O 1.42102 * 106.40044 * 184.81756 * 10 9 8 13 13 C 1.76204 * 107.21842 * 298.35525 * 10 9 8 14 14 H 1.08000 * 119.99512 * 5.22073 * 13 10 9 15 15 C 1.37870 * 120.00359 * 185.22125 * 13 10 9 16 16 N 1.31515 * 120.00226 * 180.02562 * 15 13 10 17 17 Si 1.86804 * 119.99719 * 359.97438 * 15 13 10 18 18 H 1.48506 * 109.46969 * 90.00532 * 17 15 13 19 19 H 1.48496 * 109.47120 * 210.00181 * 17 15 13 20 20 H 1.48500 * 109.47300 * 330.00525 * 17 15 13 21 21 C 1.39694 * 118.34515 * 359.75506 * 8 7 6 22 22 N 1.31868 * 119.06035 * 359.97438 * 21 8 7 23 23 H 1.08999 * 109.47801 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46930 * 299.99530 * 1 2 3 25 25 H 1.08999 * 109.47529 * 59.99196 * 1 2 3 26 26 H 1.08003 * 120.47423 * 180.23679 * 7 6 5 27 27 H 0.97000 * 119.99571 * 133.93397 * 9 8 7 28 28 H 0.97001 * 119.99419 * 180.02562 * 16 15 13 29 29 H 1.08004 * 120.46893 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4022 2.2185 0.0005 5 6 3.5424 1.2775 -0.0062 6 7 4.2469 0.1539 -0.0008 7 6 5.5653 0.1821 -0.0108 8 6 6.2175 1.4176 -0.0166 9 7 7.6060 1.4902 -0.0215 10 16 8.4884 0.5428 1.0110 11 8 8.0290 -0.7889 0.8254 12 8 9.8467 0.9266 0.8459 13 6 8.0382 1.0003 2.6520 14 1 7.2450 1.7148 2.8150 15 6 8.6985 0.4460 3.7280 16 7 8.3621 0.7870 4.9528 17 14 10.0700 -0.7905 3.4460 18 1 11.3667 -0.0750 3.3361 19 1 10.1234 -1.7393 4.5871 20 1 9.8104 -1.5402 2.1907 21 6 5.4398 2.5780 -0.0168 22 7 4.1257 2.4685 -0.0120 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 6.1328 -0.7368 -0.0101 27 1 8.0578 2.0959 -0.6298 28 1 8.8270 0.3973 5.7097 29 1 5.9082 3.5512 -0.0208 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192939688.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:20 Heat of formation + Delta-G solvation = -125.797735 kcal Electronic energy + Delta-G solvation = -20310.200617 eV Core-core repulsion = 16746.450033 eV Total energy + Delta-G solvation = -3563.750584 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.045 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.58339 -41.20510 -37.99382 -37.69020 -37.07464 -36.69458 -35.24364 -35.11071 -31.68014 -28.81231 -28.62870 -26.06185 -25.97911 -22.92524 -21.42897 -20.03968 -19.77277 -19.48424 -18.79748 -18.40556 -17.83489 -17.68293 -17.25332 -16.38822 -16.16750 -15.90943 -15.53098 -15.00313 -14.91781 -14.72086 -14.28848 -13.89828 -13.49543 -13.22745 -13.13785 -12.91817 -12.81018 -12.70003 -12.58942 -12.22305 -12.02986 -11.88363 -11.86274 -11.38059 -11.28617 -10.60028 -9.98713 -8.99786 -7.60916 -1.04255 -0.19936 -0.16520 1.02641 1.07711 1.13912 1.15700 1.20568 1.86886 2.14152 2.39459 2.48121 2.71151 3.00294 3.05238 3.25679 3.61055 3.76642 3.98347 4.27019 4.29557 4.35817 4.67861 4.72447 4.99014 5.05400 5.30567 5.52274 5.89785 5.95674 6.29372 6.48227 6.68450 8.17446 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.026823 B = 0.004867 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.632811 B = 5751.578434 C = 6051.160242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.339 6.339 3 C 0.547 3.453 4 O -0.494 6.494 5 C 0.245 3.755 6 N -0.451 5.451 7 C 0.106 3.894 8 C 0.103 3.897 9 N -1.027 6.027 10 S 2.692 3.308 11 O -1.004 7.004 12 O -1.004 7.004 13 C -1.036 5.036 14 H 0.104 0.896 15 C 0.109 3.891 16 N -0.849 5.849 17 Si 0.837 3.163 18 H -0.237 1.237 19 H -0.227 1.227 20 H -0.229 1.229 21 C 0.141 3.859 22 N -0.458 5.458 23 H 0.139 0.861 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.203 0.797 27 H 0.445 0.555 28 H 0.293 0.707 29 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.869 -0.214 -10.326 12.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.254 6.254 3 C 0.387 3.613 4 O -0.380 6.380 5 C -0.023 4.023 6 N -0.167 5.167 7 C -0.064 4.064 8 C -0.001 4.001 9 N -0.778 5.778 10 S 2.793 3.207 11 O -0.993 6.993 12 O -0.994 6.994 13 C -1.168 5.168 14 H 0.123 0.877 15 C -0.109 4.109 16 N -0.479 5.479 17 Si 0.654 3.346 18 H -0.160 1.160 19 H -0.150 1.150 20 H -0.151 1.151 21 C -0.031 4.031 22 N -0.174 5.174 23 H 0.157 0.843 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.220 0.780 27 H 0.286 0.714 28 H 0.103 0.897 29 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.548 -0.756 -10.279 13.390 hybrid contribution 1.159 0.448 0.682 1.418 sum -7.389 -0.308 -9.597 12.116 Atomic orbital electron populations 1.23785 0.73079 1.06498 1.03290 1.86659 1.25890 1.29894 1.82908 1.19754 0.85938 0.82369 0.73261 1.90839 1.65513 1.36696 1.44909 1.21484 0.93481 0.85607 1.01692 1.68384 1.07838 1.30793 1.09695 1.24455 0.89796 0.99324 0.92850 1.19550 0.85509 0.96581 0.98446 1.52835 1.10816 1.60647 1.53535 1.01061 0.72014 0.72823 0.74791 1.93424 1.81521 1.37083 1.87302 1.93433 1.34852 1.83555 1.87544 1.30738 1.32458 1.40155 1.13493 0.87734 1.25172 0.96391 0.94921 0.94370 1.70010 1.38901 1.39455 0.99539 0.87309 0.82070 0.81605 0.83644 1.16038 1.14988 1.15121 1.24088 0.86961 1.00051 0.91980 1.68067 1.12491 1.26408 1.10443 0.84321 0.91346 0.90817 0.78021 0.71445 0.89656 0.75793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 15 2 O -0.34 -9.21 10.36 -56.01 -0.58 -9.79 15 3 C 0.55 17.47 7.98 70.44 0.56 18.03 15 4 O -0.49 -16.92 16.65 20.06 0.33 -16.59 15 5 C 0.24 8.33 7.58 137.46 1.04 9.37 15 6 N -0.45 -15.67 10.14 -188.75 -1.91 -17.58 15 7 C 0.11 3.62 10.50 85.04 0.89 4.51 15 8 C 0.10 3.19 6.18 38.70 0.24 3.43 15 9 N -1.03 -30.98 5.77 -50.78 -0.29 -31.28 15 10 S 2.69 114.39 4.11 -56.49 -0.23 114.15 15 11 O -1.00 -45.03 13.78 -128.00 -1.76 -46.80 15 12 O -1.00 -45.47 16.37 -128.00 -2.09 -47.57 15 13 C -1.04 -53.09 10.15 67.73 0.69 -52.40 15 14 H 0.10 5.58 8.06 -2.91 -0.02 5.55 15 15 C 0.11 5.86 5.47 84.65 0.46 6.32 15 16 N -0.85 -46.94 13.96 21.44 0.30 -46.64 15 17 Si 0.84 38.39 26.32 68.60 1.81 40.19 15 18 H -0.24 -10.56 7.11 99.48 0.71 -9.86 15 19 H -0.23 -9.37 7.11 99.48 0.71 -8.66 15 20 H -0.23 -10.41 5.89 99.48 0.59 -9.82 15 21 C 0.14 3.85 11.26 85.04 0.96 4.81 15 22 N -0.46 -14.79 10.11 -188.76 -1.91 -16.69 15 23 H 0.14 1.41 8.14 -2.39 -0.02 1.39 15 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 15 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 15 26 H 0.20 7.06 5.82 -2.91 -0.02 7.04 15 27 H 0.44 9.52 8.95 -96.74 -0.87 8.65 15 28 H 0.29 14.58 8.31 -92.71 -0.77 13.81 15 29 H 0.23 4.11 8.06 -2.91 -0.02 4.09 15 Total: -1.00 -68.37 280.97 -0.06 -68.44 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.24 Total: 14.43 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 6.04 Total: -4.28 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -3.82 Total: -112.19 kcal Atomic # 8 Polarization: -116.64 SS G_CDS: -4.11 Total: -120.74 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 1.81 Total: 40.19 kcal Atomic # 16 Polarization: 114.39 SS G_CDS: -0.23 Total: 114.15 kcal Total: -68.37 -0.06 -68.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939688.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.359 kcal (2) G-P(sol) polarization free energy of solvation -68.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds