Wall clock time and date at job start Tue Mar 31 2020 03:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00448 * 2 1 4 4 H 1.48501 * 109.47681 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46987 * 299.99813 * 3 2 1 6 6 H 1.48498 * 109.47488 * 59.99497 * 3 2 1 7 7 C 1.37877 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99840 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00307 * 0.02562 * 7 2 1 10 10 O 1.42095 * 106.40175 * 66.45702 * 9 7 2 11 11 O 1.42107 * 106.40037 * 293.53821 * 9 7 2 12 12 N 1.65600 * 107.22062 * 179.97438 * 9 7 2 13 13 C 1.46918 * 120.63283 * 269.97363 * 12 9 7 14 14 C 1.53194 * 108.78089 * 233.63407 * 13 12 9 15 15 C 1.53043 * 109.30776 * 305.36420 * 14 13 12 16 16 H 1.09004 * 109.46377 * 301.34200 * 15 14 13 17 17 C 1.52999 * 109.45775 * 181.38734 * 15 14 13 18 18 F 1.39901 * 109.47259 * 179.97438 * 17 15 14 19 19 C 1.53037 * 109.53875 * 61.36647 * 15 14 13 20 20 F 1.39900 * 109.49775 * 178.68304 * 19 15 14 21 21 F 1.39896 * 109.52808 * 58.59910 * 19 15 14 22 22 C 1.46929 * 120.62795 * 90.00125 * 12 9 7 23 23 H 0.97000 * 120.00010 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.58859 * 113.83837 * 13 12 9 25 25 H 1.09000 * 109.70348 * 353.49233 * 13 12 9 26 26 H 1.09003 * 109.49900 * 185.41596 * 14 13 12 27 27 H 1.08996 * 109.52526 * 65.32701 * 14 13 12 28 28 H 1.09000 * 109.46777 * 299.92837 * 17 15 14 29 29 H 1.08997 * 109.47653 * 59.93242 * 17 15 14 30 30 H 1.08998 * 109.59209 * 6.57885 * 22 12 9 31 31 H 1.09003 * 109.58217 * 246.15166 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2494 11 8 0.4509 -2.7950 1.2501 12 7 2.2482 -3.9354 0.0005 13 6 2.7562 -4.4853 -1.2636 14 6 2.5722 -6.0061 -1.2493 15 6 3.2391 -6.5847 0.0008 16 1 4.2978 -6.3255 0.0007 17 6 3.0874 -8.1071 0.0010 18 9 3.6974 -8.6364 1.1434 19 6 2.5726 -6.0057 1.2509 20 9 3.1627 -6.5578 2.3929 21 9 1.2074 -6.3108 1.2368 22 6 2.7565 -4.4849 1.2649 23 1 -0.4850 0.8400 -0.0004 24 1 3.8147 -4.2461 -1.3670 25 1 2.2019 -4.0581 -2.0993 26 1 3.0318 -6.4366 -2.1390 27 1 1.5087 -6.2443 -1.2375 28 1 2.0287 -8.3667 0.0019 29 1 3.5620 -8.5197 -0.8892 30 1 2.2005 -4.0572 2.0991 31 1 3.8150 -4.2458 1.3677 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951888.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:54 Heat of formation + Delta-G solvation = -247.261692 kcal Electronic energy + Delta-G solvation = -22392.525707 eV Core-core repulsion = 18385.191654 eV Total energy + Delta-G solvation = -4007.334053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.059 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.85674 -47.53679 -46.71600 -37.82340 -35.42231 -34.07279 -33.37543 -33.04829 -30.24685 -27.12344 -26.18359 -23.44837 -22.72300 -20.50333 -18.95412 -17.87361 -16.92367 -16.84429 -16.68400 -16.22106 -15.93383 -15.34581 -15.09190 -14.95007 -14.54581 -14.12068 -13.69078 -13.57823 -13.20210 -13.05389 -12.77179 -12.52686 -12.49963 -12.09216 -11.94478 -11.37152 -11.28706 -11.27795 -11.13420 -10.92902 -10.72878 -10.63676 -10.39364 -10.18673 -10.11054 -9.32631 -9.05480 -8.47217 -6.77309 -5.40772 2.05565 3.01128 3.09526 3.16198 3.71919 3.93790 4.03239 4.20111 4.21651 4.40782 4.56879 4.70641 4.85005 4.91334 5.16332 5.23976 5.40213 5.46639 5.51604 5.59908 5.77154 5.82708 5.84365 5.94396 6.18861 6.23995 6.49499 7.24797 7.31270 7.89023 8.81386 10.16622 Molecular weight = 287.06amu Principal moments of inertia in cm(-1) A = 0.034940 B = 0.005502 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.184512 B = 5088.028249 C = 5135.209544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.132 3.868 3 Si 0.922 3.078 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.270 1.270 7 C -1.020 5.020 8 H 0.104 0.896 9 S 2.711 3.289 10 O -0.997 6.997 11 O -0.996 6.996 12 N -1.007 6.007 13 C 0.118 3.882 14 C -0.128 4.128 15 C -0.158 4.158 16 H 0.112 0.888 17 C 0.063 3.937 18 F -0.210 7.210 19 C 0.279 3.721 20 F -0.192 7.192 21 F -0.191 7.191 22 C 0.091 3.909 23 H 0.292 0.708 24 H 0.067 0.933 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.489 -10.872 -2.232 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.086 4.086 3 Si 0.746 3.254 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.195 1.195 7 C -1.153 5.153 8 H 0.122 0.878 9 S 2.813 3.187 10 O -0.988 6.988 11 O -0.987 6.987 12 N -0.840 5.840 13 C -0.008 4.008 14 C -0.167 4.167 15 C -0.177 4.177 16 H 0.130 0.870 17 C 0.008 3.992 18 F -0.191 7.191 19 C 0.241 3.759 20 F -0.173 7.173 21 F -0.172 7.172 22 C -0.037 4.037 23 H 0.102 0.898 24 H 0.085 0.915 25 H 0.124 0.876 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.136 0.864 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.356 -10.970 -2.186 13.388 hybrid contribution 0.963 1.054 0.212 1.443 sum 8.320 -9.916 -1.974 13.094 Atomic orbital electron populations 1.69899 1.06804 1.30808 1.39847 1.24774 0.94499 1.00906 0.88457 0.86102 0.80393 0.80243 0.78654 1.18588 1.19542 1.19527 1.30589 1.06169 1.11502 1.67060 0.87793 1.00748 0.72036 0.72941 0.73008 1.93353 1.72337 1.87423 1.45644 1.93369 1.72356 1.87331 1.45622 1.58328 1.62642 1.54461 1.08586 1.21350 1.00251 0.92081 0.87083 1.21929 1.02294 0.96956 0.95518 1.22798 1.03232 0.96060 0.95648 0.87005 1.22036 0.99293 0.91897 0.85982 1.92811 1.85332 1.87563 1.53365 1.21412 0.75685 0.95152 0.83638 1.93027 1.83744 1.87284 1.53228 1.93008 1.33136 1.94412 1.96688 1.22083 1.02662 0.89224 0.89703 0.89801 0.91459 0.87583 0.89281 0.89963 0.90004 0.89636 0.86356 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.36 13.19 55.43 0.73 -23.62 16 2 C 0.13 3.59 5.46 -17.82 -0.10 3.49 16 3 Si 0.92 20.03 29.54 -169.99 -5.02 15.01 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 7 C -1.02 -27.11 9.74 30.60 0.30 -26.81 16 8 H 0.10 2.51 7.81 -52.49 -0.41 2.10 16 9 S 2.71 69.75 5.01 -107.50 -0.54 69.21 16 10 O -1.00 -27.86 16.61 -57.17 -0.95 -28.81 16 11 O -1.00 -28.57 16.61 -57.17 -0.95 -29.52 16 12 N -1.01 -19.21 3.27 -113.52 -0.37 -19.59 16 13 C 0.12 1.75 6.47 -3.71 -0.02 1.73 16 14 C -0.13 -1.51 5.24 -26.61 -0.14 -1.65 16 15 C -0.16 -1.89 2.20 -90.58 -0.20 -2.09 16 16 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 17 C 0.06 0.67 6.85 37.16 0.25 0.92 16 18 F -0.21 -2.82 15.74 2.25 0.04 -2.79 16 19 C 0.28 4.40 1.67 -26.61 -0.04 4.35 16 20 F -0.19 -3.09 15.44 2.25 0.03 -3.05 16 21 F -0.19 -3.48 16.00 2.25 0.04 -3.44 16 22 C 0.09 1.55 5.96 -3.71 -0.02 1.52 16 23 H 0.29 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 25 H 0.11 1.69 6.92 -51.93 -0.36 1.33 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.08 7.74 -51.93 -0.40 0.68 16 28 H 0.08 0.86 7.84 -51.93 -0.41 0.45 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.12 2.20 6.92 -51.93 -0.36 1.84 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 282.57 15.07 4.26 4.26 Total: -1.00 -34.53 282.57 -5.89 -40.43 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -3.19 Total: 0.43 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 0.03 Total: -18.52 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.36 Total: -43.21 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: -1.90 Total: -58.32 kcal Atomic # 9 Polarization: -9.39 SS G_CDS: 0.11 Total: -9.28 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 69.75 SS G_CDS: -0.54 Total: 69.21 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.53 -5.89 -40.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951888.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.836 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds