Wall clock time and date at job start Tue Mar 31 2020 03:30:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.36003 * 117.00038 * 2 1
4 4 C 1.38722 * 119.97880 * 359.97438 * 3 2 1
5 5 C 1.38089 * 120.01756 * 180.02562 * 4 3 2
6 6 C 1.38888 * 119.97951 * 359.97438 * 5 4 3
7 7 N 1.39939 * 120.01829 * 179.97438 * 6 5 4
8 8 S 1.65604 * 120.00162 * 326.47789 * 7 6 5
9 9 O 1.42092 * 106.40170 * 181.26554 * 8 7 6
10 10 O 1.42102 * 106.39995 * 314.18589 * 8 7 6
11 11 C 1.76199 * 107.21604 * 67.72330 * 8 7 6
12 12 H 1.08003 * 120.00079 * 0.02562 * 11 8 7
13 13 C 1.37874 * 119.99838 * 179.97438 * 11 8 7
14 14 N 1.31513 * 120.00073 * 0.02562 * 13 11 8
15 15 Si 1.86804 * 120.00305 * 180.02562 * 13 11 8
16 16 H 1.48500 * 109.46818 * 359.97438 * 15 13 11
17 17 H 1.48494 * 109.47319 * 119.99768 * 15 13 11
18 18 H 1.48497 * 109.47323 * 240.00381 * 15 13 11
19 19 C 1.38839 * 119.96362 * 0.02562 * 6 5 4
20 20 C 1.50694 * 120.01040 * 179.97438 * 19 6 5
21 21 O 1.42904 * 109.46903 * 180.02562 * 20 19 6
22 22 C 1.38129 * 119.97735 * 0.25443 * 19 6 5
23 23 H 1.08995 * 109.47387 * 59.99845 * 1 2 3
24 24 H 1.08996 * 109.47039 * 180.02562 * 1 2 3
25 25 H 1.09005 * 109.46483 * 299.99991 * 1 2 3
26 26 H 1.07992 * 119.99192 * 0.02562 * 4 3 2
27 27 H 1.07998 * 120.00993 * 179.97438 * 5 4 3
28 28 H 0.97003 * 119.99933 * 146.47906 * 7 6 5
29 29 H 0.97004 * 120.00459 * 180.02562 * 14 13 11
30 30 H 1.08995 * 109.47532 * 60.00280 * 20 19 6
31 31 H 1.08999 * 109.47181 * 299.99867 * 20 19 6
32 32 H 0.96698 * 114.00010 * 299.99197 * 21 20 19
33 33 H 1.08007 * 119.99240 * 179.74453 * 22 19 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0465 1.2118 0.0000
4 6 1.2905 2.3749 -0.0005
5 6 1.9166 3.6057 -0.0011
6 6 3.3036 3.6789 -0.0005
7 7 3.9389 4.9257 -0.0016
8 16 3.2499 6.2055 -0.7954
9 8 4.1396 7.3020 -0.6368
10 8 2.8380 5.7159 -2.0642
11 6 1.7783 6.6286 0.0763
12 1 1.4928 6.0715 0.9564
13 6 0.9917 7.6717 -0.3645
14 7 1.3396 8.3504 -1.4359
15 14 -0.5681 8.1209 0.5599
16 1 -0.7345 7.2108 1.7215
17 1 -0.4733 9.5232 1.0388
18 1 -1.7370 7.9850 -0.3459
19 6 4.0594 2.5142 0.0000
20 6 5.5643 2.5923 0.0000
21 8 6.1098 1.2715 0.0000
22 6 3.4314 1.2839 -0.0053
23 1 -0.3634 0.5138 -0.8899
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3632 0.5139 0.8901
26 1 0.2121 2.3179 -0.0005
27 1 1.3280 4.5112 -0.0019
28 1 4.7829 5.0404 0.4626
29 1 0.7865 9.0845 -1.7459
30 1 5.9006 3.1246 0.8897
31 1 5.9005 3.1239 -0.8902
32 1 5.8518 0.7394 0.7651
33 1 4.0191 0.3778 -0.0091
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001192980570.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:30:59
Heat of formation + Delta-G solvation = -152.243022 kcal
Electronic energy + Delta-G solvation = -21042.056002 eV
Core-core repulsion = 17580.699008 eV
Total energy + Delta-G solvation = -3461.356994 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 287.071 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-40.09106 -38.18374 -36.46461 -35.36094 -34.15147 -33.86889 -33.21227 -31.15431
-28.91368 -26.81093 -26.30252 -25.85657 -22.24504 -21.05514 -19.07063 -18.20313
-17.65998 -17.29366 -16.74129 -16.39511 -15.74064 -15.55296 -15.01901 -14.65443
-14.38472 -14.15238 -13.94351 -13.37955 -13.11146 -12.78759 -12.52515 -12.20784
-12.14364 -11.64299 -11.40438 -11.33096 -11.21525 -10.84836 -10.68102 -10.48313
-10.42212 -10.36615 -10.28255 -9.79228 -9.37199 -8.91943 -8.59103 -7.36928
-6.84015 -5.48491 1.52231 1.73370 2.08535 2.97114 3.06196 3.12338
3.41102 3.92753 3.98052 4.41701 4.47338 4.51368 4.84859 5.05274
5.19852 5.23777 5.32503 5.40417 5.48303 5.53915 5.63619 5.65784
5.80931 6.11373 6.21763 6.44156 6.50690 6.68729 6.84009 6.95544
7.18329 7.52522 7.57192 7.74585 7.78996 8.72962 10.09835
Molecular weight = 287.07amu
Principal moments of inertia in cm(-1)
A = 0.016771 B = 0.006603 C = 0.005038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1669.151505 B = 4239.212931 C = 5556.173615
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.322 6.322
3 C 0.093 3.907
4 C -0.172 4.172
5 C -0.127 4.127
6 C 0.168 3.832
7 N -1.070 6.070
8 S 2.702 3.298
9 O -0.997 6.997
10 O -0.989 6.989
11 C -1.023 5.023
12 H 0.110 0.890
13 C 0.134 3.866
14 N -0.839 5.839
15 Si 0.921 3.079
16 H -0.260 1.260
17 H -0.270 1.270
18 H -0.270 1.270
19 C -0.132 4.132
20 C 0.123 3.877
21 O -0.563 6.563
22 C -0.123 4.123
23 H 0.055 0.945
24 H 0.095 0.905
25 H 0.053 0.947
26 H 0.130 0.870
27 H 0.166 0.834
28 H 0.410 0.590
29 H 0.293 0.707
30 H 0.061 0.939
31 H 0.105 0.895
32 H 0.376 0.624
33 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.351 -12.671 6.053 14.047
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.236 6.236
3 C 0.047 3.953
4 C -0.191 4.191
5 C -0.147 4.147
6 C 0.069 3.931
7 N -0.813 5.813
8 S 2.802 3.198
9 O -0.988 6.988
10 O -0.979 6.979
11 C -1.156 5.156
12 H 0.128 0.872
13 C -0.085 4.085
14 N -0.468 5.468
15 Si 0.744 3.256
16 H -0.184 1.184
17 H -0.195 1.195
18 H -0.195 1.195
19 C -0.137 4.137
20 C 0.046 3.954
21 O -0.368 6.368
22 C -0.142 4.142
23 H 0.074 0.926
24 H 0.113 0.887
25 H 0.072 0.928
26 H 0.148 0.852
27 H 0.183 0.817
28 H 0.243 0.757
29 H 0.103 0.897
30 H 0.079 0.921
31 H 0.123 0.877
32 H 0.223 0.777
33 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 0.229 -12.047 4.461 12.849
hybrid contribution -1.478 0.376 1.595 2.207
sum -1.249 -11.672 6.056 13.208
Atomic orbital electron populations
1.23000 0.78889 1.03367 1.01495 1.86023 1.20963 1.27067 1.89586
1.18832 0.92124 0.83985 1.00318 1.21057 0.99970 0.91525 1.06565
1.21764 0.93287 1.00263 0.99435 1.17066 0.91269 0.84634 1.00084
1.54257 1.34814 1.22670 1.69540 1.01040 0.75090 0.70102 0.73525
1.93395 1.68020 1.50333 1.87018 1.93413 1.83471 1.80105 1.40877
1.30590 1.29634 1.27646 1.27758 0.87171 1.24755 0.98426 0.92291
0.93026 1.69891 1.38406 1.18298 1.20249 0.86112 0.80214 0.79176
0.80050 1.18415 1.19456 1.19461 1.20182 0.96705 0.91945 1.04822
1.21054 0.87647 0.84236 1.02493 1.86541 1.74448 1.25852 1.49925
1.19834 0.91151 0.97419 1.05783 0.92623 0.88695 0.92802 0.85184
0.81730 0.75712 0.89660 0.92106 0.87718 0.77673 0.84796
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.28 9.81 101.05 0.99 1.27 16
2 O -0.32 -4.44 10.50 -19.75 -0.21 -4.64 16
3 C 0.09 1.44 6.69 -39.24 -0.26 1.17 16
4 C -0.17 -2.81 9.03 -39.46 -0.36 -3.17 16
5 C -0.13 -2.44 8.96 -39.40 -0.35 -2.79 16
6 C 0.17 3.15 6.17 -83.69 -0.52 2.63 16
7 N -1.07 -21.05 5.51 32.45 0.18 -20.87 16
8 S 2.70 69.44 4.64 -107.50 -0.50 68.94 16
9 O -1.00 -28.22 18.02 -57.17 -1.03 -29.25 16
10 O -0.99 -28.29 17.46 -57.17 -1.00 -29.29 16
11 C -1.02 -26.50 7.59 30.60 0.23 -26.27 16
12 H 0.11 2.58 6.86 -52.48 -0.36 2.22 16
13 C 0.13 3.55 5.46 -17.82 -0.10 3.46 16
14 N -0.84 -23.72 13.19 55.43 0.73 -22.98 16
15 Si 0.92 19.51 29.54 -169.99 -5.02 14.48 16
16 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16
17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16
18 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16
19 C -0.13 -2.10 5.89 -104.44 -0.62 -2.71 16
20 C 0.12 1.65 6.51 36.00 0.23 1.89 16
21 O -0.56 -6.92 12.68 -35.23 -0.45 -7.37 16
22 C -0.12 -1.83 9.15 -39.46 -0.36 -2.20 16
23 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16
24 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
25 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16
26 H 0.13 1.79 6.29 -52.49 -0.33 1.46 16
27 H 0.17 3.43 4.45 -52.49 -0.23 3.20 16
28 H 0.41 6.65 8.04 -34.47 -0.28 6.38 16
29 H 0.29 7.40 8.31 -40.82 -0.34 7.06 16
30 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16
31 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16
32 H 0.38 3.14 8.13 45.56 0.37 3.51 16
33 H 0.13 1.70 6.60 -52.48 -0.35 1.35 16
LS Contribution 296.27 15.07 4.46 4.46
Total: -1.00 -35.09 296.27 -6.29 -41.38
By element:
Atomic # 1 Polarization: 14.22 SS G_CDS: -2.36 Total: 11.86 kcal
Atomic # 6 Polarization: -25.62 SS G_CDS: -1.10 Total: -26.72 kcal
Atomic # 7 Polarization: -44.76 SS G_CDS: 0.91 Total: -43.85 kcal
Atomic # 8 Polarization: -67.88 SS G_CDS: -2.68 Total: -70.56 kcal
Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal
Atomic # 16 Polarization: 69.44 SS G_CDS: -0.50 Total: 68.94 kcal
Total LS contribution 4.46 Total: 4.46 kcal
Total: -35.09 -6.29 -41.38 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192980570.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -110.866 kcal
(2) G-P(sol) polarization free energy of solvation -35.085 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.951 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal
(6) G-S(sol) free energy of system = (1) + (5) -152.243 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds