Wall clock time and date at job start Tue Mar 31 2020 03:30:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.36003 * 117.00038 * 2 1
4 4 C 1.38722 * 119.97880 * 359.97438 * 3 2 1
5 5 C 1.38089 * 120.01756 * 180.02562 * 4 3 2
6 6 C 1.38888 * 119.97951 * 359.97438 * 5 4 3
7 7 N 1.39939 * 120.01829 * 179.97438 * 6 5 4
8 8 S 1.65604 * 120.00162 * 326.47789 * 7 6 5
9 9 O 1.42092 * 106.40170 * 181.26554 * 8 7 6
10 10 O 1.42102 * 106.39995 * 314.18589 * 8 7 6
11 11 C 1.76199 * 107.21604 * 67.72330 * 8 7 6
12 12 H 1.08003 * 120.00079 * 0.02562 * 11 8 7
13 13 C 1.37874 * 119.99838 * 179.97438 * 11 8 7
14 14 N 1.31513 * 120.00073 * 0.02562 * 13 11 8
15 15 Si 1.86804 * 120.00305 * 180.02562 * 13 11 8
16 16 H 1.48500 * 109.46818 * 359.97438 * 15 13 11
17 17 H 1.48494 * 109.47319 * 119.99768 * 15 13 11
18 18 H 1.48497 * 109.47323 * 240.00381 * 15 13 11
19 19 C 1.38839 * 119.96362 * 0.02562 * 6 5 4
20 20 C 1.50694 * 120.01040 * 179.97438 * 19 6 5
21 21 O 1.42904 * 109.46903 * 180.02562 * 20 19 6
22 22 C 1.38129 * 119.97735 * 0.25443 * 19 6 5
23 23 H 1.08995 * 109.47387 * 59.99845 * 1 2 3
24 24 H 1.08996 * 109.47039 * 180.02562 * 1 2 3
25 25 H 1.09005 * 109.46483 * 299.99991 * 1 2 3
26 26 H 1.07992 * 119.99192 * 0.02562 * 4 3 2
27 27 H 1.07998 * 120.00993 * 179.97438 * 5 4 3
28 28 H 0.97003 * 119.99933 * 146.47906 * 7 6 5
29 29 H 0.97004 * 120.00459 * 180.02562 * 14 13 11
30 30 H 1.08995 * 109.47532 * 60.00280 * 20 19 6
31 31 H 1.08999 * 109.47181 * 299.99867 * 20 19 6
32 32 H 0.96698 * 114.00010 * 299.99197 * 21 20 19
33 33 H 1.08007 * 119.99240 * 179.74453 * 22 19 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0465 1.2118 0.0000
4 6 1.2905 2.3749 -0.0005
5 6 1.9166 3.6057 -0.0011
6 6 3.3036 3.6789 -0.0005
7 7 3.9389 4.9257 -0.0016
8 16 3.2499 6.2055 -0.7954
9 8 4.1396 7.3020 -0.6368
10 8 2.8380 5.7159 -2.0642
11 6 1.7783 6.6286 0.0763
12 1 1.4928 6.0715 0.9564
13 6 0.9917 7.6717 -0.3645
14 7 1.3396 8.3504 -1.4359
15 14 -0.5681 8.1209 0.5599
16 1 -0.7345 7.2108 1.7215
17 1 -0.4733 9.5232 1.0388
18 1 -1.7370 7.9850 -0.3459
19 6 4.0594 2.5142 0.0000
20 6 5.5643 2.5923 0.0000
21 8 6.1098 1.2715 0.0000
22 6 3.4314 1.2839 -0.0053
23 1 -0.3634 0.5138 -0.8899
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3632 0.5139 0.8901
26 1 0.2121 2.3179 -0.0005
27 1 1.3280 4.5112 -0.0019
28 1 4.7829 5.0404 0.4626
29 1 0.7865 9.0845 -1.7459
30 1 5.9006 3.1246 0.8897
31 1 5.9005 3.1239 -0.8902
32 1 5.8518 0.7394 0.7651
33 1 4.0191 0.3778 -0.0091
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001192980570.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:30:59
Heat of formation + Delta-G solvation = -182.766042 kcal
Electronic energy + Delta-G solvation = -21043.379580 eV
Core-core repulsion = 17580.699008 eV
Total energy + Delta-G solvation = -3462.680572 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 287.071 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-41.30056 -39.31549 -37.69628 -37.33999 -36.27975 -35.43121 -35.06556 -32.38089
-30.09219 -28.47054 -27.69357 -26.97681 -23.61833 -22.27005 -20.95225 -19.75237
-19.11115 -18.66720 -18.29733 -17.74070 -17.20682 -16.76637 -16.54131 -16.05666
-15.81375 -15.65498 -15.43210 -14.89334 -14.30375 -14.16832 -14.06343 -13.74866
-13.23208 -13.12469 -13.02518 -12.74689 -12.64021 -12.61063 -12.53890 -12.34450
-12.29300 -11.67472 -11.43938 -11.28693 -11.13784 -10.83766 -9.83712 -8.84961
-8.66046 -7.54124 0.09154 0.26971 0.46925 1.32606 1.34308 1.51874
2.17192 2.39697 2.53338 2.68616 2.76454 3.49539 3.59323 3.68758
3.89713 4.11941 4.17364 4.33041 4.38098 4.45376 4.46314 4.53041
4.56704 4.78607 4.85816 5.11596 5.14922 5.23709 5.38242 5.48336
5.65625 5.84065 6.21550 6.48436 6.71927 6.80132 8.16477
Molecular weight = 287.07amu
Principal moments of inertia in cm(-1)
A = 0.016771 B = 0.006603 C = 0.005038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1669.151505 B = 4239.212931 C = 5556.173615
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 O -0.327 6.327
3 C 0.100 3.900
4 C -0.178 4.178
5 C -0.154 4.154
6 C 0.134 3.866
7 N -1.056 6.056
8 S 2.709 3.291
9 O -1.034 7.034
10 O -1.029 7.029
11 C -1.032 5.032
12 H 0.129 0.871
13 C 0.074 3.926
14 N -0.891 5.891
15 Si 0.990 3.010
16 H -0.244 1.244
17 H -0.261 1.261
18 H -0.259 1.259
19 C -0.123 4.123
20 C 0.125 3.875
21 O -0.568 6.568
22 C -0.123 4.123
23 H 0.056 0.944
24 H 0.125 0.875
25 H 0.064 0.936
26 H 0.151 0.849
27 H 0.143 0.857
28 H 0.424 0.576
29 H 0.301 0.699
30 H 0.085 0.915
31 H 0.095 0.905
32 H 0.394 0.606
33 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.280 -14.765 7.647 16.677
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 O -0.241 6.241
3 C 0.054 3.946
4 C -0.197 4.197
5 C -0.175 4.175
6 C 0.037 3.963
7 N -0.804 5.804
8 S 2.811 3.189
9 O -1.024 7.024
10 O -1.019 7.019
11 C -1.166 5.166
12 H 0.147 0.853
13 C -0.140 4.140
14 N -0.522 5.522
15 Si 0.808 3.192
16 H -0.166 1.166
17 H -0.185 1.185
18 H -0.183 1.183
19 C -0.128 4.128
20 C 0.047 3.953
21 O -0.376 6.376
22 C -0.141 4.141
23 H 0.075 0.925
24 H 0.143 0.857
25 H 0.082 0.918
26 H 0.169 0.831
27 H 0.160 0.840
28 H 0.261 0.739
29 H 0.111 0.889
30 H 0.103 0.897
31 H 0.113 0.887
32 H 0.245 0.755
33 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges -0.677 -14.175 6.064 15.433
hybrid contribution -1.181 0.808 1.112 1.812
sum -1.858 -13.367 7.176 15.285
Atomic orbital electron populations
1.23345 0.76803 1.05626 1.02057 1.86035 1.23104 1.25861 1.89073
1.18981 0.92529 0.84371 0.98727 1.21242 1.01232 0.90872 1.06333
1.21725 0.93659 1.00619 1.01479 1.17295 0.91554 0.84675 1.02769
1.53449 1.35337 1.22101 1.69514 1.00426 0.74990 0.70151 0.73297
1.93335 1.68903 1.52666 1.87540 1.93350 1.84082 1.80855 1.43565
1.30855 1.29678 1.27879 1.28196 0.85323 1.26000 1.02275 0.91963
0.93756 1.69985 1.40427 1.19464 1.22277 0.85095 0.75509 0.79454
0.79149 1.16642 1.18487 1.18282 1.20442 0.98014 0.91170 1.03126
1.21049 0.85911 0.85172 1.03208 1.86518 1.74207 1.25494 1.51339
1.20185 0.91402 0.97953 1.04603 0.92515 0.85713 0.91772 0.83120
0.83971 0.73938 0.88902 0.89678 0.88721 0.75537 0.82115
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.27 9.81 113.37 1.11 1.38 16
2 O -0.33 -8.02 10.50 -93.58 -0.98 -9.00 16
3 C 0.10 2.87 6.69 22.49 0.15 3.02 16
4 C -0.18 -5.61 9.03 22.35 0.20 -5.41 16
5 C -0.15 -5.93 8.96 22.39 0.20 -5.73 16
6 C 0.13 5.01 6.17 38.15 0.24 5.25 16
7 N -1.06 -42.12 5.51 -51.26 -0.28 -42.40 16
8 S 2.71 143.82 4.64 -56.49 -0.26 143.56 16
9 O -1.03 -60.65 18.02 -128.00 -2.31 -62.96 16
10 O -1.03 -61.32 17.46 -128.00 -2.23 -63.55 16
11 C -1.03 -54.34 7.59 67.73 0.51 -53.82 16
12 H 0.13 6.06 6.86 -2.91 -0.02 6.04 16
13 C 0.07 3.94 5.46 84.65 0.46 4.40 16
14 N -0.89 -51.65 13.19 21.45 0.28 -51.37 16
15 Si 0.99 39.43 29.54 68.60 2.03 41.45 16
16 H -0.24 -8.93 7.11 99.48 0.71 -8.22 16
17 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16
18 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16
19 C -0.12 -3.73 5.89 -19.75 -0.12 -3.84 16
20 C 0.12 3.10 6.51 71.23 0.46 3.56 16
21 O -0.57 -12.36 12.68 -148.98 -1.89 -14.25 16
22 C -0.12 -3.36 9.15 22.35 0.20 -3.16 16
23 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16
24 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16
25 H 0.06 0.97 7.66 -2.38 -0.02 0.95 16
26 H 0.15 3.92 6.29 -2.91 -0.02 3.90 16
27 H 0.14 6.07 4.45 -2.91 -0.01 6.06 16
28 H 0.42 13.84 8.04 -96.74 -0.78 13.06 16
29 H 0.30 15.59 8.31 -92.71 -0.77 14.82 16
30 H 0.09 1.71 7.87 -2.39 -0.02 1.69 16
31 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16
32 H 0.39 5.21 8.13 -74.06 -0.60 4.61 16
33 H 0.16 3.49 6.60 -2.91 -0.02 3.47 16
Total: -1.00 -77.49 296.27 -2.41 -79.91
By element:
Atomic # 1 Polarization: 33.16 SS G_CDS: -0.19 Total: 32.97 kcal
Atomic # 6 Polarization: -57.77 SS G_CDS: 3.43 Total: -54.34 kcal
Atomic # 7 Polarization: -93.78 SS G_CDS: 0.00 Total: -93.78 kcal
Atomic # 8 Polarization: -142.35 SS G_CDS: -7.41 Total: -149.76 kcal
Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.45 kcal
Atomic # 16 Polarization: 143.82 SS G_CDS: -0.26 Total: 143.56 kcal
Total: -77.49 -2.41 -79.91 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192980570.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -102.860 kcal
(2) G-P(sol) polarization free energy of solvation -77.493 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.353 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.413 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.906 kcal
(6) G-S(sol) free energy of system = (1) + (5) -182.766 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds