Wall clock time and date at job start Tue Mar 31 2020 03:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99765 * 2 1 4 4 H 1.48494 * 109.47505 * 269.99821 * 3 2 1 5 5 H 1.48495 * 109.46893 * 30.00295 * 3 2 1 6 6 H 1.48505 * 109.46828 * 149.99883 * 3 2 1 7 7 C 1.37877 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00404 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99706 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.40146 * 66.45646 * 9 7 2 11 11 O 1.42095 * 106.40229 * 293.53903 * 9 7 2 12 12 N 1.65602 * 107.21635 * 179.97438 * 9 7 2 13 13 C 1.46498 * 119.99612 * 65.28001 * 12 9 7 14 14 C 1.53001 * 109.47089 * 164.71987 * 13 12 9 15 15 H 1.09005 * 109.46627 * 60.00018 * 14 13 12 16 16 O 1.42899 * 109.47278 * 299.99952 * 14 13 12 17 17 C 1.50702 * 109.47071 * 179.97438 * 14 13 12 18 18 C 1.38285 * 119.96779 * 85.00483 * 17 14 13 19 19 C 1.38250 * 120.11020 * 179.97438 * 18 17 14 20 20 C 1.38166 * 120.05425 * 359.96093 * 19 18 17 21 21 C 1.38711 * 119.94403 * 0.02562 * 20 19 18 22 22 O 1.35905 * 120.05471 * 180.02562 * 21 20 19 23 23 C 1.38121 * 119.97236 * 264.72237 * 17 14 13 24 24 H 0.97001 * 120.00277 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99942 * 244.99525 * 12 9 7 26 26 H 1.08996 * 109.46882 * 284.72133 * 13 12 9 27 27 H 1.08999 * 109.47498 * 44.72066 * 13 12 9 28 28 H 0.96701 * 113.99981 * 299.99932 * 16 14 13 29 29 H 1.07999 * 119.94821 * 359.97129 * 18 17 14 30 30 H 1.07997 * 119.97041 * 179.97438 * 19 18 17 31 31 H 1.08004 * 120.02625 * 180.02562 * 20 19 18 32 32 H 0.96698 * 113.99971 * 90.00179 * 22 21 20 33 33 H 1.08000 * 120.03089 * 0.02562 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4519 -2.7955 -1.2494 11 8 0.4511 -2.7950 1.2500 12 7 2.2485 -3.9354 0.0005 13 6 3.1354 -4.1125 1.1530 14 6 3.7957 -5.4908 1.0813 15 1 4.3754 -5.5684 0.1614 16 8 2.7876 -6.5034 1.0960 17 6 4.7085 -5.6727 2.2665 18 6 4.1975 -6.1266 3.4687 19 6 5.0324 -6.2951 4.5577 20 6 6.3800 -6.0110 4.4471 21 6 6.8950 -5.5559 3.2422 22 8 8.2203 -5.2763 3.1307 23 6 6.0558 -5.3916 2.1495 24 1 -0.4850 0.8400 -0.0004 25 1 2.3173 -4.5325 -0.7608 26 1 3.9043 -3.3401 1.1418 27 1 2.5558 -4.0348 2.0729 28 1 2.2322 -6.4940 1.8876 29 1 3.1446 -6.3497 3.5570 30 1 4.6308 -6.6492 5.4956 31 1 7.0318 -6.1432 5.2980 32 1 8.7587 -6.0288 2.8499 33 1 6.4551 -5.0412 1.2092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192994066.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:08 Heat of formation + Delta-G solvation = -197.807413 kcal Electronic energy + Delta-G solvation = -20409.133257 eV Core-core repulsion = 16945.800443 eV Total energy + Delta-G solvation = -3463.332814 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.071 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.95837 -39.01596 -37.40585 -37.09844 -36.13950 -35.35858 -35.05996 -32.60136 -30.65004 -28.54527 -28.25919 -24.50335 -23.58457 -22.23651 -21.01154 -19.55139 -19.12292 -18.34403 -17.96341 -17.36225 -17.11835 -16.85700 -16.33358 -16.05687 -15.89308 -15.59264 -15.21280 -14.95446 -14.50715 -14.02646 -13.77148 -13.50387 -13.26871 -13.06921 -13.01709 -12.59300 -12.53704 -12.50284 -12.43545 -12.30908 -12.27239 -11.67560 -11.25326 -11.04005 -11.02518 -10.21449 -9.83641 -9.56042 -8.75841 -7.48841 0.20235 0.33329 0.41592 1.34136 1.34229 1.50296 2.20414 2.57577 2.63265 2.95067 3.23673 3.50809 3.63971 3.75344 3.88064 3.93528 4.18603 4.21842 4.34978 4.47895 4.58801 4.65332 4.78137 4.94989 5.01447 5.08844 5.29695 5.42594 5.45215 5.55544 5.87936 5.89077 6.37098 6.68786 6.78198 6.87668 8.20615 Molecular weight = 287.07amu Principal moments of inertia in cm(-1) A = 0.019449 B = 0.004651 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.296714 B = 6018.404560 C = 6866.762895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.989 3.011 4 H -0.255 1.255 5 H -0.263 1.263 6 H -0.248 1.248 7 C -1.042 5.042 8 H 0.120 0.880 9 S 2.724 3.276 10 O -1.045 7.045 11 O -1.042 7.042 12 N -1.115 6.115 13 C 0.093 3.907 14 C 0.154 3.846 15 H 0.126 0.874 16 O -0.559 6.559 17 C -0.106 4.106 18 C -0.130 4.130 19 C -0.101 4.101 20 C -0.151 4.151 21 C 0.097 3.903 22 O -0.510 6.510 23 C -0.146 4.146 24 H 0.299 0.701 25 H 0.417 0.583 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.386 0.614 29 H 0.139 0.861 30 H 0.153 0.847 31 H 0.146 0.854 32 H 0.410 0.590 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.377 -12.052 7.697 20.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.143 4.143 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.187 1.187 6 H -0.172 1.172 7 C -1.176 5.176 8 H 0.138 0.862 9 S 2.825 3.175 10 O -1.036 7.036 11 O -1.032 7.032 12 N -0.875 5.875 13 C -0.034 4.034 14 C 0.093 3.907 15 H 0.143 0.857 16 O -0.366 6.366 17 C -0.108 4.108 18 C -0.148 4.148 19 C -0.119 4.119 20 C -0.169 4.169 21 C 0.053 3.947 22 O -0.323 6.323 23 C -0.164 4.164 24 H 0.109 0.891 25 H 0.251 0.749 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.236 0.764 29 H 0.157 0.843 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.269 0.731 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.327 -11.607 7.468 19.894 hybrid contribution 0.500 0.641 -0.064 0.815 sum 14.828 -10.967 7.404 19.873 Atomic orbital electron populations 1.69988 1.08744 1.32337 1.41410 1.26005 0.95370 1.05368 0.87564 0.85143 0.79147 0.74927 0.80051 1.17892 1.18668 1.17159 1.30931 1.07217 1.12709 1.66704 0.86177 0.99767 0.72504 0.73828 0.71448 1.93313 1.74895 1.88405 1.46938 1.93295 1.74477 1.88250 1.47164 1.55216 1.55169 1.49517 1.27556 1.21984 0.93929 0.98997 0.88511 1.20946 0.87262 0.85192 0.97270 0.85678 1.86572 1.48034 1.54137 1.47893 1.20323 0.94307 1.00116 0.96023 1.21246 1.01229 0.99927 0.92421 1.21316 0.92807 0.98419 0.99311 1.21718 0.96812 1.00306 0.98057 1.18565 0.84471 0.98548 0.93110 1.84791 1.15336 1.41459 1.90757 1.21423 0.93216 1.01993 0.99788 0.89094 0.74916 0.90508 0.91146 0.76385 0.84347 0.82968 0.83666 0.73107 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.46 13.19 21.45 0.28 -53.18 16 2 C 0.07 3.89 5.46 84.65 0.46 4.35 16 3 Si 0.99 41.35 29.54 68.60 2.03 43.37 16 4 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 5 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 7 C -1.04 -57.16 9.72 67.73 0.66 -56.50 16 8 H 0.12 5.90 7.81 -2.91 -0.02 5.88 16 9 S 2.72 145.73 5.02 -56.49 -0.28 145.44 16 10 O -1.05 -62.92 18.02 -128.00 -2.31 -65.23 16 11 O -1.04 -61.55 17.48 -128.00 -2.24 -63.79 16 12 N -1.11 -43.16 5.86 -187.50 -1.10 -44.26 16 13 C 0.09 2.97 5.87 86.38 0.51 3.48 16 14 C 0.15 3.78 3.30 29.85 0.10 3.88 16 15 H 0.13 2.75 8.05 -2.38 -0.02 2.73 16 16 O -0.56 -14.08 13.00 -148.98 -1.94 -16.02 16 17 C -0.11 -2.36 5.00 -19.88 -0.10 -2.46 16 18 C -0.13 -2.57 9.33 22.28 0.21 -2.36 16 19 C -0.10 -1.71 10.04 22.26 0.22 -1.48 16 20 C -0.15 -2.62 9.99 22.37 0.22 -2.40 16 21 C 0.10 1.92 6.71 22.51 0.15 2.07 16 22 O -0.51 -8.76 13.50 -92.49 -1.25 -10.01 16 23 C -0.15 -3.07 9.62 22.37 0.22 -2.86 16 24 H 0.30 16.05 8.31 -92.71 -0.77 15.27 16 25 H 0.42 14.23 8.65 -96.74 -0.84 13.39 16 26 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.07 2.39 7.74 -2.39 -0.02 2.37 16 28 H 0.39 7.86 7.39 -74.06 -0.55 7.31 16 29 H 0.14 2.29 6.61 -2.91 -0.02 2.27 16 30 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 31 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.41 2.80 9.06 -74.06 -0.67 2.12 16 33 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -81.01 307.91 -5.03 -86.04 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.88 Total: 31.91 kcal Atomic # 6 Polarization: -56.92 SS G_CDS: 2.65 Total: -54.27 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -0.82 Total: -97.44 kcal Atomic # 8 Polarization: -147.31 SS G_CDS: -7.73 Total: -155.04 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: 145.73 SS G_CDS: -0.28 Total: 145.44 kcal Total: -81.01 -5.03 -86.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994066.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.772 kcal (2) G-P(sol) polarization free energy of solvation -81.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds