Wall clock time and date at job start Tue Mar 31 2020 02:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00269 * 2 1 4 4 C 1.52999 * 109.47448 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46992 * 58.89021 * 4 3 2 6 6 O 1.42897 * 109.46874 * 298.89706 * 4 3 2 7 7 C 1.42901 * 114.00240 * 149.99938 * 6 4 3 8 8 C 1.50700 * 109.47397 * 178.89264 * 4 3 2 9 9 O 1.21275 * 119.99794 * 97.93208 * 8 4 3 10 10 N 1.34773 * 119.99650 * 277.93538 * 8 4 3 11 11 C 1.48215 * 119.97187 * 0.79865 * 10 8 4 12 12 C 1.47136 * 110.20007 * 102.58694 * 11 10 8 13 13 C 1.53396 * 112.04801 * 58.39552 * 12 11 10 14 14 N 1.43467 * 107.85599 * 281.54020 * 13 12 11 15 15 C 1.36934 * 118.93640 * 273.58433 * 14 13 12 16 16 H 1.07997 * 119.99738 * 140.25149 * 15 14 13 17 17 C 1.38814 * 120.00484 * 320.24796 * 15 14 13 18 18 N 1.31615 * 120.00258 * 154.79639 * 17 15 14 19 19 Si 1.86802 * 119.99574 * 334.79985 * 17 15 14 20 20 H 1.48498 * 109.47019 * 95.23387 * 19 17 15 21 21 H 1.48497 * 109.47038 * 215.23164 * 19 17 15 22 22 H 1.48497 * 109.47381 * 335.23279 * 19 17 15 23 23 C 1.48859 * 122.12148 * 93.60866 * 14 13 12 24 24 C 1.43626 * 119.96681 * 180.78374 * 10 8 4 25 25 H 1.08996 * 109.47391 * 300.00482 * 1 2 3 26 26 H 1.09006 * 109.46687 * 60.00403 * 1 2 3 27 27 H 1.09000 * 109.46871 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47422 * 59.99319 * 3 2 1 29 29 H 1.09001 * 109.46871 * 299.99958 * 3 2 1 30 30 H 1.09000 * 109.47114 * 59.99428 * 7 6 4 31 31 H 1.09001 * 109.46984 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47069 * 299.99651 * 7 6 4 33 33 H 1.09008 * 109.32385 * 222.76997 * 11 10 8 34 34 H 1.09005 * 109.32466 * 342.40400 * 11 10 8 35 35 H 1.09007 * 109.00550 * 178.81143 * 12 11 10 36 36 H 1.08996 * 109.00964 * 297.59956 * 12 11 10 37 37 H 1.08997 * 109.83550 * 161.94060 * 13 12 11 38 38 H 1.09000 * 109.83508 * 41.13301 * 13 12 11 39 39 H 0.96998 * 119.99744 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.47896 * 200.63871 * 23 14 13 41 41 H 1.09000 * 109.48972 * 80.60709 * 23 14 13 42 42 H 1.08997 * 108.87352 * 31.43454 * 24 10 8 43 43 H 1.09000 * 108.87441 * 149.87824 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8561 0.6264 -0.8790 6 8 3.9584 0.4982 1.1805 7 6 5.1625 -0.2535 1.0156 8 6 4.1485 2.5610 -0.0268 9 8 4.5287 3.0761 1.0032 10 7 4.2741 3.2195 -1.1960 11 6 3.7930 2.5967 -2.4519 12 6 2.5055 3.1867 -2.8510 13 6 2.6051 4.7043 -3.0511 14 7 2.5869 5.3210 -1.7558 15 6 1.3803 5.6098 -1.1764 16 1 1.2387 5.4530 -0.1173 17 6 0.3392 6.1041 -1.9501 18 7 -0.9074 5.9244 -1.5683 19 14 0.7078 7.0243 -3.5335 20 1 0.6364 6.0840 -4.6806 21 1 -0.2897 8.1086 -3.7194 22 1 2.0695 7.6120 -3.4591 23 6 3.8375 5.6574 -1.0218 24 6 4.8738 4.5243 -1.2237 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 5.9721 0.4163 0.7255 31 1 5.4163 -0.7439 1.9554 32 1 5.0179 -1.0058 0.2403 33 1 4.5263 2.7632 -3.2411 34 1 3.6663 1.5250 -2.2977 35 1 2.1806 2.7306 -3.7861 36 1 1.7647 2.9775 -2.0793 37 1 1.7573 5.0563 -3.6388 38 1 3.5355 4.9496 -3.5631 39 1 -1.6348 6.2702 -2.1089 40 1 3.6179 5.7641 0.0405 41 1 4.2434 6.5937 -1.4050 42 1 5.6216 4.5855 -0.4332 43 1 5.3674 4.6651 -2.1853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197082908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:17 Heat of formation + Delta-G solvation = -77.070773 kcal Electronic energy + Delta-G solvation = -25253.549836 eV Core-core repulsion = 21722.084535 eV Total energy + Delta-G solvation = -3531.465301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.33410 -38.10714 -37.31802 -36.59686 -34.56617 -32.48750 -31.71673 -30.67648 -27.99576 -26.64855 -26.04063 -25.72695 -24.07627 -22.94299 -22.10990 -20.03429 -18.69275 -17.61702 -17.05642 -16.66321 -16.10894 -15.83850 -15.50056 -15.26126 -15.11721 -14.71687 -14.40925 -14.02504 -13.81363 -13.44864 -13.26898 -13.11028 -12.75504 -12.41754 -12.18058 -12.12017 -11.75301 -11.64617 -11.33133 -11.27300 -10.95615 -10.81756 -10.58167 -10.49547 -10.35451 -10.26885 -9.88780 -9.65438 -9.44007 -9.03300 -8.53801 -8.27729 -6.79611 -6.05422 -3.44817 2.73031 3.18862 3.25621 3.43051 3.48388 3.83021 3.94371 4.48123 4.66003 4.84121 4.98688 5.10164 5.16210 5.25843 5.33268 5.39537 5.45239 5.53244 5.54629 5.60605 5.65032 5.68482 5.70948 5.82087 5.83428 5.88108 6.02104 6.07241 6.21465 6.23529 6.51948 6.66162 6.70071 6.86071 7.02937 7.11925 7.25277 7.65304 8.06023 8.36176 8.48510 9.01905 9.68765 10.07818 11.10324 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.006642 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.354086 B = 4214.475104 C = 5034.265254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.066 3.934 4 C 0.081 3.919 5 H 0.086 0.914 6 O -0.351 6.351 7 C 0.031 3.969 8 C 0.498 3.502 9 O -0.524 6.524 10 N -0.584 5.584 11 C 0.116 3.884 12 C -0.174 4.174 13 C 0.153 3.847 14 N -0.602 5.602 15 C -0.270 4.270 16 H 0.074 0.926 17 C 0.040 3.960 18 N -0.895 5.895 19 Si 0.873 3.127 20 H -0.286 1.286 21 H -0.301 1.301 22 H -0.271 1.271 23 C 0.127 3.873 24 C 0.101 3.899 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.036 0.964 39 H 0.263 0.737 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.434 -11.494 -2.910 15.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C -0.011 4.011 4 C 0.020 3.980 5 H 0.104 0.896 6 O -0.268 6.268 7 C -0.066 4.066 8 C 0.284 3.716 9 O -0.400 6.400 10 N -0.317 5.317 11 C -0.006 4.006 12 C -0.215 4.215 13 C 0.026 3.974 14 N -0.325 5.325 15 C -0.399 4.399 16 H 0.092 0.908 17 C -0.161 4.161 18 N -0.535 5.535 19 Si 0.703 3.297 20 H -0.214 1.214 21 H -0.229 1.229 22 H -0.196 1.196 23 C 0.002 3.998 24 C -0.024 4.024 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.503 -11.338 -2.182 14.953 hybrid contribution -0.088 0.866 -1.304 1.568 sum 9.415 -10.472 -3.487 14.507 Atomic orbital electron populations 1.22748 0.80507 1.02317 1.00841 1.87795 1.20043 1.27161 1.95654 1.22641 0.89581 0.85469 1.03407 1.22055 0.94775 0.91171 0.90019 0.89596 1.88050 1.41680 1.64338 1.32721 1.22822 0.86776 0.94613 1.02395 1.20860 0.79542 0.87641 0.83564 1.90677 1.48837 1.68384 1.32092 1.47477 1.59878 1.17327 1.07059 1.20924 0.97171 0.96836 0.85667 1.21852 0.97309 1.00631 1.01683 1.20560 0.98762 0.89901 0.88141 1.43916 1.02158 1.68982 1.17468 1.18756 0.86840 1.38821 0.95464 0.90847 1.25505 0.95074 0.97729 0.97803 1.69907 0.98323 1.45406 1.39905 0.87008 0.78044 0.80493 0.84200 1.21429 1.22884 1.19588 1.22141 0.86747 0.93407 0.97527 1.21629 0.96115 0.83083 1.01568 0.93745 0.93569 0.89805 0.91560 0.89706 0.94264 0.89365 0.93915 0.91171 0.90831 0.92034 0.90000 0.92873 0.94531 0.92743 0.91879 0.94981 0.90591 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.39 -6.14 10.61 -43.90 -0.47 -6.60 16 3 C 0.07 1.11 5.54 37.16 0.21 1.32 16 4 C 0.08 1.30 1.99 -27.88 -0.06 1.25 16 5 H 0.09 1.14 5.90 -51.93 -0.31 0.83 16 6 O -0.35 -5.88 9.89 -60.38 -0.60 -6.47 16 7 C 0.03 0.37 10.81 101.05 1.09 1.47 16 8 C 0.50 9.03 6.86 -10.99 -0.08 8.95 16 9 O -0.52 -11.37 16.19 -13.31 -0.22 -11.59 16 10 N -0.58 -9.57 2.45 -176.65 -0.43 -10.00 16 11 C 0.12 1.59 5.21 -5.91 -0.03 1.56 16 12 C -0.17 -2.90 5.48 -29.34 -0.16 -3.06 16 13 C 0.15 3.05 4.59 -5.44 -0.02 3.03 16 14 N -0.60 -13.60 2.07 -172.25 -0.36 -13.96 16 15 C -0.27 -7.32 9.49 -15.06 -0.14 -7.46 16 16 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 17 C 0.04 1.11 5.22 -17.43 -0.09 1.02 16 18 N -0.89 -26.43 13.97 55.49 0.78 -25.66 16 19 Si 0.87 21.44 25.36 -169.99 -4.31 17.13 16 20 H -0.29 -6.75 6.67 56.52 0.38 -6.38 16 21 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.13 2.53 6.85 -1.75 -0.01 2.52 16 24 C 0.10 1.65 5.25 -4.57 -0.02 1.63 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.09 1.46 4.84 -51.93 -0.25 1.21 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.07 0.80 8.06 -51.92 -0.42 0.38 16 34 H 0.07 0.86 5.52 -51.93 -0.29 0.57 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.60 5.24 -51.93 -0.27 1.33 16 37 H 0.05 1.19 3.50 -51.93 -0.18 1.00 16 38 H 0.04 0.64 7.59 -51.93 -0.39 0.25 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.06 1.38 7.97 -51.93 -0.41 0.97 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.24 7.38 -51.93 -0.38 0.85 16 43 H 0.06 0.90 7.73 -51.93 -0.40 0.50 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -33.06 333.04 -5.48 -38.54 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.69 Total: -0.16 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 1.79 Total: 13.75 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.01 Total: -49.62 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -1.28 Total: -24.66 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.31 Total: 17.13 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.06 -5.48 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197082908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.526 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds