Wall clock time and date at job start Tue Mar 31 2020 02:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47539 * 2 1 4 4 C 1.42892 * 114.00310 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46934 * 179.97438 * 4 3 2 6 6 O 1.21274 * 119.99994 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99573 * 180.02562 * 5 4 3 8 8 C 1.47502 * 118.76205 * 359.97438 * 7 5 4 9 9 C 1.53575 * 111.02725 * 138.34792 * 8 7 5 10 10 C 1.51532 * 109.57901 * 320.02191 * 9 8 7 11 11 O 1.42155 * 108.75773 * 91.40132 * 10 9 8 12 12 C 1.38015 * 119.43670 * 272.77231 * 11 10 9 13 13 H 1.08998 * 109.47599 * 303.42257 * 12 11 10 14 14 C 1.53007 * 109.46708 * 183.42826 * 12 11 10 15 15 N 1.46499 * 109.46767 * 65.00551 * 14 12 11 16 16 C 1.36939 * 119.99642 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99986 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99813 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00193 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00027 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47070 * 59.99614 * 20 18 16 22 22 H 1.48502 * 109.47535 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47008 * 299.99913 * 20 18 16 24 24 C 1.45121 * 118.75210 * 179.97438 * 7 5 4 25 25 H 1.09006 * 109.47300 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46965 * 299.99681 * 1 2 3 27 27 H 1.08995 * 109.47295 * 59.99744 * 1 2 3 28 28 H 1.09000 * 109.47298 * 240.00016 * 2 1 3 29 29 H 1.09004 * 109.47354 * 120.00055 * 2 1 3 30 30 H 1.09003 * 109.46890 * 60.00338 * 4 3 2 31 31 H 1.08994 * 109.47563 * 300.00199 * 4 3 2 32 32 H 1.09004 * 109.16572 * 17.95206 * 8 7 5 33 33 H 1.08993 * 109.16924 * 258.74982 * 8 7 5 34 34 H 1.09003 * 109.45246 * 199.98725 * 9 8 7 35 35 H 1.09000 * 109.45053 * 80.05588 * 9 8 7 36 36 H 1.08997 * 109.59067 * 331.61691 * 10 9 8 37 37 H 1.08996 * 109.58948 * 211.17839 * 10 9 8 38 38 H 1.09004 * 109.46896 * 185.00312 * 14 12 11 39 39 H 1.08996 * 109.47292 * 305.00551 * 14 12 11 40 40 H 0.96992 * 120.00403 * 359.97438 * 15 14 12 41 41 H 0.97001 * 120.00030 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.46596 * 29.33206 * 24 7 5 43 43 H 1.09007 * 109.46152 * 149.30652 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4600 -0.0006 5 6 3.8194 2.9162 -0.0012 6 8 2.9610 3.7728 -0.0006 7 7 5.1210 3.2662 -0.0023 8 6 6.1422 2.2019 -0.0024 9 6 7.2959 2.5453 -0.9561 10 6 6.7414 3.1761 -2.2174 11 8 6.7081 4.5869 -2.0463 12 6 5.6033 5.1736 -1.4632 13 1 4.7094 4.9039 -2.0255 14 6 5.7704 6.6945 -1.4699 15 7 5.7817 7.1784 -2.8526 16 6 5.9205 8.5164 -3.1085 17 1 6.0214 9.2150 -2.2911 18 6 5.9307 8.9750 -4.4187 19 7 5.8073 8.1238 -5.4149 20 14 6.1208 10.8002 -4.7679 21 1 7.4111 11.2791 -4.2102 22 1 6.1013 11.0282 -6.2352 23 1 5.0018 11.5443 -4.1360 24 6 5.4646 4.6762 -0.0034 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8332 0.9767 -0.8909 31 1 3.8340 0.9764 0.8891 32 1 5.6829 1.2653 -0.3188 33 1 6.5356 2.0833 1.0072 34 1 7.8374 1.6349 -1.2133 35 1 7.9742 3.2452 -0.4681 36 1 5.7323 2.8059 -2.3980 37 1 7.3817 2.9256 -3.0632 38 1 4.9415 7.1534 -0.9310 39 1 6.7100 6.9589 -0.9847 40 1 5.6907 6.5511 -3.5867 41 1 5.8147 8.4442 -6.3305 42 1 4.6805 5.2415 0.5003 43 1 6.4096 4.8200 0.5205 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199753697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:02 Heat of formation + Delta-G solvation = -102.275364 kcal Electronic energy + Delta-G solvation = -23597.842708 eV Core-core repulsion = 20065.284454 eV Total energy + Delta-G solvation = -3532.558254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.62916 -38.77691 -37.65853 -35.66405 -34.56076 -32.87119 -31.84081 -30.88854 -29.52689 -27.63963 -26.43910 -24.79072 -23.10352 -22.61523 -21.72661 -20.92944 -19.27436 -17.64231 -17.20784 -17.02484 -16.73596 -16.41073 -16.00862 -15.60957 -15.02698 -14.74231 -14.32194 -14.05295 -13.80915 -13.36224 -13.22895 -13.02400 -12.88017 -12.73452 -12.54691 -12.28588 -12.01690 -11.72469 -11.68382 -11.50502 -11.34594 -10.95964 -10.77889 -10.72327 -10.25366 -10.02374 -9.99948 -9.74447 -9.61382 -9.39732 -8.78243 -8.56710 -6.80370 -5.65051 -2.93180 2.47735 2.55868 3.51880 3.53111 3.55309 3.56931 3.97028 4.30674 4.52916 4.62237 4.68757 4.70153 4.73720 4.87233 4.89947 4.94913 5.02682 5.25061 5.27535 5.34338 5.36962 5.42919 5.47800 5.60993 5.61978 5.67775 5.84165 5.85202 5.96371 6.01203 6.11833 6.37920 6.45631 6.70999 6.77703 6.82845 7.17349 7.78316 8.02322 8.09051 8.53256 9.64540 10.23051 10.58985 11.57918 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.020367 B = 0.003592 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.461337 B = 7792.386353 C = 8511.636501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.364 6.364 4 C 0.047 3.953 5 C 0.506 3.494 6 O -0.508 6.508 7 N -0.610 5.610 8 C 0.104 3.896 9 C -0.167 4.167 10 C 0.073 3.927 11 O -0.368 6.368 12 C 0.088 3.912 13 H 0.053 0.947 14 C 0.166 3.834 15 N -0.726 5.726 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 C 0.082 3.918 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.035 0.965 39 H 0.027 0.973 40 H 0.387 0.613 41 H 0.254 0.746 42 H 0.094 0.906 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.262 -21.931 13.366 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.282 6.282 4 C -0.033 4.033 5 C 0.292 3.708 6 O -0.381 6.381 7 N -0.346 5.346 8 C -0.018 4.018 9 C -0.205 4.205 10 C -0.004 4.004 11 O -0.286 6.286 12 C 0.028 3.972 13 H 0.070 0.930 14 C 0.038 3.962 15 N -0.370 5.370 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.582 5.582 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.041 4.041 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.220 0.780 41 H 0.064 0.936 42 H 0.113 0.887 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.697 -21.021 13.340 24.954 hybrid contribution 0.175 0.165 -0.360 0.433 sum -1.522 -20.856 12.979 24.612 Atomic orbital electron populations 1.21733 0.93315 1.02209 1.03632 1.22549 0.96113 0.83354 1.00075 1.88050 1.18443 1.26348 1.95367 1.22259 0.84011 0.94906 1.02161 1.20326 0.82637 0.90639 0.77186 1.90768 1.48757 1.51617 1.47004 1.47890 1.05281 1.07254 1.74137 1.22022 0.89790 0.89677 1.00325 1.22519 0.97965 1.02502 0.97539 1.22111 1.00227 0.81808 0.96247 1.86438 1.41906 1.19875 1.80371 1.22297 0.88934 0.94995 0.90988 0.92951 1.20610 0.98611 0.87302 0.89673 1.42220 1.88257 1.05746 1.00805 1.19194 1.41822 0.84011 0.91816 0.91219 1.24736 1.03126 0.97644 0.95577 1.69670 1.57442 1.32862 0.98224 0.86251 0.77871 0.85168 0.76797 1.21325 1.21753 1.21296 1.22447 1.02311 0.79974 0.99344 0.90981 0.91672 0.91525 0.93173 0.93285 0.90376 0.90456 0.90282 0.91222 0.89626 0.89779 0.93600 0.89223 0.94724 0.95475 0.77957 0.93582 0.88732 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.15 0.38 -0.78 16 2 C 0.06 0.46 6.66 37.15 0.25 0.71 16 3 O -0.36 -4.59 9.87 -55.14 -0.54 -5.13 16 4 C 0.05 0.48 4.75 36.01 0.17 0.65 16 5 C 0.51 7.22 7.71 -10.98 -0.08 7.13 16 6 O -0.51 -9.80 15.93 -14.35 -0.23 -10.03 16 7 N -0.61 -7.57 2.19 -172.45 -0.38 -7.95 16 8 C 0.10 0.85 6.00 -3.20 -0.02 0.83 16 9 C -0.17 -1.51 5.78 -27.18 -0.16 -1.67 16 10 C 0.07 0.95 6.37 36.41 0.23 1.18 16 11 O -0.37 -6.61 9.38 -26.54 -0.25 -6.85 16 12 C 0.09 1.62 2.68 -25.76 -0.07 1.55 16 13 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 14 C 0.17 3.64 5.92 -4.04 -0.02 3.61 16 15 N -0.73 -19.89 5.54 -59.90 -0.33 -20.22 16 16 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 17 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 19 N -0.93 -29.53 13.06 55.49 0.72 -28.81 16 20 Si 0.91 23.28 29.55 -169.99 -5.02 18.25 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 C 0.08 1.21 4.87 -3.81 -0.02 1.19 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.62 7.41 -51.93 -0.38 0.24 16 31 H 0.08 0.55 8.04 -51.93 -0.42 0.14 16 32 H 0.08 0.46 5.88 -51.93 -0.31 0.15 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 36 H 0.05 0.60 7.40 -51.93 -0.38 0.22 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.39 11.26 7.65 -40.82 -0.31 10.95 16 41 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 42 H 0.09 1.50 7.27 -51.93 -0.38 1.12 16 43 H 0.08 1.10 8.11 -51.93 -0.42 0.67 16 LS Contribution 348.84 15.07 5.26 5.26 Total: -1.00 -36.98 348.84 -7.57 -44.56 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.22 Total: 4.24 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 0.41 Total: 6.70 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.02 Total: -56.98 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -1.02 Total: -22.02 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.98 -7.57 -44.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199753697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.720 kcal (2) G-P(sol) polarization free energy of solvation -36.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds