Wall clock time and date at job start Tue Mar 31 2020 02:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99991 * 2 1 4 4 H 1.09000 * 109.46761 * 329.99736 * 3 2 1 5 5 C 1.52995 * 109.47367 * 89.99583 * 3 2 1 6 6 C 1.50698 * 109.46898 * 209.99915 * 3 2 1 7 7 O 1.21277 * 120.00364 * 347.67627 * 6 3 2 8 8 N 1.34776 * 119.99582 * 167.68311 * 6 3 2 9 9 C 1.47506 * 118.76123 * 4.44872 * 8 6 3 10 10 C 1.53952 * 110.82066 * 138.25313 * 9 8 6 11 11 C 1.51539 * 109.72765 * 320.31241 * 10 9 8 12 12 O 1.42148 * 108.76845 * 91.29474 * 11 10 9 13 13 C 1.38021 * 119.43489 * 272.78115 * 12 11 10 14 14 H 1.08993 * 109.47017 * 303.42789 * 13 12 11 15 15 C 1.52999 * 109.46750 * 183.42871 * 13 12 11 16 16 N 1.46498 * 109.47034 * 64.99165 * 15 13 12 17 17 C 1.36933 * 119.99868 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00295 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99704 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00024 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00270 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47224 * 89.99328 * 21 19 17 23 23 H 1.48497 * 109.47158 * 209.99814 * 21 19 17 24 24 H 1.48504 * 109.47033 * 329.99773 * 21 19 17 25 25 C 1.45131 * 118.75460 * 184.72048 * 8 6 3 26 26 H 1.08999 * 109.46813 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47250 * 300.00067 * 1 2 3 28 28 H 1.08998 * 109.46777 * 60.00187 * 1 2 3 29 29 H 1.09000 * 109.47222 * 171.61418 * 5 3 2 30 30 H 1.09002 * 109.46996 * 291.61696 * 5 3 2 31 31 H 1.09001 * 109.47263 * 51.61448 * 5 3 2 32 32 H 1.08999 * 109.17232 * 258.77412 * 9 8 6 33 33 H 1.09000 * 109.16172 * 17.97841 * 9 8 6 34 34 H 1.09000 * 109.46172 * 200.18001 * 10 9 8 35 35 H 1.08999 * 109.27625 * 80.32407 * 10 9 8 36 36 H 1.09003 * 109.58587 * 331.50678 * 11 10 9 37 37 H 1.09004 * 109.70371 * 211.14772 * 11 10 9 38 38 H 1.09003 * 109.46890 * 184.98333 * 15 13 12 39 39 H 1.08999 * 109.47325 * 304.98552 * 15 13 12 40 40 H 0.97004 * 120.00182 * 359.97438 * 16 15 13 41 41 H 0.96995 * 120.00113 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.45856 * 29.30873 * 25 8 6 43 43 H 1.09000 * 109.45815 * 149.27477 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2176 1.7715 1.4424 6 6 3.3386 1.2639 -0.7104 7 8 3.8527 0.1973 -0.9731 8 7 3.9554 2.4120 -1.0536 9 6 3.3560 3.6927 -0.6337 10 6 4.4403 4.6702 -0.1449 11 6 5.4793 3.9193 0.6631 12 8 6.5170 3.4929 -0.2097 13 6 6.3957 2.2865 -0.8692 14 1 6.2486 1.4881 -0.1420 15 6 7.6683 2.0151 -1.6740 16 7 8.7985 1.8442 -0.7577 17 6 10.0493 1.5897 -1.2534 18 1 10.2028 1.5153 -2.3197 19 6 11.1203 1.4283 -0.3851 20 7 12.3226 1.1831 -0.8614 21 14 10.8551 1.5577 1.4595 22 1 10.5290 0.2168 2.0079 23 1 12.0922 2.0682 2.1029 24 1 9.7330 2.4909 1.7340 25 6 5.1812 2.3417 -1.8275 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 2.7936 2.6969 1.4461 30 1 1.2488 1.9447 1.9111 31 1 2.7580 1.0049 1.9978 32 1 2.8258 4.1336 -1.4779 33 1 2.6490 3.5087 0.1752 34 1 3.9823 5.4390 0.4775 35 1 4.9182 5.1374 -1.0060 36 1 5.0183 3.0512 1.1344 37 1 5.8928 4.5747 1.4297 38 1 7.5385 1.1077 -2.2639 39 1 7.8638 2.8562 -2.3393 40 1 8.6607 1.9114 0.2002 41 1 13.0708 1.0700 -0.2547 42 1 5.1676 1.4461 -2.4486 43 1 5.2601 3.2234 -2.4635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199976391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:36 Heat of formation + Delta-G solvation = -117.388788 kcal Electronic energy + Delta-G solvation = -24247.201394 eV Core-core repulsion = 20713.987773 eV Total energy + Delta-G solvation = -3533.213621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90051 -40.04137 -38.53198 -37.11148 -36.38831 -34.41828 -33.12290 -32.70676 -30.44685 -27.95442 -27.74260 -26.84148 -25.09965 -23.78943 -22.82603 -22.32787 -20.37358 -19.82798 -18.72374 -18.15127 -17.70937 -17.08728 -16.95771 -16.60079 -16.31124 -16.16497 -15.86676 -15.23911 -14.96746 -14.90749 -14.80378 -14.28412 -14.10207 -13.93139 -13.79865 -13.47932 -13.26426 -13.23622 -12.87915 -12.81382 -12.60754 -12.38915 -12.19716 -12.10735 -11.88321 -11.78985 -11.49190 -11.05415 -11.01174 -10.61066 -10.54313 -9.71565 -9.34408 -8.05661 -5.38956 1.34305 1.37592 1.42527 1.45878 1.66067 2.45967 2.66090 2.84914 3.25918 3.34206 3.44766 3.79384 3.81344 3.91982 3.95505 4.01605 4.03447 4.19836 4.23978 4.39633 4.42745 4.46843 4.54199 4.56123 4.65519 4.68250 4.77528 4.82131 4.84889 4.85429 5.03955 5.10810 5.13588 5.21807 5.46450 5.70551 5.99857 6.17938 6.26571 6.68184 7.03107 7.04842 7.78977 7.99250 9.15836 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.004200 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.298522 B = 6665.405406 C = 6942.839155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.401 6.401 3 C 0.074 3.926 4 H 0.123 0.877 5 C -0.177 4.177 6 C 0.496 3.504 7 O -0.572 6.572 8 N -0.604 5.604 9 C 0.084 3.916 10 C -0.157 4.157 11 C 0.059 3.941 12 O -0.397 6.397 13 C 0.101 3.899 14 H 0.025 0.975 15 C 0.165 3.835 16 N -0.754 5.754 17 C -0.237 4.237 18 H 0.060 0.940 19 C -0.062 4.062 20 N -0.982 5.982 21 Si 0.954 3.046 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.256 1.256 25 C 0.094 3.906 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.101 0.899 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.365 0.635 41 H 0.259 0.741 42 H 0.076 0.924 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.952 9.897 4.976 33.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.320 6.320 3 C 0.013 3.987 4 H 0.140 0.860 5 C -0.234 4.234 6 C 0.284 3.716 7 O -0.450 6.450 8 N -0.338 5.338 9 C -0.036 4.036 10 C -0.195 4.195 11 C -0.017 4.017 12 O -0.316 6.316 13 C 0.041 3.959 14 H 0.043 0.957 15 C 0.038 3.962 16 N -0.400 5.400 17 C -0.368 4.368 18 H 0.078 0.922 19 C -0.253 4.253 20 N -0.632 5.632 21 Si 0.781 3.219 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.181 1.181 25 C -0.031 4.031 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.119 0.881 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.198 0.802 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -31.307 9.266 4.627 32.976 hybrid contribution 0.391 -0.464 0.792 0.998 sum -30.916 8.802 5.419 32.598 Atomic orbital electron populations 1.23108 0.78406 1.04160 1.01725 1.88043 1.22193 1.26535 1.95193 1.22095 0.91729 0.87100 0.97760 0.85955 1.22481 1.05154 1.02319 0.93472 1.21421 0.87818 0.83550 0.78782 1.90730 1.67612 1.31542 1.55150 1.48002 1.24466 1.07135 1.54172 1.22776 0.96372 0.81916 1.02558 1.22505 0.96237 0.98769 1.01951 1.22513 0.88814 0.98197 0.92183 1.86351 1.47090 1.37426 1.60773 1.21897 0.94606 0.85791 0.93589 0.95700 1.20737 0.84862 0.98412 0.92174 1.42589 1.04923 1.87679 1.04774 1.19076 0.85247 1.39316 0.93151 0.92189 1.25475 0.94889 1.02258 1.02686 1.69874 1.00165 1.57608 1.35574 0.85409 0.77419 0.78303 0.80731 1.20719 1.21368 1.18099 1.22120 0.82734 1.04302 0.93913 0.88989 0.91528 0.92424 0.88673 0.87870 0.93244 0.88370 0.86454 0.85644 0.90502 0.93723 0.88101 0.94346 0.94240 0.80217 0.93176 0.90585 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.48 16 2 O -0.40 -9.01 9.91 -130.24 -1.29 -10.30 16 3 C 0.07 1.27 2.29 29.85 0.07 1.34 16 4 H 0.12 1.09 7.24 -2.39 -0.02 1.07 16 5 C -0.18 -2.16 9.00 71.98 0.65 -1.52 16 6 C 0.50 13.13 6.98 87.66 0.61 13.74 16 7 O -0.57 -22.18 16.02 15.72 0.25 -21.93 16 8 N -0.60 -12.96 2.18 -817.21 -1.78 -14.74 16 9 C 0.08 0.89 5.42 86.51 0.47 1.36 16 10 C -0.16 -1.90 5.79 30.44 0.18 -1.72 16 11 C 0.06 1.24 6.37 71.50 0.46 1.69 16 12 O -0.40 -12.86 9.38 -117.94 -1.11 -13.96 16 13 C 0.10 3.53 2.68 31.21 0.08 3.62 16 14 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 15 C 0.16 7.06 5.92 86.38 0.51 7.57 16 16 N -0.75 -39.47 5.34 -343.46 -1.83 -41.31 16 17 C -0.24 -14.58 10.47 84.04 0.88 -13.70 16 18 H 0.06 3.97 8.06 -2.91 -0.02 3.94 16 19 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 20 N -0.98 -65.58 13.97 21.65 0.30 -65.27 16 21 Si 0.95 48.67 27.74 68.60 1.90 50.58 16 22 H -0.28 -14.07 7.11 99.48 0.71 -13.37 16 23 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 24 H -0.26 -12.14 6.52 99.48 0.65 -11.50 16 25 C 0.09 2.55 4.83 87.25 0.42 2.98 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 0.45 8.09 -2.39 -0.02 0.43 16 28 H 0.06 0.49 8.08 -2.39 -0.02 0.47 16 29 H 0.09 0.84 5.05 -2.39 -0.01 0.83 16 30 H 0.10 0.62 8.09 -2.39 -0.02 0.60 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.12 0.64 3.83 -2.39 -0.01 0.63 16 34 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 1.13 8.01 -2.39 -0.02 1.11 16 36 H 0.04 0.96 6.93 -2.39 -0.02 0.95 16 37 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.36 18.68 5.51 -92.71 -0.51 18.17 16 41 H 0.26 16.39 8.31 -92.71 -0.77 15.62 16 42 H 0.08 2.37 7.35 -2.39 -0.02 2.35 16 43 H 0.11 2.46 8.11 -2.39 -0.02 2.44 16 Total: -1.00 -87.12 339.14 2.89 -84.22 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.43 Total: 19.27 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 6.02 Total: 13.45 kcal Atomic # 7 Polarization: -118.01 SS G_CDS: -3.31 Total: -121.33 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -2.15 Total: -46.19 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 1.90 Total: 50.58 kcal Total: -87.12 2.89 -84.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199976391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.167 kcal (2) G-P(sol) polarization free energy of solvation -87.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds