Wall clock time and date at job start Tue Mar 31 2020 02:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99562 * 2 1 4 4 C 1.52995 * 109.47034 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47393 * 54.99904 * 4 3 2 6 6 C 1.53003 * 109.47111 * 295.00070 * 4 3 2 7 7 C 1.50704 * 109.47226 * 175.00176 * 4 3 2 8 8 O 1.21274 * 119.99922 * 359.97438 * 7 4 3 9 9 N 1.34775 * 120.00095 * 180.02562 * 7 4 3 10 10 C 1.46499 * 120.00232 * 179.97438 * 9 7 4 11 11 H 1.09005 * 110.63841 * 31.85338 * 10 9 7 12 12 C 1.54316 * 110.87145 * 268.60729 * 10 9 7 13 13 N 1.47023 * 107.27490 * 219.36831 * 12 10 9 14 14 C 1.36935 * 125.65217 * 178.98291 * 13 12 10 15 15 H 1.08002 * 120.00066 * 0.02562 * 14 13 12 16 16 C 1.38814 * 119.99703 * 180.02562 * 14 13 12 17 17 N 1.31613 * 120.00425 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99844 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46828 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47340 * 120.00042 * 18 16 14 21 21 H 1.48499 * 109.47145 * 240.00252 * 18 16 14 22 22 C 1.47433 * 108.69869 * 358.94415 * 13 12 10 23 23 C 1.54910 * 104.83102 * 24.12560 * 22 13 12 24 24 H 1.08997 * 111.03758 * 81.07988 * 23 22 13 25 25 O 1.42905 * 111.00111 * 204.91855 * 23 22 13 26 26 C 1.42898 * 113.99615 * 262.19652 * 25 23 22 27 27 H 1.08998 * 109.47393 * 60.00070 * 1 2 3 28 28 H 1.09004 * 109.46673 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47042 * 299.99646 * 1 2 3 30 30 H 1.08998 * 109.46996 * 60.00270 * 3 2 1 31 31 H 1.08998 * 109.47064 * 300.00285 * 3 2 1 32 32 H 1.08994 * 109.46959 * 59.99929 * 6 4 3 33 33 H 1.09000 * 109.46831 * 179.97438 * 6 4 3 34 34 H 1.08996 * 109.46851 * 299.99724 * 6 4 3 35 35 H 0.97001 * 119.99955 * 359.97438 * 9 7 4 36 36 H 1.08999 * 109.88620 * 338.78998 * 12 10 9 37 37 H 1.09006 * 109.88429 * 99.79664 * 12 10 9 38 38 H 0.96995 * 120.00416 * 179.97438 * 17 16 14 39 39 H 1.09006 * 110.36319 * 265.28904 * 22 13 12 40 40 H 1.08995 * 110.36350 * 142.96557 * 22 13 12 41 41 H 1.09007 * 109.47325 * 300.00090 * 26 25 23 42 42 H 1.09001 * 109.47659 * 60.00215 * 26 25 23 43 43 H 1.09006 * 109.47181 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 1 3.8508 0.5686 -0.8427 6 6 3.9962 0.5366 1.3064 7 6 4.1478 2.5562 -0.1244 8 8 3.4346 3.5338 -0.2047 9 7 5.4880 2.6962 -0.1469 10 6 6.0834 4.0293 -0.2678 11 1 5.4520 4.7770 0.2122 12 6 6.3279 4.3901 -1.7482 13 7 7.6171 5.0933 -1.8191 14 6 8.2074 5.5646 -2.9612 15 1 7.7198 5.4313 -3.9156 16 6 9.4324 6.2139 -2.8922 17 7 10.0268 6.3759 -1.7291 18 14 10.2374 6.8576 -4.4501 19 1 9.3719 6.5511 -5.6173 20 1 10.4198 8.3274 -4.3422 21 1 11.5599 6.2065 -4.6294 22 6 8.1686 5.2076 -0.4566 23 6 7.5128 4.0489 0.3352 24 1 8.0284 3.1068 0.1490 25 8 7.4749 4.3412 1.7336 26 6 8.5397 3.7491 2.4802 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.5533 -0.4553 1.3959 33 1 5.0828 0.4502 1.3057 34 1 3.6809 1.1527 2.1484 35 1 6.0585 1.9143 -0.0831 36 1 6.3675 3.4818 -2.3495 37 1 5.5291 5.0384 -2.1086 38 1 10.8829 6.8292 -1.6809 39 1 7.8983 6.1679 -0.0173 40 1 9.2520 5.0893 -0.4748 41 1 8.4968 2.6647 2.3769 42 1 9.4950 4.1125 2.1015 43 1 8.4394 4.0178 3.5318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212011596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:52 Heat of formation + Delta-G solvation = -100.218326 kcal Electronic energy + Delta-G solvation = -23588.819387 eV Core-core repulsion = 20056.350333 eV Total energy + Delta-G solvation = -3532.469054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.03402 -38.42171 -37.72092 -35.93293 -34.17699 -33.63734 -31.67456 -28.83496 -27.62595 -27.06255 -26.09326 -25.89996 -24.45916 -22.87173 -20.67508 -20.22828 -19.70618 -17.62096 -17.01144 -16.52908 -16.22767 -15.83071 -15.61115 -15.22076 -14.91077 -14.63441 -14.34724 -14.21934 -13.79063 -13.46715 -13.17695 -12.91383 -12.61778 -12.34639 -12.22147 -11.90524 -11.71796 -11.56904 -11.37705 -11.29448 -11.04314 -11.01904 -10.85608 -10.77547 -10.18848 -9.91739 -9.85230 -9.84161 -9.66518 -9.10724 -8.72472 -8.65720 -6.91726 -5.71266 -3.14427 2.75879 3.05071 3.37405 3.43254 3.45732 3.82833 4.11247 4.47598 4.57260 4.75977 4.87719 5.10138 5.13004 5.16718 5.28420 5.40827 5.42418 5.47078 5.48318 5.53688 5.59903 5.66007 5.67385 5.67966 5.77992 5.83744 5.93353 6.03247 6.06969 6.20683 6.46650 6.65969 6.87463 6.93247 7.24163 7.54125 7.65225 7.71854 7.78765 8.24753 8.36538 9.14339 9.74672 10.37099 11.32538 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021737 B = 0.003815 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.826646 B = 7337.258394 C = 8317.211062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.080 3.920 4 C -0.110 4.110 5 H 0.105 0.895 6 C -0.139 4.139 7 C 0.521 3.479 8 O -0.542 6.542 9 N -0.712 5.712 10 C 0.134 3.866 11 H 0.103 0.897 12 C 0.130 3.870 13 N -0.601 5.601 14 C -0.222 4.222 15 H 0.081 0.919 16 C -0.011 4.011 17 N -0.923 5.923 18 Si 0.917 3.083 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.141 3.859 23 C 0.055 3.945 24 H 0.067 0.933 25 O -0.380 6.380 26 C 0.035 3.965 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.398 0.602 36 H 0.030 0.970 37 H 0.033 0.967 38 H 0.253 0.747 39 H 0.027 0.973 40 H 0.113 0.887 41 H 0.033 0.967 42 H 0.046 0.954 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.778 -13.535 7.335 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.003 3.997 4 C -0.131 4.131 5 H 0.123 0.877 6 C -0.197 4.197 7 C 0.307 3.693 8 O -0.419 6.419 9 N -0.362 5.362 10 C 0.029 3.971 11 H 0.121 0.879 12 C 0.003 3.997 13 N -0.328 5.328 14 C -0.350 4.350 15 H 0.099 0.901 16 C -0.206 4.206 17 N -0.571 5.571 18 Si 0.748 3.252 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.016 3.984 23 C -0.005 4.005 24 H 0.085 0.915 25 O -0.298 6.298 26 C -0.062 4.062 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.232 0.768 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.130 0.870 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.141 -12.753 7.293 18.438 hybrid contribution 0.720 0.075 -0.837 1.107 sum -10.421 -12.678 6.456 17.636 Atomic orbital electron populations 1.22716 0.80848 1.02544 1.00189 1.87790 1.19791 1.28102 1.95558 1.22230 0.91622 0.84009 1.01807 1.21179 0.95235 0.94961 1.01740 0.87659 1.21716 1.01289 1.01463 0.95187 1.20304 0.82557 0.90545 0.75916 1.90709 1.60891 1.40656 1.49608 1.45955 1.06362 1.09774 1.74081 1.22188 0.93925 0.83959 0.97027 0.87882 1.21595 0.89887 0.95882 0.92317 1.44314 1.17931 1.66942 1.03639 1.19147 1.00790 1.29789 0.85312 0.90132 1.24809 0.97694 1.00824 0.97276 1.69758 1.17588 1.47779 1.21985 0.85956 0.79063 0.78356 0.81868 1.20452 1.21660 1.21710 1.22300 1.01078 0.92499 0.82562 1.24043 0.94997 1.00399 0.81025 0.91516 1.87854 1.48694 1.74269 1.19025 1.22707 0.90961 0.96351 0.96159 0.93989 0.89684 0.94045 0.92439 0.92179 0.90797 0.92071 0.92152 0.76794 0.95248 0.94904 0.93639 0.95538 0.86972 0.94827 0.93538 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.31 10.24 -35.23 -0.36 -4.67 16 3 C 0.08 0.94 4.67 37.15 0.17 1.11 16 4 C -0.11 -1.25 2.96 -91.77 -0.27 -1.52 16 5 H 0.11 1.07 8.14 -51.92 -0.42 0.65 16 6 C -0.14 -1.32 8.99 37.16 0.33 -0.98 16 7 C 0.52 7.83 7.15 -10.98 -0.08 7.76 16 8 O -0.54 -10.23 15.56 5.56 0.09 -10.14 16 9 N -0.71 -10.56 5.01 -52.03 -0.26 -10.83 16 10 C 0.13 2.52 3.05 -66.10 -0.20 2.32 16 11 H 0.10 2.16 7.55 -51.93 -0.39 1.76 16 12 C 0.13 2.83 7.00 -3.07 -0.02 2.80 16 13 N -0.60 -15.39 3.39 -170.07 -0.58 -15.97 16 14 C -0.22 -6.16 10.27 -15.06 -0.15 -6.32 16 15 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 16 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 17 N -0.92 -26.47 10.09 55.49 0.56 -25.91 16 18 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 C 0.14 3.43 5.62 -2.52 -0.01 3.42 16 23 C 0.05 1.05 3.17 -24.58 -0.08 0.97 16 24 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 25 O -0.38 -6.92 10.51 -35.23 -0.37 -7.30 16 26 C 0.04 0.49 10.84 101.05 1.10 1.59 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.75 7.95 -51.93 -0.41 0.33 16 32 H 0.07 0.65 7.82 -51.93 -0.41 0.25 16 33 H 0.06 0.51 7.57 -51.93 -0.39 0.12 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.40 4.79 7.98 -40.82 -0.33 4.47 16 36 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.11 2.99 5.87 -51.93 -0.30 2.69 16 41 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 352.06 15.07 5.31 5.31 Total: -1.00 -32.26 352.06 -6.09 -38.35 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.25 Total: 2.18 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 1.80 Total: 12.13 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.28 Total: -52.71 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.64 Total: -22.11 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.26 -6.09 -38.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212011596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.866 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds