Wall clock time and date at job start Tue Mar 31 2020 02:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99562 * 2 1 4 4 C 1.52995 * 109.47034 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47393 * 54.99904 * 4 3 2 6 6 C 1.53003 * 109.47111 * 295.00070 * 4 3 2 7 7 C 1.50704 * 109.47226 * 175.00176 * 4 3 2 8 8 O 1.21274 * 119.99922 * 359.97438 * 7 4 3 9 9 N 1.34775 * 120.00095 * 180.02562 * 7 4 3 10 10 C 1.46499 * 120.00232 * 179.97438 * 9 7 4 11 11 H 1.09005 * 110.63841 * 31.85338 * 10 9 7 12 12 C 1.54316 * 110.87145 * 268.60729 * 10 9 7 13 13 N 1.47023 * 107.27490 * 219.36831 * 12 10 9 14 14 C 1.36935 * 125.65217 * 178.98291 * 13 12 10 15 15 H 1.08002 * 120.00066 * 0.02562 * 14 13 12 16 16 C 1.38814 * 119.99703 * 180.02562 * 14 13 12 17 17 N 1.31613 * 120.00425 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99844 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46828 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47340 * 120.00042 * 18 16 14 21 21 H 1.48499 * 109.47145 * 240.00252 * 18 16 14 22 22 C 1.47433 * 108.69869 * 358.94415 * 13 12 10 23 23 C 1.54910 * 104.83102 * 24.12560 * 22 13 12 24 24 H 1.08997 * 111.03758 * 81.07988 * 23 22 13 25 25 O 1.42905 * 111.00111 * 204.91855 * 23 22 13 26 26 C 1.42898 * 113.99615 * 262.19652 * 25 23 22 27 27 H 1.08998 * 109.47393 * 60.00070 * 1 2 3 28 28 H 1.09004 * 109.46673 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47042 * 299.99646 * 1 2 3 30 30 H 1.08998 * 109.46996 * 60.00270 * 3 2 1 31 31 H 1.08998 * 109.47064 * 300.00285 * 3 2 1 32 32 H 1.08994 * 109.46959 * 59.99929 * 6 4 3 33 33 H 1.09000 * 109.46831 * 179.97438 * 6 4 3 34 34 H 1.08996 * 109.46851 * 299.99724 * 6 4 3 35 35 H 0.97001 * 119.99955 * 359.97438 * 9 7 4 36 36 H 1.08999 * 109.88620 * 338.78998 * 12 10 9 37 37 H 1.09006 * 109.88429 * 99.79664 * 12 10 9 38 38 H 0.96995 * 120.00416 * 179.97438 * 17 16 14 39 39 H 1.09006 * 110.36319 * 265.28904 * 22 13 12 40 40 H 1.08995 * 110.36350 * 142.96557 * 22 13 12 41 41 H 1.09007 * 109.47325 * 300.00090 * 26 25 23 42 42 H 1.09001 * 109.47659 * 60.00215 * 26 25 23 43 43 H 1.09006 * 109.47181 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 1 3.8508 0.5686 -0.8427 6 6 3.9962 0.5366 1.3064 7 6 4.1478 2.5562 -0.1244 8 8 3.4346 3.5338 -0.2047 9 7 5.4880 2.6962 -0.1469 10 6 6.0834 4.0293 -0.2678 11 1 5.4520 4.7770 0.2122 12 6 6.3279 4.3901 -1.7482 13 7 7.6171 5.0933 -1.8191 14 6 8.2074 5.5646 -2.9612 15 1 7.7198 5.4313 -3.9156 16 6 9.4324 6.2139 -2.8922 17 7 10.0268 6.3759 -1.7291 18 14 10.2374 6.8576 -4.4501 19 1 9.3719 6.5511 -5.6173 20 1 10.4198 8.3274 -4.3422 21 1 11.5599 6.2065 -4.6294 22 6 8.1686 5.2076 -0.4566 23 6 7.5128 4.0489 0.3352 24 1 8.0284 3.1068 0.1490 25 8 7.4749 4.3412 1.7336 26 6 8.5397 3.7491 2.4802 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.5533 -0.4553 1.3959 33 1 5.0828 0.4502 1.3057 34 1 3.6809 1.1527 2.1484 35 1 6.0585 1.9143 -0.0831 36 1 6.3675 3.4818 -2.3495 37 1 5.5291 5.0384 -2.1086 38 1 10.8829 6.8292 -1.6809 39 1 7.8983 6.1679 -0.0173 40 1 9.2520 5.0893 -0.4748 41 1 8.4968 2.6647 2.3769 42 1 9.4950 4.1125 2.1015 43 1 8.4394 4.0178 3.5318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212011596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:51 Heat of formation + Delta-G solvation = -124.323736 kcal Electronic energy + Delta-G solvation = -23589.864676 eV Core-core repulsion = 20056.350333 eV Total energy + Delta-G solvation = -3533.514343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32604 -39.82645 -38.70221 -37.52580 -35.68073 -34.73939 -33.49455 -30.57740 -28.94489 -28.18953 -27.50302 -26.70059 -26.15193 -24.09040 -22.38276 -21.81055 -20.99458 -19.16800 -18.45042 -17.96677 -17.29664 -17.07933 -16.75336 -16.70447 -16.02302 -15.92392 -15.74527 -15.58707 -15.21394 -14.97171 -14.46729 -14.28943 -13.92622 -13.72559 -13.44442 -13.18746 -13.15863 -13.03075 -12.76218 -12.54529 -12.41233 -12.34651 -12.28192 -12.01711 -11.91499 -11.85551 -11.57957 -10.95285 -10.81068 -10.66196 -10.56659 -10.10888 -8.97986 -7.81496 -5.28930 1.47174 1.48603 1.55465 1.59053 1.89407 2.44449 2.73996 2.91792 3.29621 3.55091 3.61029 3.80746 3.88302 3.96157 4.01895 4.08307 4.32609 4.37623 4.47152 4.49682 4.52226 4.61518 4.65691 4.66938 4.68532 4.83605 4.86463 4.88929 4.92181 4.93133 5.01439 5.28467 5.31724 5.42906 5.44470 5.68035 6.14420 6.18505 6.31259 6.48202 7.03906 7.17680 7.68459 8.30834 9.20053 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021737 B = 0.003815 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.826646 B = 7337.258394 C = 8317.211062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.083 3.917 4 C -0.100 4.100 5 H 0.125 0.875 6 C -0.134 4.134 7 C 0.521 3.479 8 O -0.584 6.584 9 N -0.698 5.698 10 C 0.151 3.849 11 H 0.079 0.921 12 C 0.131 3.869 13 N -0.619 5.619 14 C -0.243 4.243 15 H 0.083 0.917 16 C -0.062 4.062 17 N -0.947 5.947 18 Si 0.984 3.016 19 H -0.267 1.267 20 H -0.294 1.294 21 H -0.286 1.286 22 C 0.146 3.854 23 C 0.078 3.922 24 H 0.092 0.908 25 O -0.396 6.396 26 C 0.027 3.973 27 H 0.044 0.956 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.416 0.584 36 H 0.044 0.956 37 H 0.015 0.985 38 H 0.250 0.750 39 H -0.013 1.013 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.035 0.965 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.972 -15.945 7.532 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C 0.006 3.994 4 C -0.121 4.121 5 H 0.143 0.857 6 C -0.192 4.192 7 C 0.309 3.691 8 O -0.463 6.463 9 N -0.350 5.350 10 C 0.045 3.955 11 H 0.097 0.903 12 C 0.004 3.996 13 N -0.346 5.346 14 C -0.371 4.371 15 H 0.101 0.899 16 C -0.255 4.255 17 N -0.596 5.596 18 Si 0.812 3.188 19 H -0.192 1.192 20 H -0.221 1.221 21 H -0.213 1.213 22 C 0.019 3.981 23 C 0.018 3.982 24 H 0.109 0.891 25 O -0.315 6.315 26 C -0.069 4.069 27 H 0.062 0.938 28 H 0.124 0.876 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.254 0.746 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.060 0.940 39 H 0.005 0.995 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.347 -15.219 7.504 20.413 hybrid contribution 0.721 0.837 -0.857 1.398 sum -10.626 -14.382 6.647 19.077 Atomic orbital electron populations 1.22939 0.79400 1.04069 1.00644 1.87764 1.21386 1.27309 1.95586 1.22118 0.92004 0.84394 1.00905 1.21153 0.94750 0.92482 1.03716 0.85730 1.21717 1.02411 1.01546 0.93477 1.21002 0.82077 0.91618 0.74431 1.90699 1.61783 1.42505 1.51337 1.45724 1.06727 1.08713 1.73827 1.21656 0.93629 0.85568 0.94678 0.90268 1.21676 0.87729 0.95563 0.94636 1.44557 1.19332 1.67142 1.03608 1.19496 1.01231 1.30174 0.86235 0.89913 1.25657 0.98271 1.01238 1.00319 1.69994 1.17635 1.48200 1.23803 0.84928 0.78084 0.77117 0.78657 1.19191 1.22082 1.21255 1.22065 1.00059 0.92995 0.82933 1.23615 0.94388 0.98860 0.81289 0.89052 1.87846 1.50164 1.75216 1.18237 1.22994 0.89222 0.97978 0.96734 0.93753 0.87647 0.93432 0.93088 0.93536 0.89624 0.90420 0.92882 0.74629 0.93819 0.96661 0.94034 0.99465 0.89441 0.91902 0.94625 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.97 10.24 -148.98 -1.53 -9.50 16 3 C 0.08 1.83 4.67 71.98 0.34 2.17 16 4 C -0.10 -2.04 2.96 -11.54 -0.03 -2.07 16 5 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 6 C -0.13 -2.13 8.99 71.98 0.65 -1.48 16 7 C 0.52 14.99 7.15 87.66 0.63 15.62 16 8 O -0.58 -22.11 15.56 -3.01 -0.05 -22.15 16 9 N -0.70 -19.46 5.01 -436.93 -2.19 -21.65 16 10 C 0.15 5.65 3.05 46.18 0.14 5.79 16 11 H 0.08 3.39 7.55 -2.38 -0.02 3.37 16 12 C 0.13 5.71 7.00 86.73 0.61 6.32 16 13 N -0.62 -32.41 3.39 -691.97 -2.35 -34.76 16 14 C -0.24 -13.67 10.27 84.03 0.86 -12.81 16 15 H 0.08 4.49 7.83 -2.91 -0.02 4.46 16 16 C -0.06 -3.49 5.49 84.86 0.47 -3.03 16 17 N -0.95 -55.68 10.09 21.65 0.22 -55.46 16 18 Si 0.98 45.28 29.55 68.60 2.03 47.30 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 22 C 0.15 7.28 5.62 86.85 0.49 7.77 16 23 C 0.08 2.94 3.17 31.99 0.10 3.04 16 24 H 0.09 3.00 7.70 -2.39 -0.02 2.98 16 25 O -0.40 -14.03 10.51 -148.98 -1.57 -15.60 16 26 C 0.03 0.69 10.84 113.37 1.23 1.92 16 27 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.14 7.95 -2.39 -0.02 1.12 16 32 H 0.08 1.21 7.82 -2.39 -0.02 1.19 16 33 H 0.08 0.98 7.57 -2.39 -0.02 0.96 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.42 8.65 7.98 -92.71 -0.74 7.91 16 36 H 0.04 1.79 8.03 -2.39 -0.02 1.77 16 37 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 39 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 40 H 0.09 4.82 5.87 -2.39 -0.01 4.81 16 41 H 0.06 1.28 8.12 -2.38 -0.02 1.26 16 42 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -71.83 352.06 1.54 -70.29 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.25 Total: 16.69 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 6.72 Total: 24.84 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -4.32 Total: -111.88 kcal Atomic # 8 Polarization: -44.11 SS G_CDS: -3.14 Total: -47.25 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -71.83 1.54 -70.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212011596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.029 kcal (2) G-P(sol) polarization free energy of solvation -71.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds