Wall clock time and date at job start Tue Mar 31 2020 02:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47526 * 2 1 4 4 C 1.42895 * 114.00351 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47192 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46899 * 180.02562 * 5 4 3 7 7 O 1.21277 * 120.00496 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99484 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99533 * 179.72348 * 8 6 5 10 10 H 1.09002 * 110.88886 * 31.11728 * 9 8 6 11 11 C 1.54909 * 111.00474 * 267.19509 * 9 8 6 12 12 N 1.47424 * 104.83100 * 204.91607 * 11 9 8 13 13 C 1.36943 * 125.64781 * 204.17055 * 12 11 9 14 14 H 1.08000 * 120.00013 * 354.83774 * 13 12 11 15 15 C 1.38810 * 119.99809 * 174.82848 * 13 12 11 16 16 N 1.31622 * 120.00397 * 7.07016 * 15 13 12 17 17 Si 1.86799 * 120.00021 * 187.06529 * 15 13 12 18 18 H 1.48504 * 109.46812 * 94.98768 * 17 15 13 19 19 H 1.48494 * 109.47279 * 214.98843 * 17 15 13 20 20 H 1.48504 * 109.47058 * 334.99270 * 17 15 13 21 21 C 1.47026 * 108.70610 * 24.13019 * 12 11 9 22 22 C 1.54321 * 107.26664 * 358.93933 * 21 12 11 23 23 H 1.09000 * 110.72492 * 96.17016 * 22 21 12 24 24 O 1.42900 * 110.71934 * 219.44633 * 22 21 12 25 25 C 1.42903 * 114.00040 * 263.52242 * 24 22 21 26 26 H 1.09000 * 109.47406 * 59.99702 * 1 2 3 27 27 H 1.08999 * 109.47015 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46545 * 299.99506 * 1 2 3 29 29 H 1.09009 * 109.46953 * 240.00293 * 2 1 3 30 30 H 1.09000 * 109.47406 * 120.00298 * 2 1 3 31 31 H 1.09006 * 109.46891 * 60.00275 * 4 3 2 32 32 H 1.09002 * 109.47372 * 300.00320 * 4 3 2 33 33 H 1.08998 * 109.47042 * 60.00106 * 5 4 3 34 34 H 1.08997 * 109.47319 * 299.99993 * 5 4 3 35 35 H 0.96994 * 120.00440 * 359.97438 * 8 6 5 36 36 H 1.08994 * 110.36951 * 323.75379 * 11 9 8 37 37 H 1.09001 * 110.36558 * 86.08132 * 11 9 8 38 38 H 0.96995 * 120.00601 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.88080 * 239.52039 * 21 12 11 40 40 H 1.08997 * 110.00987 * 118.42609 * 21 12 11 41 41 H 1.08997 * 109.47538 * 179.97438 * 25 24 22 42 42 H 1.09000 * 109.46875 * 300.00143 * 25 24 22 43 43 H 1.09005 * 109.46933 * 59.99377 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 6 5.3278 3.0572 -0.0024 7 8 6.0152 2.0581 -0.0023 8 7 5.9074 4.2741 -0.0026 9 6 7.3678 4.3897 0.0023 10 1 7.8259 3.5503 -0.5209 11 6 7.9107 4.5066 1.4484 12 7 9.2019 5.2047 1.3114 13 6 10.2452 5.1338 2.1957 14 1 10.1304 4.5944 3.1243 15 6 11.4504 5.7551 1.8983 16 7 11.5487 6.5267 0.8366 17 14 12.9328 5.4961 3.0051 18 1 13.7711 4.3978 2.4606 19 1 13.7317 6.7464 3.0631 20 1 12.4739 5.1379 4.3713 21 6 9.1845 5.9887 0.0678 22 6 7.8208 5.7411 -0.6107 23 1 7.1157 6.5337 -0.3602 24 8 7.9739 5.6277 -2.0270 25 6 7.7189 6.8408 -2.7381 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8333 0.9767 -0.8909 32 1 3.8341 0.9763 0.8891 33 1 3.4230 3.4221 0.8888 34 1 3.4224 3.4216 -0.8911 35 1 5.3576 5.0732 -0.0023 36 1 7.2271 5.0910 2.0642 37 1 8.0586 3.5164 1.8793 38 1 12.3907 6.9612 0.6290 39 1 9.9903 5.6604 -0.5887 40 1 9.2992 7.0488 0.2936 41 1 7.8567 6.6717 -3.8060 42 1 6.6950 7.1637 -2.5501 43 1 8.4110 7.6122 -2.4004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212018025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:02 Heat of formation + Delta-G solvation = -104.124671 kcal Electronic energy + Delta-G solvation = -23027.595795 eV Core-core repulsion = 19494.957349 eV Total energy + Delta-G solvation = -3532.638446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.83903 -38.41162 -37.86150 -35.91557 -34.05677 -32.70117 -31.75567 -30.40372 -28.74530 -27.15308 -26.11990 -24.56973 -23.40478 -23.00871 -20.62403 -20.48759 -19.90847 -17.62449 -17.04875 -16.60298 -16.46484 -15.95423 -15.58674 -15.19054 -14.93231 -14.42469 -14.36659 -14.20301 -13.76223 -13.59368 -13.24073 -12.84148 -12.60665 -12.39852 -12.14393 -11.95524 -11.88623 -11.57465 -11.28124 -11.25213 -11.22019 -11.02950 -10.82098 -10.74969 -10.16231 -10.01004 -9.82675 -9.79014 -9.74680 -9.14765 -8.75364 -8.56502 -6.89596 -5.75523 -3.09336 2.76024 2.99794 3.40643 3.46061 3.47537 3.75907 4.13317 4.50703 4.68680 4.77496 4.88474 4.90897 5.04710 5.12881 5.17602 5.34423 5.37788 5.46283 5.46777 5.57155 5.59455 5.63669 5.64124 5.70164 5.72419 5.82603 5.84340 5.91488 6.04674 6.15699 6.51103 6.61329 6.84208 6.98037 7.24095 7.46875 7.65022 7.71679 7.85865 8.19215 8.36753 9.16265 9.76688 10.40120 11.36327 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.003282 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.825713 B = 8529.965547 C = 9561.445561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.395 6.395 4 C 0.078 3.922 5 C -0.138 4.138 6 C 0.517 3.483 7 O -0.540 6.540 8 N -0.715 5.715 9 C 0.131 3.869 10 H 0.107 0.893 11 C 0.131 3.869 12 N -0.600 5.600 13 C -0.230 4.230 14 H 0.081 0.919 15 C -0.006 4.006 16 N -0.920 5.920 17 Si 0.913 3.087 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.280 1.280 21 C 0.164 3.836 22 C 0.055 3.945 23 H 0.063 0.937 24 O -0.378 6.378 25 C 0.034 3.966 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.397 0.603 36 H 0.023 0.977 37 H 0.050 0.950 38 H 0.253 0.747 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.033 0.967 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.379 -4.729 -4.549 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.001 3.999 5 C -0.179 4.179 6 C 0.303 3.697 7 O -0.417 6.417 8 N -0.365 5.365 9 C 0.026 3.974 10 H 0.125 0.875 11 C 0.003 3.997 12 N -0.328 5.328 13 C -0.358 4.358 14 H 0.099 0.901 15 C -0.202 4.202 16 N -0.567 5.567 17 Si 0.743 3.257 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.206 1.206 21 C 0.039 3.961 22 C -0.004 4.004 23 H 0.081 0.919 24 O -0.296 6.296 25 C -0.063 4.063 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.231 0.769 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.052 0.948 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.720 -5.377 -4.629 20.019 hybrid contribution 0.658 0.490 0.594 1.013 sum -18.062 -4.888 -4.036 19.142 Atomic orbital electron populations 1.21747 0.93798 1.02196 1.03075 1.22443 0.95388 0.83681 1.00331 1.87791 1.21364 1.26683 1.95605 1.22117 0.80368 0.95533 1.01871 1.21463 0.92805 0.98075 1.05511 1.20319 0.89804 0.83548 0.76036 1.90729 1.65272 1.36322 1.49423 1.45922 1.07847 1.07852 1.74871 1.22426 0.78269 0.98736 0.98011 0.87481 1.21830 0.88587 0.96669 0.92609 1.44258 1.12027 1.52938 1.23601 1.19074 0.89239 1.29222 0.98265 0.90118 1.24844 0.97822 0.99489 0.98071 1.69948 1.25150 1.33759 1.27858 0.86083 0.82811 0.77206 0.79577 1.21485 1.21760 1.20566 1.21566 0.90861 0.96154 0.87566 1.23845 0.99859 0.95692 0.80964 0.91897 1.87916 1.90896 1.32653 1.18115 1.22710 0.98805 0.87868 0.96872 0.91889 0.91145 0.91868 0.93317 0.93277 0.92377 0.92295 0.88084 0.88195 0.76894 0.95967 0.93154 0.93629 0.91823 0.93539 0.90247 0.94833 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.51 6.66 37.16 0.25 0.75 16 3 O -0.39 -4.37 10.34 -35.23 -0.36 -4.74 16 4 C 0.08 0.89 5.23 37.16 0.19 1.08 16 5 C -0.14 -1.46 6.07 -27.88 -0.17 -1.63 16 6 C 0.52 7.56 7.83 -10.98 -0.09 7.47 16 7 O -0.54 -10.18 15.62 5.56 0.09 -10.10 16 8 N -0.71 -10.24 5.20 -51.73 -0.27 -10.51 16 9 C 0.13 2.45 3.15 -65.78 -0.21 2.25 16 10 H 0.11 2.32 7.54 -51.93 -0.39 1.92 16 11 C 0.13 2.78 6.93 -2.53 -0.02 2.77 16 12 N -0.60 -15.49 3.39 -170.08 -0.58 -16.07 16 13 C -0.23 -6.47 10.27 -15.06 -0.15 -6.62 16 14 H 0.08 2.20 7.84 -52.49 -0.41 1.78 16 15 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 16 N -0.92 -26.99 10.36 55.49 0.57 -26.42 16 17 Si 0.91 22.23 29.56 -169.99 -5.02 17.20 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.16 3.98 5.16 -3.06 -0.02 3.97 16 22 C 0.06 1.04 3.09 -24.90 -0.08 0.97 16 23 H 0.06 1.03 7.69 -51.93 -0.40 0.63 16 24 O -0.38 -6.96 10.43 -35.23 -0.37 -7.33 16 25 C 0.03 0.48 10.85 101.05 1.10 1.58 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.40 4.38 8.57 -40.82 -0.35 4.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.06 1.76 7.21 -51.93 -0.37 1.39 16 40 H 0.05 1.22 7.61 -51.93 -0.40 0.82 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 355.85 15.07 5.36 5.36 Total: -1.00 -33.31 355.85 -6.85 -40.16 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.37 Total: 0.75 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 1.10 Total: 11.67 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.27 Total: -52.99 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.65 Total: -22.16 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.31 -6.85 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212018025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.960 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds