Wall clock time and date at job start Tue Mar 31 2020 02:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47526 * 2 1 4 4 C 1.42895 * 114.00351 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47192 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46899 * 180.02562 * 5 4 3 7 7 O 1.21277 * 120.00496 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99484 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99533 * 179.72348 * 8 6 5 10 10 H 1.09002 * 110.88886 * 31.11728 * 9 8 6 11 11 C 1.54909 * 111.00474 * 267.19509 * 9 8 6 12 12 N 1.47424 * 104.83100 * 204.91607 * 11 9 8 13 13 C 1.36943 * 125.64781 * 204.17055 * 12 11 9 14 14 H 1.08000 * 120.00013 * 354.83774 * 13 12 11 15 15 C 1.38810 * 119.99809 * 174.82848 * 13 12 11 16 16 N 1.31622 * 120.00397 * 7.07016 * 15 13 12 17 17 Si 1.86799 * 120.00021 * 187.06529 * 15 13 12 18 18 H 1.48504 * 109.46812 * 94.98768 * 17 15 13 19 19 H 1.48494 * 109.47279 * 214.98843 * 17 15 13 20 20 H 1.48504 * 109.47058 * 334.99270 * 17 15 13 21 21 C 1.47026 * 108.70610 * 24.13019 * 12 11 9 22 22 C 1.54321 * 107.26664 * 358.93933 * 21 12 11 23 23 H 1.09000 * 110.72492 * 96.17016 * 22 21 12 24 24 O 1.42900 * 110.71934 * 219.44633 * 22 21 12 25 25 C 1.42903 * 114.00040 * 263.52242 * 24 22 21 26 26 H 1.09000 * 109.47406 * 59.99702 * 1 2 3 27 27 H 1.08999 * 109.47015 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46545 * 299.99506 * 1 2 3 29 29 H 1.09009 * 109.46953 * 240.00293 * 2 1 3 30 30 H 1.09000 * 109.47406 * 120.00298 * 2 1 3 31 31 H 1.09006 * 109.46891 * 60.00275 * 4 3 2 32 32 H 1.09002 * 109.47372 * 300.00320 * 4 3 2 33 33 H 1.08998 * 109.47042 * 60.00106 * 5 4 3 34 34 H 1.08997 * 109.47319 * 299.99993 * 5 4 3 35 35 H 0.96994 * 120.00440 * 359.97438 * 8 6 5 36 36 H 1.08994 * 110.36951 * 323.75379 * 11 9 8 37 37 H 1.09001 * 110.36558 * 86.08132 * 11 9 8 38 38 H 0.96995 * 120.00601 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.88080 * 239.52039 * 21 12 11 40 40 H 1.08997 * 110.00987 * 118.42609 * 21 12 11 41 41 H 1.08997 * 109.47538 * 179.97438 * 25 24 22 42 42 H 1.09000 * 109.46875 * 300.00143 * 25 24 22 43 43 H 1.09005 * 109.46933 * 59.99377 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 6 5.3278 3.0572 -0.0024 7 8 6.0152 2.0581 -0.0023 8 7 5.9074 4.2741 -0.0026 9 6 7.3678 4.3897 0.0023 10 1 7.8259 3.5503 -0.5209 11 6 7.9107 4.5066 1.4484 12 7 9.2019 5.2047 1.3114 13 6 10.2452 5.1338 2.1957 14 1 10.1304 4.5944 3.1243 15 6 11.4504 5.7551 1.8983 16 7 11.5487 6.5267 0.8366 17 14 12.9328 5.4961 3.0051 18 1 13.7711 4.3978 2.4606 19 1 13.7317 6.7464 3.0631 20 1 12.4739 5.1379 4.3713 21 6 9.1845 5.9887 0.0678 22 6 7.8208 5.7411 -0.6107 23 1 7.1157 6.5337 -0.3602 24 8 7.9739 5.6277 -2.0270 25 6 7.7189 6.8408 -2.7381 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8333 0.9767 -0.8909 32 1 3.8341 0.9763 0.8891 33 1 3.4230 3.4221 0.8888 34 1 3.4224 3.4216 -0.8911 35 1 5.3576 5.0732 -0.0023 36 1 7.2271 5.0910 2.0642 37 1 8.0586 3.5164 1.8793 38 1 12.3907 6.9612 0.6290 39 1 9.9903 5.6604 -0.5887 40 1 9.2992 7.0488 0.2936 41 1 7.8567 6.6717 -3.8060 42 1 6.6950 7.1637 -2.5501 43 1 8.4110 7.6122 -2.4004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212018025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:02 Heat of formation + Delta-G solvation = -129.342960 kcal Electronic energy + Delta-G solvation = -23028.689342 eV Core-core repulsion = 19494.957349 eV Total energy + Delta-G solvation = -3533.731993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.14847 -39.75909 -38.83015 -37.50915 -35.62145 -33.85751 -33.29375 -31.30943 -30.41454 -28.81861 -27.51894 -26.22621 -24.60443 -23.65765 -22.30550 -22.01681 -21.28945 -19.15259 -18.50249 -17.83641 -17.42075 -17.31529 -16.93840 -16.56939 -16.16347 -15.82889 -15.75864 -15.35684 -15.06005 -14.89973 -14.71603 -14.35688 -14.02213 -13.62958 -13.27362 -13.19538 -13.02580 -12.89586 -12.79682 -12.70794 -12.54482 -12.31285 -12.06767 -12.01083 -11.99255 -11.88977 -11.63558 -11.05329 -10.76921 -10.61609 -10.56486 -10.08803 -8.97508 -7.90120 -5.26814 1.44455 1.47732 1.55901 1.59926 1.89823 2.45184 2.75324 2.86431 3.29883 3.53035 3.69833 3.84819 3.92422 4.03496 4.07616 4.16858 4.19546 4.36968 4.41511 4.45646 4.50997 4.54393 4.60294 4.65258 4.76925 4.82374 4.85124 4.88069 4.94607 5.00701 5.06273 5.29791 5.31610 5.37556 5.47410 5.64990 6.12539 6.19640 6.31983 6.53054 7.03281 7.23727 7.68666 8.31451 9.19978 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.003282 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.825713 B = 8529.965547 C = 9561.445561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 O -0.402 6.402 4 C 0.079 3.921 5 C -0.124 4.124 6 C 0.517 3.483 7 O -0.587 6.587 8 N -0.699 5.699 9 C 0.149 3.851 10 H 0.074 0.926 11 C 0.131 3.869 12 N -0.623 5.623 13 C -0.247 4.247 14 H 0.084 0.916 15 C -0.062 4.062 16 N -0.947 5.947 17 Si 0.979 3.021 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.266 1.266 21 C 0.173 3.827 22 C 0.076 3.924 23 H 0.100 0.900 24 O -0.398 6.398 25 C 0.026 3.974 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.419 0.581 36 H 0.045 0.955 37 H 0.035 0.965 38 H 0.249 0.751 39 H 0.017 0.983 40 H 0.021 0.979 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.849 -4.414 -4.444 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 O -0.322 6.322 4 C 0.002 3.998 5 C -0.164 4.164 6 C 0.305 3.695 7 O -0.467 6.467 8 N -0.351 5.351 9 C 0.042 3.958 10 H 0.092 0.908 11 C 0.004 3.996 12 N -0.350 5.350 13 C -0.376 4.376 14 H 0.102 0.898 15 C -0.255 4.255 16 N -0.596 5.596 17 Si 0.807 3.193 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.190 1.190 21 C 0.047 3.953 22 C 0.017 3.983 23 H 0.117 0.883 24 O -0.317 6.317 25 C -0.070 4.070 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.257 0.743 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.036 0.964 40 H 0.039 0.961 41 H 0.118 0.882 42 H 0.085 0.915 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -21.257 -5.047 -4.525 22.312 hybrid contribution 1.382 0.352 0.527 1.520 sum -19.876 -4.695 -3.998 20.810 Atomic orbital electron populations 1.21756 0.92285 1.03427 1.02964 1.22681 0.96650 0.82799 1.00718 1.87770 1.20746 1.28086 1.95619 1.22031 0.80785 0.96072 1.00921 1.21404 0.89106 0.97925 1.07929 1.21062 0.91427 0.82592 0.74435 1.90722 1.66704 1.37921 1.51377 1.45661 1.05842 1.09073 1.74568 1.21830 0.80836 0.97483 0.95681 0.90782 1.21948 0.87335 0.95662 0.94654 1.44530 1.13142 1.53731 1.23642 1.19445 0.90372 1.28859 0.98918 0.89846 1.25698 1.00504 0.99551 0.99776 1.70162 1.25329 1.34588 1.29479 0.85050 0.79087 0.76723 0.78415 1.21668 1.21708 1.19037 1.21301 0.92994 0.94207 0.86787 1.23505 0.97049 0.96525 0.81216 0.88278 1.87898 1.91177 1.35032 1.17589 1.22995 1.00480 0.86050 0.97458 0.91926 0.89302 0.91995 0.92916 0.92991 0.93385 0.93443 0.85583 0.85551 0.74341 0.93713 0.94642 0.94168 0.96443 0.96109 0.88233 0.91521 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 71.98 0.74 -0.98 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.40 -8.11 10.34 -148.98 -1.54 -9.65 16 4 C 0.08 1.68 5.23 71.98 0.38 2.06 16 5 C -0.12 -2.24 6.07 29.85 0.18 -2.06 16 6 C 0.52 14.18 7.83 87.66 0.69 14.87 16 7 O -0.59 -22.10 15.62 -3.02 -0.05 -22.14 16 8 N -0.70 -18.37 5.20 -435.95 -2.27 -20.64 16 9 C 0.15 5.49 3.15 46.38 0.15 5.64 16 10 H 0.07 3.28 7.54 -2.39 -0.02 3.26 16 11 C 0.13 5.56 6.93 86.86 0.60 6.16 16 12 N -0.62 -32.86 3.39 -692.00 -2.35 -35.21 16 13 C -0.25 -14.19 10.27 84.03 0.86 -13.33 16 14 H 0.08 4.59 7.84 -2.91 -0.02 4.57 16 15 C -0.06 -3.58 5.48 84.86 0.46 -3.11 16 16 N -0.95 -57.49 10.36 21.65 0.22 -57.26 16 17 Si 0.98 46.44 29.56 68.60 2.03 48.47 16 18 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 19 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 C 0.17 8.66 5.16 86.73 0.45 9.10 16 22 C 0.08 2.81 3.09 31.78 0.10 2.91 16 23 H 0.10 2.94 7.69 -2.39 -0.02 2.92 16 24 O -0.40 -14.31 10.43 -148.98 -1.55 -15.86 16 25 C 0.03 0.67 10.85 113.37 1.23 1.90 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 1.11 8.10 -2.38 -0.02 1.09 16 32 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 33 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.42 7.53 8.57 -92.71 -0.79 6.74 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.02 1.02 7.21 -2.39 -0.02 1.00 16 40 H 0.02 1.13 7.61 -2.39 -0.02 1.11 16 41 H 0.10 2.16 8.14 -2.39 -0.02 2.15 16 42 H 0.07 1.30 8.11 -2.39 -0.02 1.28 16 43 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -75.66 355.85 1.00 -74.66 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.19 Total: 13.24 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: 6.31 Total: 24.39 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -4.39 Total: -113.10 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -3.14 Total: -47.65 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -75.66 1.00 -74.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212018025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.681 kcal (2) G-P(sol) polarization free energy of solvation -75.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds