Wall clock time and date at job start Tue Mar 31 2020 02:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99700 * 2 1 4 4 C 1.53005 * 109.47008 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47325 * 65.00064 * 4 3 2 6 6 C 1.42897 * 114.00102 * 179.97438 * 5 4 3 7 7 C 1.50692 * 109.47056 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00357 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00313 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99822 * 354.98330 * 9 7 6 11 11 C 1.46505 * 120.00486 * 174.98294 * 9 7 6 12 12 C 1.53004 * 109.46861 * 275.14383 * 11 9 7 13 13 H 1.09003 * 112.73536 * 44.02400 * 12 11 9 14 14 C 1.53493 * 113.51947 * 273.22775 * 12 11 9 15 15 C 1.53758 * 83.25671 * 218.97372 * 14 12 11 16 16 N 1.47059 * 113.46314 * 174.76579 * 12 11 9 17 17 C 1.36942 * 136.06138 * 321.92165 * 16 12 11 18 18 H 1.07999 * 119.99318 * 355.14402 * 17 16 12 19 19 C 1.38804 * 119.99865 * 174.86605 * 17 16 12 20 20 N 1.31619 * 120.00408 * 0.28244 * 19 17 16 21 21 Si 1.86804 * 119.99785 * 180.27375 * 19 17 16 22 22 H 1.48504 * 109.47041 * 60.00638 * 21 19 17 23 23 H 1.48502 * 109.47088 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47512 * 300.00622 * 21 19 17 25 25 H 1.09005 * 109.46738 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46997 * 299.99365 * 1 2 3 27 27 H 1.09000 * 109.47542 * 60.00211 * 1 2 3 28 28 H 1.08998 * 109.47109 * 60.00529 * 3 2 1 29 29 H 1.08995 * 109.47363 * 300.00281 * 3 2 1 30 30 H 1.08997 * 109.46920 * 304.99811 * 4 3 2 31 31 H 1.09001 * 109.47125 * 185.00147 * 4 3 2 32 32 H 1.09005 * 109.46632 * 60.00339 * 6 5 4 33 33 H 1.08998 * 109.47257 * 300.00627 * 6 5 4 34 34 H 1.09003 * 109.46860 * 270.00256 * 10 9 7 35 35 H 1.09001 * 109.46610 * 29.99642 * 10 9 7 36 36 H 1.08994 * 109.46947 * 149.99822 * 10 9 7 37 37 H 1.08996 * 109.47035 * 155.14315 * 11 9 7 38 38 H 1.08998 * 109.46788 * 35.14173 * 11 9 7 39 39 H 1.08995 * 114.20963 * 332.73481 * 14 12 11 40 40 H 1.08999 * 114.20401 * 105.36297 * 14 12 11 41 41 H 1.08991 * 113.47040 * 271.50503 * 15 14 12 42 42 H 1.09003 * 113.55062 * 140.98544 * 15 14 12 43 43 H 0.97000 * 120.00478 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5798 -1.2220 6 6 5.3812 0.4203 -1.3250 7 6 5.7194 -0.2241 -2.6446 8 8 4.8347 -0.5175 -3.4206 9 7 7.0050 -0.4744 -2.9625 10 6 8.0802 -0.0216 -2.0763 11 6 7.3273 -1.1993 -4.1941 12 6 7.2481 -2.7052 -3.9352 13 1 6.3691 -2.9873 -3.3555 14 6 8.5544 -3.3034 -3.3952 15 6 8.1876 -4.4759 -4.3198 16 7 7.4369 -3.5182 -5.1460 17 6 7.0700 -3.4270 -6.4622 18 1 6.4269 -2.6233 -6.7889 19 6 7.5294 -4.3642 -7.3772 20 7 8.3132 -5.3437 -6.9789 21 14 7.0351 -4.2353 -9.1741 22 1 7.5027 -2.9377 -9.7242 23 1 7.6526 -5.3488 -9.9384 24 1 5.5568 -4.3173 -9.2880 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 3.8514 0.5683 0.8409 31 1 3.9785 2.1766 0.0889 32 1 5.7358 -0.2118 -0.5109 33 1 5.8622 1.3965 -1.2630 34 1 8.3936 0.9808 -2.3681 35 1 7.7202 -0.0047 -1.0476 36 1 8.9266 -0.7040 -2.1539 37 1 8.3355 -0.9385 -4.5159 38 1 6.6153 -0.9266 -4.9731 39 1 9.4512 -2.7596 -3.6918 40 1 8.5292 -3.5460 -2.3328 41 1 7.5564 -5.2248 -3.8417 42 1 9.0455 -4.9116 -4.8319 43 1 8.6345 -5.9984 -7.6185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231303842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:08 Heat of formation + Delta-G solvation = -53.941903 kcal Electronic energy + Delta-G solvation = -23034.622733 eV Core-core repulsion = 19504.160375 eV Total energy + Delta-G solvation = -3530.462358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.84062 -38.52494 -37.89487 -37.00994 -35.11385 -32.11998 -30.97118 -29.20546 -27.84109 -27.32910 -26.43077 -25.65523 -23.37495 -22.80378 -22.13531 -19.31991 -18.95328 -17.41300 -17.07149 -16.88130 -16.56029 -15.99384 -15.93910 -15.28309 -15.20932 -14.91227 -14.50045 -14.03558 -13.56159 -13.52134 -13.09386 -12.68757 -12.62264 -12.55915 -12.38438 -12.16906 -11.78229 -11.60975 -11.45997 -11.28948 -11.02778 -10.77936 -10.68459 -10.38804 -9.92631 -9.85529 -9.78731 -9.72348 -9.59663 -9.32383 -8.69777 -8.22757 -6.78565 -5.67285 -3.00674 2.80034 2.86935 3.47044 3.50589 3.52448 3.54054 3.77810 4.53997 4.59398 4.76440 4.89630 4.92812 5.00119 5.06860 5.10379 5.16803 5.17140 5.23889 5.29016 5.38610 5.45249 5.50111 5.54584 5.58900 5.69895 5.85059 6.05291 6.23350 6.36530 6.51438 6.57549 6.75753 6.84506 6.93412 6.99961 7.31827 7.51017 7.61328 7.66919 8.08587 8.44466 9.13490 9.79763 10.73633 11.49359 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.003425 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.661545 B = 8173.993268 C = 8939.029081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.354 6.354 6 C 0.047 3.953 7 C 0.508 3.492 8 O -0.510 6.510 9 N -0.612 5.612 10 C 0.077 3.923 11 C 0.119 3.881 12 C 0.133 3.867 13 H 0.043 0.957 14 C -0.166 4.166 15 C 0.148 3.852 16 N -0.600 5.600 17 C -0.214 4.214 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.285 1.285 25 H 0.087 0.913 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.020 0.980 42 H 0.077 0.923 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 15.445 18.657 24.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.272 6.272 6 C -0.033 4.033 7 C 0.294 3.706 8 O -0.384 6.384 9 N -0.348 5.348 10 C -0.066 4.066 11 C -0.004 4.004 12 C 0.025 3.975 13 H 0.061 0.939 14 C -0.204 4.204 15 C 0.022 3.978 16 N -0.326 5.326 17 C -0.341 4.341 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.212 1.212 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.038 0.962 42 H 0.095 0.905 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.259 14.945 17.700 23.755 hybrid contribution -0.323 0.269 -0.612 0.743 sum -5.583 15.214 17.088 23.550 Atomic orbital electron populations 1.22748 0.81055 1.02994 0.99712 1.88000 1.19613 1.27034 1.95325 1.22532 0.92209 0.85765 1.00836 1.22578 0.93748 0.97453 0.87772 1.88111 1.19727 1.81959 1.37423 1.22264 0.83836 1.00463 0.96742 1.20145 0.82778 0.79723 0.87948 1.90770 1.46361 1.50704 1.50567 1.47841 1.05172 1.57163 1.24655 1.21822 0.91312 1.00028 0.93470 1.21879 1.01376 0.92414 0.84748 1.22431 0.95300 0.90254 0.89495 0.93921 1.23765 0.97663 1.01286 0.97733 1.22142 0.95767 0.91130 0.88714 1.45665 1.63580 1.21353 1.01955 1.18906 1.24447 1.09989 0.80803 0.90274 1.24771 1.00024 0.97642 0.97986 1.69816 1.37665 1.16076 1.33326 0.86198 0.78040 0.76981 0.84568 1.21059 1.21621 1.21158 0.89497 0.94338 0.93935 0.91817 0.92241 0.92242 0.91687 0.90353 0.90712 0.92735 0.91625 0.90343 0.90146 0.90128 0.90559 0.92954 0.96193 0.90483 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.76 10.67 -40.08 -0.43 -5.19 16 3 C 0.06 0.60 6.32 37.16 0.23 0.83 16 4 C 0.06 0.58 6.32 37.16 0.23 0.82 16 5 O -0.35 -5.11 9.84 -59.73 -0.59 -5.69 16 6 C 0.05 0.56 4.87 36.00 0.18 0.74 16 7 C 0.51 8.59 7.71 -10.99 -0.08 8.50 16 8 O -0.51 -11.50 16.13 -14.35 -0.23 -11.73 16 9 N -0.61 -9.28 2.88 -181.56 -0.52 -9.80 16 10 C 0.08 0.75 10.24 59.85 0.61 1.36 16 11 C 0.12 2.25 5.34 -4.04 -0.02 2.23 16 12 C 0.13 2.91 4.27 -72.41 -0.31 2.60 16 13 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 14 C -0.17 -3.18 8.03 -26.08 -0.21 -3.39 16 15 C 0.15 3.63 7.54 -8.37 -0.06 3.57 16 16 N -0.60 -16.10 3.64 -176.85 -0.64 -16.74 16 17 C -0.21 -6.28 10.55 -15.06 -0.16 -6.44 16 18 H 0.08 2.28 7.83 -52.49 -0.41 1.87 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -28.14 11.42 55.49 0.63 -27.51 16 21 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.76 7.58 -51.93 -0.39 0.36 16 33 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.47 6.44 -51.93 -0.33 0.13 16 36 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 37 H 0.08 1.42 7.77 -51.93 -0.40 1.02 16 38 H 0.08 1.79 7.51 -51.93 -0.39 1.40 16 39 H 0.08 1.38 7.94 -51.93 -0.41 0.97 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 2.06 6.91 -51.93 -0.36 1.70 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -37.85 359.14 -7.29 -45.14 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -7.33 Total: -3.81 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 1.43 Total: 11.88 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.53 Total: -54.05 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -1.25 Total: -22.61 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.85 -7.29 -45.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231303842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.801 kcal (2) G-P(sol) polarization free energy of solvation -37.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds