Wall clock time and date at job start Tue Mar 31 2020 03:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46893 * 2 1 4 4 N 1.46899 * 109.46697 * 119.99944 * 2 1 3 5 5 C 1.46896 * 111.00210 * 274.99615 * 4 2 1 6 6 C 1.52999 * 109.47329 * 180.02562 * 5 4 2 7 7 H 1.08992 * 109.47228 * 305.00347 * 6 5 4 8 8 O 1.42902 * 109.46879 * 65.00416 * 6 5 4 9 9 C 1.53002 * 109.47098 * 185.00199 * 6 5 4 10 10 N 1.46902 * 109.46834 * 178.51225 * 9 6 5 11 11 C 1.46905 * 110.99847 * 164.01331 * 10 9 6 12 12 C 1.46900 * 111.00266 * 287.96121 * 10 9 6 13 13 C 1.50702 * 109.47168 * 169.99965 * 12 10 9 14 14 H 1.07993 * 119.99737 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99536 * 180.02562 * 13 12 10 16 16 N 1.31508 * 120.00141 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99626 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47196 * 89.99906 * 17 15 13 19 19 H 1.48497 * 109.47406 * 210.00229 * 17 15 13 20 20 H 1.48501 * 109.47310 * 330.00275 * 17 15 13 21 21 C 1.52995 * 109.47028 * 239.99914 * 2 1 3 22 22 C 1.53001 * 115.55335 * 274.32995 * 21 2 1 23 23 O 1.42898 * 109.47384 * 180.02562 * 22 21 2 24 24 C 1.52999 * 117.49803 * 128.62256 * 21 2 1 25 25 C 1.53000 * 117.49911 * 60.00035 * 21 2 1 26 26 H 1.09007 * 109.47565 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47222 * 300.00075 * 1 2 3 28 28 H 1.09002 * 109.47316 * 59.99994 * 1 2 3 29 29 H 1.00903 * 111.00054 * 151.05056 * 4 2 1 30 30 H 1.09000 * 109.47457 * 300.00807 * 5 4 2 31 31 H 1.09000 * 109.46730 * 60.00336 * 5 4 2 32 32 H 0.96707 * 114.00133 * 60.00191 * 8 6 5 33 33 H 1.08999 * 109.47556 * 298.51123 * 9 6 5 34 34 H 1.08995 * 109.47136 * 58.51577 * 9 6 5 35 35 H 1.08998 * 109.47417 * 65.48122 * 11 10 9 36 36 H 1.09002 * 109.46992 * 185.48499 * 11 10 9 37 37 H 1.09007 * 109.46856 * 305.48427 * 11 10 9 38 38 H 1.08997 * 109.47095 * 290.00667 * 12 10 9 39 39 H 1.09006 * 109.46522 * 50.00466 * 12 10 9 40 40 H 0.96999 * 119.99984 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.46876 * 300.00422 * 22 21 2 42 42 H 1.08998 * 109.46922 * 59.99979 * 22 21 2 43 43 H 0.96697 * 113.99836 * 179.97438 * 23 22 21 44 44 H 1.09005 * 117.49667 * 0.02562 * 24 21 2 45 45 H 1.09000 * 117.50246 * 145.02026 * 24 21 2 46 46 H 1.08995 * 117.50235 * 214.97410 * 25 21 2 47 47 H 1.08997 * 117.49738 * 0.02562 * 25 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0195 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5960 -0.5329 3.5742 7 1 1.9708 -1.4082 3.7501 8 8 3.9445 -0.9484 3.3478 9 6 2.5438 0.3852 4.7970 10 7 3.0034 -0.3511 5.9821 11 6 3.3290 0.5690 7.0801 12 6 2.0061 -1.3433 6.4051 13 6 2.6045 -2.2396 7.4585 14 1 3.6236 -2.0871 7.7817 15 6 1.8508 -3.2542 8.0095 16 7 0.6100 -3.4401 7.6155 17 14 2.5924 -4.3648 9.3157 18 1 2.3412 -3.7848 10.6594 19 1 1.9697 -5.7104 9.2331 20 1 4.0559 -4.4821 9.0930 21 6 2.0399 -0.7212 -1.2492 22 6 2.1617 -2.2417 -1.1299 23 8 2.6466 -2.7789 -2.3621 24 6 3.0741 0.0052 -2.1116 25 6 1.6356 -0.1495 -2.6096 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.9172 -1.1205 1.0288 30 1 2.7587 1.0462 2.1182 31 1 1.0870 0.6163 2.5525 32 1 4.5584 -0.2195 3.1838 33 1 3.1898 1.2475 4.6319 34 1 1.5196 0.7233 4.9540 35 1 2.4216 1.0730 7.4130 36 1 3.7579 0.0072 7.9099 37 1 4.0491 1.3096 6.7320 38 1 1.1356 -0.8313 6.8153 39 1 1.7037 -1.9431 5.5467 40 1 0.0799 -4.1541 8.0029 41 1 2.8569 -2.4887 -0.3276 42 1 1.1836 -2.6681 -0.9072 43 1 2.7490 -3.7405 -2.3587 44 1 3.3914 0.9967 -1.7888 45 1 3.8415 -0.6001 -2.5941 46 1 1.4568 -0.8565 -3.4196 47 1 1.0067 0.7407 -2.6145 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336835106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:39 Heat of formation + Delta-G solvation = -99.507300 kcal Electronic energy + Delta-G solvation = -23526.722983 eV Core-core repulsion = 20130.117856 eV Total energy + Delta-G solvation = -3396.605127 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.37633 -39.35823 -37.43612 -36.75101 -35.43581 -34.59923 -31.87045 -30.09341 -29.24337 -28.19982 -26.78856 -25.31490 -23.71806 -23.13490 -22.60694 -21.70561 -19.69173 -18.64189 -18.50900 -17.38759 -17.30540 -16.80414 -16.51938 -16.16212 -15.78242 -15.65860 -15.38790 -15.28839 -14.90614 -14.59399 -14.26162 -13.96628 -13.81171 -13.49240 -13.21294 -13.08831 -12.92337 -12.74486 -12.68822 -12.59381 -12.51106 -12.30488 -12.20328 -12.14761 -11.61877 -11.49872 -11.45515 -11.30688 -11.16085 -10.73912 -10.59683 -10.35871 -9.36116 -8.94991 -8.19375 -6.28842 1.40140 1.42297 1.53969 2.41023 2.74364 2.94176 3.13119 3.25770 3.44266 3.70880 3.73525 3.89589 3.99578 4.04618 4.18292 4.31548 4.32687 4.40719 4.44635 4.52404 4.58856 4.62445 4.74928 4.78114 4.79656 4.80832 4.84258 4.87858 4.99974 5.07781 5.08456 5.13744 5.16803 5.27390 5.32419 5.32847 5.39799 5.65685 6.06765 6.11277 6.35479 6.44099 6.65773 6.87017 6.87229 7.05330 7.40426 8.91843 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.003248 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.161574 B = 8619.607485 C = 9176.685985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.130 3.870 3 H 0.055 0.945 4 N -0.690 5.690 5 C 0.044 3.956 6 C 0.125 3.875 7 H 0.064 0.936 8 O -0.559 6.559 9 C 0.027 3.973 10 N -0.542 5.542 11 C 0.041 3.959 12 C 0.210 3.790 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.266 1.266 21 C -0.140 4.140 22 C 0.120 3.880 23 O -0.586 6.586 24 C -0.164 4.164 25 C -0.152 4.152 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.348 0.652 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.379 0.621 33 H 0.097 0.903 34 H 0.026 0.974 35 H 0.007 0.993 36 H 0.054 0.946 37 H 0.083 0.917 38 H -0.043 1.043 39 H 0.005 0.995 40 H 0.264 0.736 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.396 0.604 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.452 9.616 -19.050 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.021 3.979 3 H 0.073 0.927 4 N -0.324 5.324 5 C -0.086 4.086 6 C 0.065 3.935 7 H 0.082 0.918 8 O -0.365 6.365 9 C -0.102 4.102 10 N -0.266 5.266 11 C -0.107 4.107 12 C 0.084 3.916 13 C -0.561 4.561 14 H 0.079 0.921 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.190 1.190 21 C -0.141 4.141 22 C 0.042 3.958 23 O -0.395 6.395 24 C -0.201 4.201 25 C -0.189 4.189 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.168 0.832 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.226 0.774 33 H 0.115 0.885 34 H 0.045 0.955 35 H 0.026 0.974 36 H 0.073 0.927 37 H 0.102 0.898 38 H -0.025 1.025 39 H 0.023 0.977 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.246 0.754 44 H 0.117 0.883 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.850 9.049 -19.053 21.284 hybrid contribution 0.021 0.034 0.996 0.997 sum 2.871 9.082 -18.057 20.415 Atomic orbital electron populations 1.21789 0.94181 1.01963 1.01609 1.20979 0.95788 0.94853 0.86300 0.92726 1.60465 1.34382 1.33331 1.04197 1.22514 1.01559 0.93903 0.90588 1.21699 0.83481 0.96731 0.91572 0.91787 1.86650 1.18455 1.37657 1.93718 1.22790 0.98876 0.96736 0.91840 1.61952 1.43719 1.15258 1.05665 1.22221 0.98945 0.95059 0.94481 1.19377 0.88149 0.89944 0.94158 1.21479 0.99027 1.14466 1.21144 0.92137 1.25921 0.95248 0.99094 0.99533 1.70086 1.09630 1.33142 1.44686 0.85391 0.78728 0.77730 0.78828 1.19655 1.20710 1.19035 1.21582 1.06179 0.93592 0.92709 1.21290 0.97763 0.91368 0.85395 1.86333 1.88897 1.28108 1.36124 1.23045 0.92947 1.01095 1.02979 1.22920 0.97790 1.02574 0.95613 0.93139 0.93065 0.91035 0.83220 0.92755 0.90421 0.77351 0.88478 0.95547 0.97413 0.92715 0.89849 1.02525 0.97713 0.92746 0.93259 0.93464 0.75391 0.88270 0.88987 0.88806 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.25 71.98 0.67 -2.03 16 2 C 0.13 2.54 2.71 44.91 0.12 2.67 16 3 H 0.05 0.98 7.56 -2.39 -0.02 0.97 16 4 N -0.69 -16.41 5.77 -491.60 -2.84 -19.24 16 5 C 0.04 1.06 5.16 86.30 0.44 1.51 16 6 C 0.13 4.06 3.23 30.59 0.10 4.16 16 7 H 0.06 2.72 6.55 -2.39 -0.02 2.70 16 8 O -0.56 -17.95 12.75 -148.98 -1.90 -19.85 16 9 C 0.03 0.89 4.63 86.30 0.40 1.29 16 10 N -0.54 -23.54 4.60 -927.01 -4.27 -27.81 16 11 C 0.04 1.57 9.32 127.69 1.19 2.76 16 12 C 0.21 11.53 4.57 85.56 0.39 11.92 16 13 C -0.52 -30.66 8.54 25.60 0.22 -30.44 16 14 H 0.06 3.49 7.10 -2.91 -0.02 3.47 16 15 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 16 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 17 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 C -0.14 -2.65 1.81 -52.18 -0.09 -2.74 16 22 C 0.12 2.43 6.61 71.98 0.48 2.91 16 23 O -0.59 -10.88 11.92 -148.98 -1.78 -12.66 16 24 C -0.16 -2.85 9.58 30.59 0.29 -2.56 16 25 C -0.15 -2.57 9.14 30.59 0.28 -2.29 16 26 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.05 1.04 7.45 -2.39 -0.02 1.02 16 28 H 0.07 1.14 7.29 -2.39 -0.02 1.13 16 29 H 0.35 8.46 6.54 -89.69 -0.59 7.87 16 30 H 0.05 1.04 8.06 -2.39 -0.02 1.02 16 31 H 0.08 1.88 7.44 -2.39 -0.02 1.87 16 32 H 0.38 8.55 9.05 -74.05 -0.67 7.88 16 33 H 0.10 2.53 7.88 -2.39 -0.02 2.51 16 34 H 0.03 0.92 8.05 -2.39 -0.02 0.90 16 35 H 0.01 0.28 8.13 -2.39 -0.02 0.26 16 36 H 0.05 2.27 6.90 -2.39 -0.02 2.25 16 37 H 0.08 2.48 7.97 -2.38 -0.02 2.46 16 38 H -0.04 -2.55 8.11 -2.39 -0.02 -2.57 16 39 H 0.00 0.29 6.38 -2.38 -0.02 0.27 16 40 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.05 1.07 6.77 -2.39 -0.02 1.05 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.40 4.29 9.12 -74.06 -0.68 3.61 16 44 H 0.10 1.50 8.05 -2.38 -0.02 1.48 16 45 H 0.09 1.76 7.66 -2.39 -0.02 1.74 16 46 H 0.09 1.73 7.66 -2.39 -0.02 1.71 16 47 H 0.10 1.47 7.61 -2.39 -0.02 1.45 16 Total: -1.00 -70.81 371.09 -4.48 -75.29 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.96 Total: 26.61 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 4.95 Total: -12.42 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -6.82 Total: -104.47 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -3.67 Total: -32.50 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -70.81 -4.48 -75.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336835106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.218 kcal (2) G-P(sol) polarization free energy of solvation -70.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds