Wall clock time and date at job start Tue Mar 31 2020 03:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99745 * 2 1 4 4 H 1.48502 * 109.47026 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47024 * 300.00170 * 3 2 1 6 6 H 1.48496 * 109.47161 * 60.00274 * 3 2 1 7 7 C 1.37878 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99845 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99923 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47052 * 179.97438 * 9 7 2 11 11 C 1.46894 * 110.99918 * 169.99984 * 10 9 7 12 12 C 1.53240 * 109.34223 * 187.25772 * 11 10 9 13 13 N 1.47077 * 108.52107 * 306.17232 * 12 11 10 14 14 C 1.34774 * 120.88564 * 231.18304 * 13 12 11 15 15 O 1.21585 * 120.00543 * 184.99260 * 14 13 12 16 16 N 1.34774 * 119.99512 * 5.00095 * 14 13 12 17 17 C 1.46502 * 119.99800 * 174.91709 * 16 14 13 18 18 C 1.53003 * 109.47143 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.47165 * 180.02562 * 18 17 16 20 20 O 1.42905 * 109.46770 * 180.02562 * 19 18 17 21 21 N 1.46301 * 113.99415 * 179.97438 * 20 19 18 22 22 C 1.47089 * 118.23614 * 51.45786 * 13 12 11 23 23 C 1.46892 * 111.00471 * 294.30748 * 10 9 7 24 24 H 0.96993 * 119.99943 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46798 * 60.00731 * 9 7 2 26 26 H 1.08994 * 109.47629 * 300.00740 * 9 7 2 27 27 H 1.09004 * 109.49237 * 67.29515 * 11 10 9 28 28 H 1.09000 * 109.49692 * 307.21964 * 11 10 9 29 29 H 1.08995 * 109.62987 * 186.46090 * 12 11 10 30 30 H 1.09002 * 109.62627 * 65.88484 * 12 11 10 31 31 H 0.97000 * 120.00657 * 354.91305 * 16 14 13 32 32 H 1.09002 * 109.47046 * 59.99610 * 17 16 14 33 33 H 1.08991 * 109.47403 * 299.99454 * 17 16 14 34 34 H 1.09005 * 109.47122 * 300.00286 * 18 17 16 35 35 H 1.09002 * 109.47038 * 60.00131 * 18 17 16 36 36 H 1.08998 * 109.46613 * 299.99786 * 19 18 17 37 37 H 1.08988 * 109.47236 * 60.00226 * 19 18 17 38 38 H 1.00898 * 111.00417 * 56.04559 * 21 20 19 39 39 H 1.00901 * 110.99343 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.62971 * 68.25122 * 22 13 12 41 41 H 1.08999 * 109.62599 * 188.83219 * 22 13 12 42 42 H 1.09003 * 109.49364 * 292.70760 * 23 10 9 43 43 H 1.09003 * 109.49666 * 52.78324 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0018 11 6 1.5216 -4.8935 0.2363 12 6 2.5643 -6.0033 0.4079 13 7 3.4613 -5.9858 -0.7575 14 6 3.7112 -7.1116 -1.4551 15 8 4.5244 -7.0989 -2.3589 16 7 3.0596 -8.2514 -1.1508 17 6 3.2475 -9.4458 -1.9782 18 6 2.4013 -10.5915 -1.4195 19 6 2.5980 -11.8390 -2.2832 20 8 1.8071 -12.9090 -1.7617 21 7 1.9212 -14.1563 -2.5176 22 6 4.0832 -4.7083 -1.1379 23 6 2.9760 -3.6485 -1.2521 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8895 27 1 0.8793 -5.1260 -0.6132 28 1 0.9170 -4.8196 1.1403 29 1 2.0638 -6.9695 0.4703 30 1 3.1405 -5.8270 1.3163 31 1 2.4663 -8.2811 -0.3840 32 1 4.2990 -9.7328 -1.9684 33 1 2.9390 -9.2312 -3.0013 34 1 2.7101 -10.8060 -0.3964 35 1 1.3497 -10.3047 -1.4290 36 1 2.2894 -11.6248 -3.3064 37 1 3.6495 -12.1257 -2.2733 38 1 2.8833 -14.4534 -2.5822 39 1 1.3463 -14.8792 -2.1112 40 1 4.8027 -4.4100 -0.3753 41 1 4.5874 -4.8181 -2.0980 42 1 2.3136 -3.8983 -2.0810 43 1 3.4264 -2.6715 -1.4277 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337030424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:37 Heat of formation + Delta-G solvation = -43.080511 kcal Electronic energy + Delta-G solvation = -22632.047014 eV Core-core repulsion = 19134.348393 eV Total energy + Delta-G solvation = -3497.698621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45901 -39.20003 -38.20603 -36.38965 -35.98350 -34.40795 -33.13346 -31.93683 -30.42964 -29.72463 -27.32556 -25.99171 -24.49728 -23.88568 -22.74471 -22.16609 -20.47468 -19.15455 -18.49859 -17.92621 -17.32686 -17.24819 -16.90144 -16.73461 -16.41437 -16.00013 -15.73421 -15.40445 -15.37091 -15.09729 -14.93382 -14.35649 -14.09385 -13.97639 -13.51617 -13.10426 -13.06691 -12.74118 -12.63173 -12.58127 -12.40922 -12.33476 -12.25734 -12.14647 -11.74675 -11.45068 -11.37586 -11.16890 -10.62126 -10.27863 -9.97920 -9.59873 -9.03643 -8.20606 -6.30169 1.42203 1.43111 1.47267 1.56463 1.91142 2.08449 2.41005 2.88397 3.11927 3.23805 3.81816 3.94170 3.95386 4.05441 4.14451 4.17560 4.26504 4.38604 4.44788 4.52342 4.57764 4.58333 4.69679 4.72794 4.85819 4.95619 5.02692 5.08529 5.09246 5.18131 5.23480 5.43794 5.46128 5.64661 5.91346 5.92456 6.04017 6.19503 6.26277 6.58879 6.85809 6.91320 7.39655 7.49034 8.90665 Molecular weight = 286.18amu Principal moments of inertia in cm(-1) A = 0.040301 B = 0.002548 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.612257 B =10986.586287 C =11407.947488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.522 4.522 8 H 0.066 0.934 9 C 0.208 3.792 10 N -0.538 5.538 11 C 0.037 3.963 12 C 0.127 3.873 13 N -0.629 5.629 14 C 0.705 3.295 15 O -0.634 6.634 16 N -0.735 5.735 17 C 0.145 3.855 18 C -0.115 4.115 19 C 0.066 3.934 20 O -0.267 6.267 21 N -0.676 5.676 22 C 0.146 3.854 23 C 0.057 3.943 24 H 0.264 0.736 25 H -0.042 1.042 26 H 0.012 0.988 27 H 0.018 0.982 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.409 0.591 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.352 0.648 39 H 0.376 0.624 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.009 0.991 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.348 -25.086 -0.304 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.084 0.916 9 C 0.082 3.918 10 N -0.263 5.263 11 C -0.092 4.092 12 C 0.004 3.996 13 N -0.366 5.366 14 C 0.406 3.594 15 O -0.516 6.516 16 N -0.394 5.394 17 C 0.021 3.979 18 C -0.154 4.154 19 C -0.012 4.012 20 O -0.280 6.280 21 N -0.247 5.247 22 C 0.022 3.978 23 C -0.073 4.073 24 H 0.073 0.927 25 H -0.024 1.024 26 H 0.030 0.970 27 H 0.037 0.963 28 H 0.108 0.892 29 H 0.128 0.872 30 H 0.106 0.894 31 H 0.248 0.752 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.163 0.837 39 H 0.191 0.809 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.028 0.972 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.657 -24.505 -1.017 25.170 hybrid contribution -0.427 0.573 0.258 0.760 sum 5.230 -23.932 -0.759 24.509 Atomic orbital electron populations 1.70085 1.07709 1.27815 1.51901 1.25908 0.95735 1.03204 0.94887 0.85338 0.79087 0.78646 0.77569 1.18573 1.20753 1.20429 1.21505 0.93761 0.90962 1.49788 0.91591 1.19383 0.90030 0.88821 0.93580 1.61992 1.27094 1.03099 1.34101 1.22537 0.95806 0.90018 1.00887 1.21861 0.90894 0.98711 0.88145 1.47423 1.49783 1.07466 1.31889 1.15947 0.81025 0.80940 0.81487 1.90864 1.39660 1.85364 1.35662 1.45086 1.50095 1.09873 1.34328 1.20993 1.00164 0.82807 0.93959 1.21516 1.01392 0.91860 1.00623 1.22298 0.95149 0.85973 0.97802 1.90611 1.68455 1.16983 1.51990 1.64403 1.15910 0.98724 1.45614 1.21590 0.94207 0.80414 1.01602 1.22374 0.95454 0.99498 0.89937 0.92732 1.02437 0.97023 0.96327 0.89191 0.87157 0.89380 0.75161 0.91566 0.92352 0.89343 0.89958 0.92432 0.91732 0.83660 0.80858 0.90238 0.89634 0.97241 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.52 -29.01 8.41 25.60 0.22 -28.79 16 8 H 0.07 3.58 7.13 -2.91 -0.02 3.56 16 9 C 0.21 10.84 4.72 85.56 0.40 11.24 16 10 N -0.54 -22.27 4.62 -898.90 -4.15 -26.42 16 11 C 0.04 1.18 5.62 86.38 0.49 1.66 16 12 C 0.13 3.00 6.59 86.35 0.57 3.57 16 13 N -0.63 -18.18 3.00 -835.04 -2.51 -20.69 16 14 C 0.70 20.67 8.31 179.06 1.49 22.16 16 15 O -0.63 -23.51 15.83 -3.98 -0.06 -23.57 16 16 N -0.73 -14.85 5.47 -478.54 -2.62 -17.46 16 17 C 0.15 2.48 5.68 86.38 0.49 2.97 16 18 C -0.11 -1.38 5.70 30.60 0.17 -1.20 16 19 C 0.07 0.85 6.39 71.98 0.46 1.31 16 20 O -0.27 -4.26 11.97 -50.16 -0.60 -4.86 16 21 N -0.68 -7.43 10.79 37.02 0.40 -7.03 16 22 C 0.15 4.73 6.61 86.50 0.57 5.31 16 23 C 0.06 2.21 5.47 86.54 0.47 2.68 16 24 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 25 H -0.04 -2.43 8.12 -2.38 -0.02 -2.45 16 26 H 0.01 0.65 7.97 -2.39 -0.02 0.63 16 27 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.09 2.73 7.99 -2.39 -0.02 2.71 16 29 H 0.11 1.71 5.63 -2.39 -0.01 1.70 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.41 5.97 5.97 -92.71 -0.55 5.42 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.35 2.28 9.18 -89.70 -0.82 1.45 16 39 H 0.38 2.62 9.25 -89.69 -0.83 1.79 16 40 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.09 2.86 7.09 -2.39 -0.02 2.84 16 42 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.08 3.37 6.67 -2.39 -0.02 3.35 16 Total: -1.00 -73.65 349.51 -2.61 -76.26 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -1.18 Total: 11.90 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 5.79 Total: 21.40 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -8.59 Total: -127.07 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.66 Total: -28.43 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -73.65 -2.61 -76.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337030424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.180 kcal (2) G-P(sol) polarization free energy of solvation -73.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds