Wall clock time and date at job start Tue Mar 31 2020 02:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00592 * 2 1 4 4 C 1.52995 * 109.47682 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.68434 * 177.99207 * 4 3 2 6 6 C 1.53296 * 109.68134 * 57.43651 * 4 3 2 7 7 O 1.42960 * 109.22592 * 187.97919 * 6 4 3 8 8 C 1.42958 * 114.16795 * 62.57622 * 7 6 4 9 9 C 1.53706 * 109.14970 * 297.29636 * 8 7 6 10 10 N 1.47151 * 108.16556 * 52.53636 * 9 8 7 11 11 C 1.34769 * 120.98468 * 129.43410 * 10 9 8 12 12 O 1.21277 * 120.00047 * 174.11387 * 11 10 9 13 13 C 1.50707 * 120.00137 * 354.10762 * 11 10 9 14 14 H 1.08996 * 109.46976 * 320.00701 * 13 11 10 15 15 N 1.46894 * 109.47204 * 200.00004 * 13 11 10 16 16 C 1.53003 * 109.46831 * 80.00240 * 13 11 10 17 17 C 1.52992 * 109.47033 * 185.00268 * 16 13 11 18 18 C 1.50702 * 109.47076 * 180.02562 * 17 16 13 19 19 H 1.07999 * 120.00207 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00242 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99749 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00449 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46935 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47315 * 119.99677 * 22 20 18 25 25 H 1.48506 * 109.47177 * 240.00404 * 22 20 18 26 26 H 1.09007 * 109.46625 * 300.00300 * 1 2 3 27 27 H 1.09005 * 109.46793 * 59.99459 * 1 2 3 28 28 H 1.08997 * 109.47455 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46820 * 59.99707 * 3 2 1 30 30 H 1.09010 * 109.46657 * 300.00088 * 3 2 1 31 31 H 1.09007 * 109.51582 * 307.90259 * 6 4 3 32 32 H 1.09003 * 109.51598 * 68.05253 * 6 4 3 33 33 H 1.09002 * 109.51149 * 57.35284 * 8 7 6 34 34 H 1.08997 * 109.51222 * 177.44436 * 8 7 6 35 35 H 1.09001 * 109.84018 * 292.84937 * 9 8 7 36 36 H 1.09005 * 109.74386 * 172.16510 * 9 8 7 37 37 H 1.00901 * 110.99720 * 176.04463 * 15 13 11 38 38 H 1.00894 * 111.00420 * 300.00473 * 15 13 11 39 39 H 1.09001 * 109.47027 * 65.00013 * 16 13 11 40 40 H 1.09004 * 109.46941 * 305.00271 * 16 13 11 41 41 H 1.09001 * 109.47422 * 59.99987 * 17 16 13 42 42 H 1.09004 * 109.47260 * 299.99808 * 17 16 13 43 43 H 0.97002 * 119.99744 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9825 2.1781 -0.0366 6 6 3.9883 0.3696 -1.2175 7 8 5.3890 0.1040 -1.1114 8 6 5.7506 -0.6859 0.0240 9 6 5.3893 0.0800 1.3068 10 7 3.9778 0.4859 1.2166 11 6 3.1168 0.2303 2.2214 12 8 1.9856 0.6652 2.1761 13 6 3.5596 -0.5961 3.4014 14 1 4.1822 -1.4206 3.0542 15 7 2.3803 -1.1309 4.0948 16 6 4.3638 0.2798 4.3642 17 6 4.9185 -0.5849 5.4979 18 6 5.7101 0.2779 6.4466 19 1 5.8080 1.3370 6.2595 20 6 6.3092 -0.2848 7.5536 21 7 6.1895 -1.5745 7.7818 22 14 7.2910 0.7845 8.7293 23 1 7.2739 2.1904 8.2512 24 1 6.6868 0.7145 10.0839 25 1 8.6931 0.2988 8.7867 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8464 -0.8901 31 1 3.4406 -0.5723 -1.2492 32 1 3.7931 0.9359 -2.1282 33 1 5.2093 -1.6316 -0.0032 34 1 6.8230 -0.8797 0.0060 35 1 6.0203 0.9639 1.4000 36 1 5.5310 -0.5658 2.1734 37 1 2.6515 -1.7410 4.8513 38 1 1.7868 -0.3855 4.4264 39 1 3.7164 1.0521 4.7797 40 1 5.1888 0.7476 3.8270 41 1 5.5659 -1.3572 5.0824 42 1 4.0935 -1.0527 6.0352 43 1 6.6113 -1.9704 8.5604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341391908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:09 Heat of formation + Delta-G solvation = -110.394958 kcal Electronic energy + Delta-G solvation = -24456.739811 eV Core-core repulsion = 20923.829466 eV Total energy + Delta-G solvation = -3532.910346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.65975 -38.30615 -37.44844 -35.49345 -34.65306 -32.92467 -32.18250 -29.90020 -28.62463 -26.87460 -26.37797 -25.45314 -23.96592 -22.90924 -21.64119 -20.27089 -18.91274 -17.51512 -16.74598 -16.59346 -16.30786 -15.53553 -15.41724 -15.36198 -15.29766 -14.75347 -14.52584 -14.31145 -14.19304 -13.63001 -13.35353 -13.14198 -12.65692 -12.57288 -12.14208 -12.07560 -11.81751 -11.57312 -11.46399 -11.14010 -11.01326 -10.89516 -10.83340 -10.64544 -10.22638 -10.00080 -9.79960 -9.53456 -9.25369 -8.72778 -8.46114 -8.37905 -8.09794 -6.10508 -4.13678 2.88729 3.02722 3.24760 3.33006 3.36743 3.69130 3.93265 4.37718 4.58932 4.66642 4.87425 4.99621 5.09148 5.14938 5.20304 5.25860 5.26880 5.31272 5.44631 5.47818 5.57524 5.58543 5.67726 5.73846 5.77796 5.84737 5.91642 5.94073 6.27041 6.48709 6.57062 6.84967 6.97373 7.31948 7.41280 7.49926 7.58439 7.65585 7.86636 7.91724 8.29171 8.52336 8.92532 9.51562 11.00361 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.004284 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.849193 B = 6535.036820 C = 7265.098016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.376 6.376 3 C 0.058 3.942 4 C 0.118 3.882 5 H 0.088 0.912 6 C 0.054 3.946 7 O -0.383 6.383 8 C 0.047 3.953 9 C 0.071 3.929 10 N -0.614 5.614 11 C 0.540 3.460 12 O -0.522 6.522 13 C 0.075 3.925 14 H 0.094 0.906 15 N -0.828 5.828 16 C -0.140 4.140 17 C 0.025 3.975 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.044 0.956 27 H 0.028 0.972 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.353 0.647 38 H 0.344 0.656 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.311 3.073 -17.270 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C -0.019 4.019 4 C 0.014 3.986 5 H 0.106 0.894 6 C -0.024 4.024 7 O -0.301 6.301 8 C -0.030 4.030 9 C -0.053 4.053 10 N -0.351 5.351 11 C 0.329 3.671 12 O -0.397 6.397 13 C -0.040 4.040 14 H 0.111 0.889 15 N -0.360 5.360 16 C -0.180 4.180 17 C -0.012 4.012 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.168 0.832 38 H 0.157 0.843 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.832 2.715 -17.989 19.104 hybrid contribution 0.752 1.151 1.760 2.233 sum -5.080 3.867 -16.229 17.440 Atomic orbital electron populations 1.22517 0.81408 1.01931 0.99253 1.87816 1.19412 1.26945 1.95269 1.22823 0.90840 0.87039 1.01176 1.21972 0.94568 0.96416 0.85609 0.89428 1.22983 0.82059 1.00238 0.97073 1.87926 1.23702 1.72674 1.45785 1.23091 1.01510 0.93472 0.84972 1.22629 0.81873 1.00896 0.99869 1.48016 1.09981 1.59702 1.17415 1.20697 0.84303 0.79401 0.82666 1.90497 1.19850 1.51408 1.77961 1.21491 0.92798 0.97045 0.92637 0.88865 1.58722 1.17788 1.24362 1.35093 1.22433 0.98720 0.99035 0.97762 1.19099 0.95840 0.94681 0.91616 1.21210 1.32064 0.94736 1.08127 0.92701 1.25006 0.96448 0.94970 0.97831 1.69960 1.44425 1.10501 1.28280 0.86540 0.79871 0.80697 0.80938 1.19766 1.20953 1.20920 0.93698 0.95382 0.90474 0.88598 0.94678 0.91456 0.88283 0.92366 0.87577 0.90318 0.87671 0.83207 0.84293 0.92737 0.92519 0.96396 0.96418 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.55 10.78 101.05 1.09 1.64 16 2 O -0.38 -5.46 7.86 -58.97 -0.46 -5.92 16 3 C 0.06 0.74 4.69 37.15 0.17 0.92 16 4 C 0.12 1.46 3.47 -67.42 -0.23 1.23 16 5 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 6 C 0.05 0.61 6.22 37.31 0.23 0.84 16 7 O -0.38 -4.64 10.74 -35.23 -0.38 -5.02 16 8 C 0.05 0.52 7.00 37.52 0.26 0.78 16 9 C 0.07 0.87 5.71 -3.32 -0.02 0.85 16 10 N -0.61 -8.68 3.00 -164.50 -0.49 -9.17 16 11 C 0.54 8.99 6.40 -10.99 -0.07 8.92 16 12 O -0.52 -9.41 10.96 -18.18 -0.20 -9.61 16 13 C 0.08 1.29 2.35 -68.86 -0.16 1.13 16 14 H 0.09 1.55 6.80 -51.93 -0.35 1.20 16 15 N -0.83 -14.29 8.94 -5.65 -0.05 -14.34 16 16 C -0.14 -2.71 4.49 -26.73 -0.12 -2.83 16 17 C 0.02 0.59 4.74 -27.89 -0.13 0.46 16 18 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 22 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.04 0.59 8.05 -51.92 -0.42 0.17 16 27 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.10 1.44 5.80 -52.27 -0.30 1.13 16 30 H 0.04 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.07 0.84 7.40 -51.93 -0.38 0.45 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.11 1.35 5.13 -51.93 -0.27 1.09 16 37 H 0.35 6.13 7.55 -39.29 -0.30 5.83 16 38 H 0.34 5.97 8.58 -39.30 -0.34 5.63 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.06 6.83 -51.93 -0.35 0.70 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 336.56 15.07 5.07 5.07 Total: -1.00 -30.99 336.56 -7.03 -38.02 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.84 Total: 8.96 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 0.61 Total: 0.98 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.19 Total: -48.55 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -1.04 Total: -20.55 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.99 -7.03 -38.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341391908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.378 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds