Wall clock time and date at job start Tue Mar 31 2020 02:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00592 * 2 1 4 4 C 1.52995 * 109.47682 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.68434 * 177.99207 * 4 3 2 6 6 C 1.53296 * 109.68134 * 57.43651 * 4 3 2 7 7 O 1.42960 * 109.22592 * 187.97919 * 6 4 3 8 8 C 1.42958 * 114.16795 * 62.57622 * 7 6 4 9 9 C 1.53706 * 109.14970 * 297.29636 * 8 7 6 10 10 N 1.47151 * 108.16556 * 52.53636 * 9 8 7 11 11 C 1.34769 * 120.98468 * 129.43410 * 10 9 8 12 12 O 1.21277 * 120.00047 * 174.11387 * 11 10 9 13 13 C 1.50707 * 120.00137 * 354.10762 * 11 10 9 14 14 H 1.08996 * 109.46976 * 320.00701 * 13 11 10 15 15 N 1.46894 * 109.47204 * 200.00004 * 13 11 10 16 16 C 1.53003 * 109.46831 * 80.00240 * 13 11 10 17 17 C 1.52992 * 109.47033 * 185.00268 * 16 13 11 18 18 C 1.50702 * 109.47076 * 180.02562 * 17 16 13 19 19 H 1.07999 * 120.00207 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00242 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99749 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00449 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46935 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47315 * 119.99677 * 22 20 18 25 25 H 1.48506 * 109.47177 * 240.00404 * 22 20 18 26 26 H 1.09007 * 109.46625 * 300.00300 * 1 2 3 27 27 H 1.09005 * 109.46793 * 59.99459 * 1 2 3 28 28 H 1.08997 * 109.47455 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46820 * 59.99707 * 3 2 1 30 30 H 1.09010 * 109.46657 * 300.00088 * 3 2 1 31 31 H 1.09007 * 109.51582 * 307.90259 * 6 4 3 32 32 H 1.09003 * 109.51598 * 68.05253 * 6 4 3 33 33 H 1.09002 * 109.51149 * 57.35284 * 8 7 6 34 34 H 1.08997 * 109.51222 * 177.44436 * 8 7 6 35 35 H 1.09001 * 109.84018 * 292.84937 * 9 8 7 36 36 H 1.09005 * 109.74386 * 172.16510 * 9 8 7 37 37 H 1.00901 * 110.99720 * 176.04463 * 15 13 11 38 38 H 1.00894 * 111.00420 * 300.00473 * 15 13 11 39 39 H 1.09001 * 109.47027 * 65.00013 * 16 13 11 40 40 H 1.09004 * 109.46941 * 305.00271 * 16 13 11 41 41 H 1.09001 * 109.47422 * 59.99987 * 17 16 13 42 42 H 1.09004 * 109.47260 * 299.99808 * 17 16 13 43 43 H 0.97002 * 119.99744 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9825 2.1781 -0.0366 6 6 3.9883 0.3696 -1.2175 7 8 5.3890 0.1040 -1.1114 8 6 5.7506 -0.6859 0.0240 9 6 5.3893 0.0800 1.3068 10 7 3.9778 0.4859 1.2166 11 6 3.1168 0.2303 2.2214 12 8 1.9856 0.6652 2.1761 13 6 3.5596 -0.5961 3.4014 14 1 4.1822 -1.4206 3.0542 15 7 2.3803 -1.1309 4.0948 16 6 4.3638 0.2798 4.3642 17 6 4.9185 -0.5849 5.4979 18 6 5.7101 0.2779 6.4466 19 1 5.8080 1.3370 6.2595 20 6 6.3092 -0.2848 7.5536 21 7 6.1895 -1.5745 7.7818 22 14 7.2910 0.7845 8.7293 23 1 7.2739 2.1904 8.2512 24 1 6.6868 0.7145 10.0839 25 1 8.6931 0.2988 8.7867 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8464 -0.8901 31 1 3.4406 -0.5723 -1.2492 32 1 3.7931 0.9359 -2.1282 33 1 5.2093 -1.6316 -0.0032 34 1 6.8230 -0.8797 0.0060 35 1 6.0203 0.9639 1.4000 36 1 5.5310 -0.5658 2.1734 37 1 2.6515 -1.7410 4.8513 38 1 1.7868 -0.3855 4.4264 39 1 3.7164 1.0521 4.7797 40 1 5.1888 0.7476 3.8270 41 1 5.5659 -1.3572 5.0824 42 1 4.0935 -1.0527 6.0352 43 1 6.6113 -1.9704 8.5604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341391908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:08 Heat of formation + Delta-G solvation = -132.781043 kcal Electronic energy + Delta-G solvation = -24457.710545 eV Core-core repulsion = 20923.829466 eV Total energy + Delta-G solvation = -3533.881079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79120 -39.40560 -38.50825 -37.01092 -35.74750 -34.86508 -33.19609 -31.68988 -29.68644 -28.14246 -27.67323 -26.45682 -25.64844 -23.87721 -23.00199 -21.79025 -20.13992 -18.82594 -18.26467 -17.80016 -17.54957 -16.66858 -16.59340 -16.37073 -16.35761 -16.29305 -15.90373 -15.58239 -15.42810 -14.85650 -14.75870 -14.61593 -14.17940 -13.75877 -13.51163 -13.40707 -13.13038 -12.92234 -12.75786 -12.50629 -12.42729 -12.39221 -12.02478 -11.85547 -11.78041 -11.56786 -11.28416 -11.17990 -10.68982 -10.56527 -9.98237 -9.52264 -9.44814 -8.21440 -6.31808 1.38708 1.40582 1.52044 1.66802 1.84490 2.39961 2.82478 2.98327 3.12421 3.47062 3.68185 3.74811 3.91747 4.05298 4.06240 4.13979 4.23097 4.27666 4.31854 4.41240 4.58041 4.59154 4.64674 4.65498 4.78611 4.84115 4.84836 4.90144 4.92188 4.98975 5.07845 5.46353 5.51025 5.64401 5.80272 6.06158 6.09060 6.20913 6.34212 6.40210 6.47964 6.83633 7.26615 7.37601 8.89451 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.004284 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.849193 B = 6535.036820 C = 7265.098016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.397 6.397 3 C 0.060 3.940 4 C 0.113 3.887 5 H 0.102 0.898 6 C 0.060 3.940 7 O -0.389 6.389 8 C 0.050 3.950 9 C 0.066 3.934 10 N -0.613 5.613 11 C 0.536 3.464 12 O -0.539 6.539 13 C 0.082 3.918 14 H 0.098 0.902 15 N -0.827 5.827 16 C -0.120 4.120 17 C 0.032 3.968 18 C -0.543 4.543 19 H 0.054 0.946 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.958 3.042 23 H -0.266 1.266 24 H -0.281 1.281 25 H -0.277 1.277 26 H 0.028 0.972 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.126 0.874 33 H 0.054 0.946 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.350 0.650 38 H 0.343 0.657 39 H 0.043 0.957 40 H 0.065 0.935 41 H 0.002 0.998 42 H 0.001 0.999 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.608 4.084 -18.578 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.316 6.316 3 C -0.016 4.016 4 C 0.010 3.990 5 H 0.120 0.880 6 C -0.017 4.017 7 O -0.307 6.307 8 C -0.027 4.027 9 C -0.056 4.056 10 N -0.348 5.348 11 C 0.325 3.675 12 O -0.416 6.416 13 C -0.033 4.033 14 H 0.116 0.884 15 N -0.358 5.358 16 C -0.160 4.160 17 C -0.005 4.005 18 C -0.581 4.581 19 H 0.072 0.928 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.783 3.217 23 H -0.190 1.190 24 H -0.206 1.206 25 H -0.202 1.202 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.144 0.856 33 H 0.073 0.927 34 H 0.147 0.853 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.020 0.980 42 H 0.019 0.981 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.118 3.736 -19.325 20.337 hybrid contribution 0.513 0.828 2.135 2.346 sum -4.605 4.563 -17.191 18.372 Atomic orbital electron populations 1.22581 0.80519 1.02400 0.99636 1.87779 1.20525 1.27940 1.95384 1.22782 0.91062 0.86432 1.01357 1.22213 0.94510 0.97160 0.85133 0.87984 1.23004 0.81490 0.99750 0.97470 1.87926 1.24080 1.72746 1.45987 1.23153 1.02876 0.92804 0.83864 1.22764 0.80980 1.01366 1.00520 1.48057 1.10299 1.59090 1.17363 1.20498 0.84492 0.79473 0.83070 1.90518 1.20586 1.52027 1.78487 1.21398 0.92407 0.96905 0.92614 0.88390 1.58733 1.17819 1.24269 1.34964 1.22156 0.98862 0.98177 0.96803 1.18950 0.94716 0.94461 0.92405 1.21624 1.32402 0.95094 1.08959 0.92780 1.25837 0.97523 0.96191 0.99580 1.70069 1.45450 1.12108 1.29016 0.85506 0.78444 0.79173 0.78574 1.19011 1.20644 1.20222 0.95296 0.92929 0.90046 0.91050 0.91791 0.92783 0.85625 0.92728 0.85266 0.89429 0.88495 0.83495 0.84385 0.93847 0.91657 0.97970 0.98098 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.05 10.78 113.37 1.22 2.27 16 2 O -0.40 -11.11 7.86 -126.29 -0.99 -12.10 16 3 C 0.06 1.45 4.69 71.98 0.34 1.79 16 4 C 0.11 2.57 3.47 44.96 0.16 2.73 16 5 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 6 C 0.06 1.21 6.22 72.08 0.45 1.65 16 7 O -0.39 -8.45 10.74 -148.98 -1.60 -10.05 16 8 C 0.05 1.00 7.00 72.22 0.51 1.51 16 9 C 0.07 1.54 5.71 86.49 0.49 2.03 16 10 N -0.61 -16.58 3.00 -792.74 -2.38 -18.96 16 11 C 0.54 17.63 6.40 87.66 0.56 18.20 16 12 O -0.54 -19.43 10.96 19.67 0.22 -19.22 16 13 C 0.08 2.81 2.35 44.17 0.10 2.91 16 14 H 0.10 3.27 6.80 -2.39 -0.02 3.25 16 15 N -0.83 -28.96 8.94 -171.80 -1.54 -30.49 16 16 C -0.12 -4.68 4.49 30.59 0.14 -4.54 16 17 C 0.03 1.55 4.74 29.85 0.14 1.69 16 18 C -0.54 -29.53 9.11 25.60 0.23 -29.30 16 19 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 20 C 0.01 0.40 5.46 84.65 0.46 0.86 16 21 N -0.93 -53.92 13.29 21.45 0.28 -53.64 16 22 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 H 0.03 0.75 8.05 -2.38 -0.02 0.73 16 27 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 2.10 5.80 -7.79 -0.05 2.06 16 30 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.05 1.25 7.40 -2.38 -0.02 1.23 16 32 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 34 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 2.41 5.13 -2.38 -0.01 2.40 16 37 H 0.35 12.49 7.55 -89.69 -0.68 11.81 16 38 H 0.34 12.13 8.58 -89.70 -0.77 11.36 16 39 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 2.41 6.83 -2.39 -0.02 2.39 16 41 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.00 0.04 6.87 -2.39 -0.02 0.02 16 43 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -65.58 336.56 0.37 -65.21 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.46 Total: 32.37 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 4.80 Total: 1.81 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -3.63 Total: -103.09 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -2.38 Total: -41.37 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -65.58 0.37 -65.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341391908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.569 kcal (2) G-P(sol) polarization free energy of solvation -65.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds