Wall clock time and date at job start Tue Mar 31 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00222 * 2 1 4 4 C 1.53001 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.67942 * 181.46152 * 4 3 2 6 6 C 1.53296 * 109.67705 * 301.97433 * 4 3 2 7 7 O 1.42970 * 109.21999 * 172.02558 * 6 4 3 8 8 C 1.42960 * 114.16643 * 297.41717 * 7 6 4 9 9 C 1.53304 * 109.21950 * 62.58213 * 8 7 6 10 10 N 1.47145 * 108.38424 * 307.69800 * 9 8 7 11 11 C 1.34778 * 120.97926 * 230.55654 * 10 9 8 12 12 O 1.21284 * 120.00182 * 185.62639 * 11 10 9 13 13 C 1.50707 * 120.00278 * 5.62427 * 11 10 9 14 14 H 1.09004 * 109.46623 * 39.99400 * 13 11 10 15 15 N 1.46891 * 109.47471 * 159.99952 * 13 11 10 16 16 C 1.52999 * 109.46984 * 280.00322 * 13 11 10 17 17 C 1.52998 * 109.47297 * 174.99629 * 16 13 11 18 18 C 1.50697 * 109.47142 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00357 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99752 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00298 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99731 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47336 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47129 * 119.99982 * 22 20 18 25 25 H 1.48495 * 109.46943 * 239.99830 * 22 20 18 26 26 H 1.09001 * 109.46835 * 300.00351 * 1 2 3 27 27 H 1.08998 * 109.47405 * 59.99845 * 1 2 3 28 28 H 1.09001 * 109.47338 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46921 * 299.99842 * 3 2 1 30 30 H 1.09000 * 109.47028 * 59.99631 * 3 2 1 31 31 H 1.08998 * 109.51627 * 291.95028 * 6 4 3 32 32 H 1.09006 * 109.51193 * 52.05387 * 6 4 3 33 33 H 1.09001 * 109.51123 * 182.50548 * 8 7 6 34 34 H 1.08996 * 109.51465 * 302.61099 * 8 7 6 35 35 H 1.09005 * 109.67620 * 67.42206 * 9 8 7 36 36 H 1.08997 * 109.67709 * 187.97189 * 9 8 7 37 37 H 1.00905 * 111.00061 * 59.99995 * 15 13 11 38 38 H 1.00900 * 111.00143 * 183.95432 * 15 13 11 39 39 H 1.09005 * 109.47084 * 294.99539 * 16 13 11 40 40 H 1.08999 * 109.47316 * 54.99430 * 16 13 11 41 41 H 1.09005 * 109.46981 * 299.99974 * 17 16 13 42 42 H 1.08999 * 109.47099 * 59.99669 * 17 16 13 43 43 H 0.96996 * 120.00676 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9825 2.1784 0.0255 6 6 3.9902 0.3816 1.2235 7 8 5.3908 0.1150 1.1177 8 6 5.7506 -0.6861 -0.0103 9 6 5.3859 0.0622 -1.2977 10 7 3.9759 0.4740 -1.2116 11 6 3.1131 0.2077 -2.2121 12 8 1.9819 0.6430 -2.1694 13 6 3.5539 -0.6309 -3.3842 14 1 4.1773 -1.4517 -3.0295 15 7 2.3735 -1.1732 -4.0698 16 6 4.3562 0.2349 -4.3576 17 6 4.9091 -0.6416 -5.4832 18 6 5.6988 0.2113 -6.4423 19 1 5.7969 1.2724 -6.2665 20 6 6.2960 -0.3630 -7.5444 21 7 6.1769 -1.6551 -7.7584 22 14 7.2755 0.6941 -8.7329 23 1 7.2581 2.1051 -8.2703 24 1 8.6776 0.2079 -8.7879 25 1 6.6690 0.6098 -10.0857 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6886 1.8463 -0.8901 30 1 1.6886 1.8463 0.8900 31 1 3.7964 0.9569 2.1288 32 1 3.4419 -0.5595 1.2657 33 1 6.8233 -0.8790 0.0073 34 1 5.2100 -1.6318 0.0274 35 1 6.0199 0.9428 -1.4024 36 1 5.5248 -0.5949 -2.1561 37 1 1.7792 -0.4313 -4.4082 38 1 2.6434 -1.7912 -4.8204 39 1 3.7080 1.0027 -4.7801 40 1 5.1821 0.7084 -3.8268 41 1 5.5573 -1.4094 -5.0608 42 1 4.0832 -1.1151 -6.0140 43 1 6.5967 -2.0591 -8.5339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341391922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:13 Heat of formation + Delta-G solvation = -110.636176 kcal Electronic energy + Delta-G solvation = -24461.353700 eV Core-core repulsion = 20928.432894 eV Total energy + Delta-G solvation = -3532.920806 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.66150 -38.30847 -37.44733 -35.48858 -34.65112 -32.92533 -32.19630 -29.89941 -28.64182 -26.87555 -26.37966 -25.44947 -23.96638 -22.89942 -21.64038 -20.26914 -18.90854 -17.51644 -16.74958 -16.59383 -16.30773 -15.54201 -15.41529 -15.36078 -15.29589 -14.75272 -14.52508 -14.30971 -14.19046 -13.62907 -13.35407 -13.14119 -12.65373 -12.57576 -12.14417 -12.07531 -11.81795 -11.56935 -11.46000 -11.14013 -11.01404 -10.89251 -10.83022 -10.64506 -10.22655 -9.99987 -9.79283 -9.53076 -9.25324 -8.73517 -8.46111 -8.37983 -8.09904 -6.10424 -4.13603 2.88582 3.03310 3.24790 3.33059 3.36807 3.68944 3.93549 4.37782 4.58919 4.67047 4.87783 4.99727 5.09127 5.14923 5.20054 5.25915 5.26985 5.31350 5.44479 5.47898 5.57739 5.58627 5.67702 5.74031 5.77869 5.85029 5.91624 5.93705 6.27223 6.48761 6.57010 6.85107 6.97179 7.32182 7.41469 7.50019 7.58548 7.65765 7.86671 7.91779 8.29280 8.52617 8.92609 9.51604 11.00451 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.004287 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.052375 B = 6529.206078 C = 7260.352076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.376 6.376 3 C 0.059 3.941 4 C 0.118 3.882 5 H 0.088 0.912 6 C 0.054 3.946 7 O -0.383 6.383 8 C 0.047 3.953 9 C 0.070 3.930 10 N -0.614 5.614 11 C 0.540 3.460 12 O -0.521 6.521 13 C 0.075 3.925 14 H 0.093 0.907 15 N -0.828 5.828 16 C -0.140 4.140 17 C 0.025 3.975 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.027 0.973 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.344 0.656 38 H 0.353 0.647 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 3.243 17.258 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C -0.018 4.018 4 C 0.014 3.986 5 H 0.106 0.894 6 C -0.024 4.024 7 O -0.301 6.301 8 C -0.031 4.031 9 C -0.053 4.053 10 N -0.351 5.351 11 C 0.329 3.671 12 O -0.397 6.397 13 C -0.040 4.040 14 H 0.111 0.889 15 N -0.360 5.360 16 C -0.179 4.179 17 C -0.012 4.012 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.210 1.210 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.157 0.843 38 H 0.168 0.832 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.807 2.895 17.979 19.114 hybrid contribution 0.747 1.130 -1.772 2.231 sum -5.060 4.025 16.207 17.449 Atomic orbital electron populations 1.22513 0.81411 1.01927 0.99234 1.87818 1.19410 1.26920 1.95260 1.22792 0.90838 0.87033 1.01093 1.21969 0.94576 0.96308 0.85722 0.89421 1.22985 0.82072 1.00300 0.97020 1.87931 1.23695 1.72035 1.46414 1.23019 1.01536 0.93389 0.85112 1.22543 0.81949 1.00960 0.99821 1.48009 1.10009 1.59094 1.17981 1.20695 0.84285 0.79533 0.82560 1.90504 1.19830 1.51687 1.77648 1.21489 0.92798 0.96933 0.92741 0.88873 1.58726 1.17702 1.23877 1.35656 1.22432 0.98735 0.99116 0.97665 1.19099 0.95848 0.94596 0.91693 1.21212 1.32163 0.94625 1.08143 0.92699 1.25005 0.96434 0.94950 0.97855 1.69952 1.44499 1.10108 1.28604 0.86542 0.79865 0.80644 0.81007 1.19766 1.20917 1.20959 0.95406 0.93696 0.90480 0.88750 0.94657 0.88282 0.91469 0.87551 0.92396 0.90341 0.87676 0.84295 0.83212 0.92740 0.92518 0.96399 0.96421 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.56 10.77 101.05 1.09 1.64 16 2 O -0.38 -5.46 7.83 -59.08 -0.46 -5.92 16 3 C 0.06 0.76 4.68 37.16 0.17 0.93 16 4 C 0.12 1.46 3.47 -67.42 -0.23 1.23 16 5 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 6 C 0.05 0.60 6.23 37.31 0.23 0.84 16 7 O -0.38 -4.64 10.74 -35.23 -0.38 -5.02 16 8 C 0.05 0.51 6.99 37.31 0.26 0.77 16 9 C 0.07 0.87 5.68 -3.53 -0.02 0.85 16 10 N -0.61 -8.68 3.01 -164.75 -0.50 -9.17 16 11 C 0.54 8.99 6.39 -10.98 -0.07 8.92 16 12 O -0.52 -9.41 10.92 -18.29 -0.20 -9.61 16 13 C 0.08 1.29 2.35 -68.87 -0.16 1.13 16 14 H 0.09 1.55 6.79 -51.93 -0.35 1.20 16 15 N -0.83 -14.30 8.94 -5.66 -0.05 -14.35 16 16 C -0.14 -2.71 4.49 -26.73 -0.12 -2.83 16 17 C 0.02 0.59 4.74 -27.89 -0.13 0.46 16 18 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 22 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.04 0.59 8.03 -51.93 -0.42 0.17 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.41 5.85 -52.13 -0.30 1.11 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.84 7.42 -51.93 -0.39 0.45 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.11 1.35 5.14 -51.93 -0.27 1.09 16 37 H 0.34 5.97 8.58 -39.29 -0.34 5.63 16 38 H 0.35 6.13 7.55 -39.29 -0.30 5.83 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.06 6.85 -51.93 -0.36 0.70 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 LS Contribution 336.50 15.07 5.07 5.07 Total: -1.00 -31.00 336.50 -7.04 -38.04 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.84 Total: 8.93 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 0.61 Total: 0.99 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.19 Total: -48.55 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -1.04 Total: -20.54 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.00 -7.04 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341391922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.596 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds