Wall clock time and date at job start Tue Mar 31 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00222 * 2 1 4 4 C 1.53001 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.67942 * 181.46152 * 4 3 2 6 6 C 1.53296 * 109.67705 * 301.97433 * 4 3 2 7 7 O 1.42970 * 109.21999 * 172.02558 * 6 4 3 8 8 C 1.42960 * 114.16643 * 297.41717 * 7 6 4 9 9 C 1.53304 * 109.21950 * 62.58213 * 8 7 6 10 10 N 1.47145 * 108.38424 * 307.69800 * 9 8 7 11 11 C 1.34778 * 120.97926 * 230.55654 * 10 9 8 12 12 O 1.21284 * 120.00182 * 185.62639 * 11 10 9 13 13 C 1.50707 * 120.00278 * 5.62427 * 11 10 9 14 14 H 1.09004 * 109.46623 * 39.99400 * 13 11 10 15 15 N 1.46891 * 109.47471 * 159.99952 * 13 11 10 16 16 C 1.52999 * 109.46984 * 280.00322 * 13 11 10 17 17 C 1.52998 * 109.47297 * 174.99629 * 16 13 11 18 18 C 1.50697 * 109.47142 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00357 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99752 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00298 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99731 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47336 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47129 * 119.99982 * 22 20 18 25 25 H 1.48495 * 109.46943 * 239.99830 * 22 20 18 26 26 H 1.09001 * 109.46835 * 300.00351 * 1 2 3 27 27 H 1.08998 * 109.47405 * 59.99845 * 1 2 3 28 28 H 1.09001 * 109.47338 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46921 * 299.99842 * 3 2 1 30 30 H 1.09000 * 109.47028 * 59.99631 * 3 2 1 31 31 H 1.08998 * 109.51627 * 291.95028 * 6 4 3 32 32 H 1.09006 * 109.51193 * 52.05387 * 6 4 3 33 33 H 1.09001 * 109.51123 * 182.50548 * 8 7 6 34 34 H 1.08996 * 109.51465 * 302.61099 * 8 7 6 35 35 H 1.09005 * 109.67620 * 67.42206 * 9 8 7 36 36 H 1.08997 * 109.67709 * 187.97189 * 9 8 7 37 37 H 1.00905 * 111.00061 * 59.99995 * 15 13 11 38 38 H 1.00900 * 111.00143 * 183.95432 * 15 13 11 39 39 H 1.09005 * 109.47084 * 294.99539 * 16 13 11 40 40 H 1.08999 * 109.47316 * 54.99430 * 16 13 11 41 41 H 1.09005 * 109.46981 * 299.99974 * 17 16 13 42 42 H 1.08999 * 109.47099 * 59.99669 * 17 16 13 43 43 H 0.96996 * 120.00676 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9825 2.1784 0.0255 6 6 3.9902 0.3816 1.2235 7 8 5.3908 0.1150 1.1177 8 6 5.7506 -0.6861 -0.0103 9 6 5.3859 0.0622 -1.2977 10 7 3.9759 0.4740 -1.2116 11 6 3.1131 0.2077 -2.2121 12 8 1.9819 0.6430 -2.1694 13 6 3.5539 -0.6309 -3.3842 14 1 4.1773 -1.4517 -3.0295 15 7 2.3735 -1.1732 -4.0698 16 6 4.3562 0.2349 -4.3576 17 6 4.9091 -0.6416 -5.4832 18 6 5.6988 0.2113 -6.4423 19 1 5.7969 1.2724 -6.2665 20 6 6.2960 -0.3630 -7.5444 21 7 6.1769 -1.6551 -7.7584 22 14 7.2755 0.6941 -8.7329 23 1 7.2581 2.1051 -8.2703 24 1 8.6776 0.2079 -8.7879 25 1 6.6690 0.6098 -10.0857 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6886 1.8463 -0.8901 30 1 1.6886 1.8463 0.8900 31 1 3.7964 0.9569 2.1288 32 1 3.4419 -0.5595 1.2657 33 1 6.8233 -0.8790 0.0073 34 1 5.2100 -1.6318 0.0274 35 1 6.0199 0.9428 -1.4024 36 1 5.5248 -0.5949 -2.1561 37 1 1.7792 -0.4313 -4.4082 38 1 2.6434 -1.7912 -4.8204 39 1 3.7080 1.0027 -4.7801 40 1 5.1821 0.7084 -3.8268 41 1 5.5573 -1.4094 -5.0608 42 1 4.0832 -1.1151 -6.0140 43 1 6.5967 -2.0591 -8.5339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341391922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:13 Heat of formation + Delta-G solvation = -133.022797 kcal Electronic energy + Delta-G solvation = -24462.324457 eV Core-core repulsion = 20928.432894 eV Total energy + Delta-G solvation = -3533.891563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79201 -39.40816 -38.50879 -37.00651 -35.74539 -34.86526 -33.21018 -31.68970 -29.70394 -28.14238 -27.67703 -26.45254 -25.64982 -23.86722 -23.00229 -21.78888 -20.13510 -18.82773 -18.26475 -17.80393 -17.54909 -16.66793 -16.59870 -16.37079 -16.35770 -16.29082 -15.90239 -15.58164 -15.42664 -14.85439 -14.76065 -14.61605 -14.17925 -13.75619 -13.51216 -13.40736 -13.13256 -12.92329 -12.75835 -12.50543 -12.42484 -12.38917 -12.02580 -11.85140 -11.77995 -11.56702 -11.28425 -11.17966 -10.67996 -10.56568 -9.99078 -9.52432 -9.45073 -8.21418 -6.31789 1.38677 1.40585 1.52053 1.66955 1.84721 2.39965 2.82380 2.98568 3.12414 3.47082 3.68559 3.74934 3.92333 4.05311 4.06191 4.13893 4.23189 4.27540 4.31955 4.41282 4.58001 4.59229 4.64785 4.65660 4.78542 4.84137 4.84824 4.90217 4.91972 4.98914 5.07871 5.46361 5.50893 5.64430 5.80252 6.06190 6.08971 6.20962 6.34366 6.40476 6.47968 6.83649 7.26835 7.37583 8.89479 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.004287 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.052375 B = 6529.206078 C = 7260.352076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.397 6.397 3 C 0.061 3.939 4 C 0.113 3.887 5 H 0.102 0.898 6 C 0.060 3.940 7 O -0.389 6.389 8 C 0.050 3.950 9 C 0.066 3.934 10 N -0.612 5.612 11 C 0.536 3.464 12 O -0.539 6.539 13 C 0.082 3.918 14 H 0.098 0.902 15 N -0.827 5.827 16 C -0.120 4.120 17 C 0.032 3.968 18 C -0.543 4.543 19 H 0.054 0.946 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.958 3.042 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.281 1.281 26 H 0.052 0.948 27 H 0.028 0.972 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.126 0.874 32 H 0.054 0.946 33 H 0.130 0.870 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.343 0.657 38 H 0.350 0.650 39 H 0.043 0.957 40 H 0.065 0.935 41 H 0.002 0.998 42 H 0.001 0.999 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 4.264 18.555 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.316 6.316 3 C -0.015 4.015 4 C 0.010 3.990 5 H 0.120 0.880 6 C -0.017 4.017 7 O -0.307 6.307 8 C -0.027 4.027 9 C -0.056 4.056 10 N -0.348 5.348 11 C 0.325 3.675 12 O -0.416 6.416 13 C -0.033 4.033 14 H 0.116 0.884 15 N -0.358 5.358 16 C -0.160 4.160 17 C -0.005 4.005 18 C -0.581 4.581 19 H 0.072 0.928 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.783 3.217 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.207 1.207 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.144 0.856 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.156 0.844 38 H 0.165 0.835 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.020 0.980 42 H 0.019 0.981 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.092 3.925 19.304 20.346 hybrid contribution 0.509 0.804 -2.144 2.345 sum -4.583 4.729 17.160 18.381 Atomic orbital electron populations 1.22575 0.80527 1.02384 0.99622 1.87781 1.20519 1.27930 1.95375 1.22755 0.91056 0.86419 1.01283 1.22210 0.94522 0.97030 0.85265 0.87982 1.23007 0.81497 0.99843 0.97390 1.87931 1.24080 1.72112 1.46609 1.23081 1.02903 0.92731 0.83995 1.22677 0.81059 1.01403 1.00495 1.48048 1.10321 1.58503 1.17924 1.20495 0.84475 0.79598 0.82971 1.90524 1.20566 1.52298 1.78180 1.21395 0.92410 0.96815 0.92693 0.88396 1.58736 1.17732 1.23784 1.35525 1.22155 0.98873 0.98221 0.96745 1.18950 0.94719 0.94416 0.92443 1.21625 1.32505 0.94971 1.08993 0.92782 1.25836 0.97499 0.96133 0.99650 1.70060 1.45519 1.11705 1.29353 0.85507 0.78447 0.79164 0.78589 1.19010 1.20215 1.20651 0.92946 0.95290 0.90075 0.91196 0.91756 0.85613 0.92788 0.85237 0.92757 0.89461 0.88497 0.84388 0.83499 0.93853 0.91667 0.97974 0.98099 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.06 10.77 113.37 1.22 2.28 16 2 O -0.40 -11.11 7.83 -126.18 -0.99 -12.10 16 3 C 0.06 1.48 4.68 71.98 0.34 1.82 16 4 C 0.11 2.57 3.47 44.97 0.16 2.73 16 5 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 6 C 0.06 1.20 6.23 72.08 0.45 1.65 16 7 O -0.39 -8.44 10.74 -148.98 -1.60 -10.04 16 8 C 0.05 1.00 6.99 72.08 0.50 1.50 16 9 C 0.07 1.54 5.68 86.36 0.49 2.03 16 10 N -0.61 -16.58 3.01 -793.52 -2.38 -18.97 16 11 C 0.54 17.64 6.39 87.66 0.56 18.20 16 12 O -0.54 -19.42 10.92 19.76 0.22 -19.21 16 13 C 0.08 2.81 2.35 44.17 0.10 2.92 16 14 H 0.10 3.26 6.79 -2.39 -0.02 3.25 16 15 N -0.83 -28.96 8.94 -171.81 -1.54 -30.50 16 16 C -0.12 -4.68 4.49 30.59 0.14 -4.54 16 17 C 0.03 1.55 4.74 29.85 0.14 1.69 16 18 C -0.54 -29.55 9.11 25.60 0.23 -29.31 16 19 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 20 C 0.01 0.41 5.46 84.66 0.46 0.87 16 21 N -0.93 -53.92 13.29 21.45 0.28 -53.64 16 22 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.03 0.75 8.03 -2.39 -0.02 0.73 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 2.06 5.85 -5.60 -0.03 2.02 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 1.24 7.42 -2.38 -0.02 1.23 16 33 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.10 2.41 5.14 -2.39 -0.01 2.40 16 37 H 0.34 12.13 8.58 -89.69 -0.77 11.36 16 38 H 0.35 12.49 7.55 -89.69 -0.68 11.81 16 39 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.06 2.41 6.85 -2.39 -0.02 2.39 16 41 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 42 H 0.00 0.04 6.87 -2.39 -0.02 0.02 16 43 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -65.61 336.50 0.37 -65.24 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -0.44 Total: 32.32 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 4.80 Total: 1.83 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -3.64 Total: -103.10 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -2.37 Total: -41.35 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -65.61 0.37 -65.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341391922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.784 kcal (2) G-P(sol) polarization free energy of solvation -65.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds