Wall clock time and date at job start Tue Mar 31 2020 03:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00035 * 2 1 4 4 O 1.42901 * 109.47528 * 85.62771 * 3 2 1 5 5 C 1.42898 * 113.99916 * 286.64647 * 4 3 2 6 6 C 1.50705 * 109.47003 * 205.63124 * 3 2 1 7 7 O 1.21279 * 119.99960 * 214.99835 * 6 3 2 8 8 N 1.34779 * 119.99689 * 34.99464 * 6 3 2 9 9 C 1.46502 * 119.99530 * 180.02562 * 8 6 3 10 10 C 1.53004 * 109.46777 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.49851 * 55.06205 * 10 9 8 12 12 C 1.53041 * 109.49554 * 175.16258 * 10 9 8 13 13 C 1.53041 * 109.53841 * 181.31746 * 12 10 9 14 14 C 1.53191 * 109.30957 * 298.63128 * 13 12 10 15 15 N 1.46932 * 108.77762 * 54.63878 * 14 13 12 16 16 C 1.36928 * 120.63320 * 126.36656 * 15 14 13 17 17 H 1.07994 * 120.00418 * 327.19226 * 16 15 14 18 18 C 1.38822 * 119.99881 * 147.19315 * 16 15 14 19 19 N 1.31618 * 119.99921 * 346.77899 * 18 16 15 20 20 Si 1.86802 * 119.99834 * 166.78591 * 18 16 15 21 21 H 1.48502 * 109.47245 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47078 * 120.00030 * 20 18 16 23 23 H 1.48500 * 109.46747 * 239.99721 * 20 18 16 24 24 C 1.46926 * 118.73299 * 306.38743 * 15 14 13 25 25 H 1.09009 * 109.46881 * 307.29842 * 1 2 3 26 26 H 1.08996 * 109.47299 * 67.29330 * 1 2 3 27 27 H 1.09000 * 109.46987 * 187.30392 * 1 2 3 28 28 H 1.09006 * 109.46874 * 325.62684 * 3 2 1 29 29 H 1.09003 * 109.47023 * 77.37899 * 5 4 3 30 30 H 1.08997 * 109.47077 * 197.37509 * 5 4 3 31 31 H 1.08995 * 109.47262 * 317.37581 * 5 4 3 32 32 H 0.96997 * 120.00475 * 359.97438 * 8 6 3 33 33 H 1.08995 * 109.47125 * 299.99603 * 9 8 6 34 34 H 1.08996 * 109.47127 * 60.00374 * 9 8 6 35 35 H 1.09004 * 109.46024 * 301.33521 * 12 10 9 36 36 H 1.09001 * 109.46426 * 61.29388 * 12 10 9 37 37 H 1.08996 * 109.49913 * 178.68432 * 13 12 10 38 38 H 1.08996 * 109.50087 * 58.58450 * 13 12 10 39 39 H 1.09000 * 109.59023 * 294.84867 * 14 13 12 40 40 H 1.09006 * 109.70765 * 174.49072 * 14 13 12 41 41 H 0.96998 * 120.00076 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.58927 * 293.82323 * 24 15 14 43 43 H 1.08999 * 109.70358 * 173.46311 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 2.1102 1.7825 1.3433 5 6 0.8595 2.1655 1.9186 6 6 3.3849 1.2433 -0.6146 7 8 4.2698 1.9585 -0.1948 8 7 3.6308 0.3928 -1.6309 9 6 4.9672 0.3320 -2.2280 10 6 4.9765 -0.7052 -3.3527 11 1 4.1910 -0.4701 -4.0710 12 6 6.3356 -0.6841 -4.0558 13 6 6.3348 -1.6981 -5.2021 14 6 6.1054 -3.1028 -4.6356 15 7 4.8726 -3.0948 -3.8361 16 6 3.8740 -3.9982 -4.0846 17 1 3.6964 -4.3432 -5.0924 18 6 3.0900 -4.4706 -3.0409 19 7 3.4588 -4.2631 -1.7946 20 14 1.5116 -5.4009 -3.4055 21 1 1.3232 -5.4993 -4.8752 22 1 1.5955 -6.7648 -2.8242 23 1 0.3612 -4.6775 -2.8067 24 6 4.7317 -2.0988 -2.7653 25 1 -0.3633 0.6228 0.8176 26 1 -0.3634 0.3967 -0.9480 27 1 -0.3633 -1.0193 0.1306 28 1 1.3831 1.9824 -0.5802 29 1 0.3077 1.2735 2.2154 30 1 1.0383 2.7900 2.7939 31 1 0.2785 2.7250 1.1856 32 1 2.9232 -0.1795 -1.9664 33 1 5.2288 1.3093 -2.6334 34 1 5.6931 0.0485 -1.4659 35 1 6.5233 0.3133 -4.4535 36 1 7.1178 -0.9433 -3.3423 37 1 7.2949 -1.6659 -5.7170 38 1 5.5370 -1.4539 -5.9034 39 1 6.9483 -3.3846 -4.0046 40 1 6.0060 -3.8171 -5.4530 41 1 2.9111 -4.5935 -1.0654 42 1 5.4626 -2.2986 -1.9818 43 1 3.7260 -2.1477 -2.3479 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350350202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:37 Heat of formation + Delta-G solvation = -109.000796 kcal Electronic energy + Delta-G solvation = -24106.458535 eV Core-core repulsion = 20573.608645 eV Total energy + Delta-G solvation = -3532.849890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.08037 -38.51162 -37.57719 -36.22919 -34.57264 -33.01534 -30.98990 -29.88241 -29.06858 -26.27711 -26.10741 -25.26692 -24.52556 -22.13741 -20.91936 -20.36349 -19.07139 -17.75507 -17.53388 -17.40107 -16.66572 -15.47240 -15.19183 -14.88019 -14.62012 -14.53929 -14.09516 -13.80013 -13.75456 -13.58586 -13.39493 -12.85304 -12.84885 -12.33182 -12.29208 -12.16281 -12.00169 -11.60336 -11.20415 -10.98779 -10.75653 -10.48997 -10.20181 -10.19725 -10.17390 -10.04530 -9.92573 -9.78413 -9.52020 -9.39346 -8.74365 -8.48185 -6.58288 -5.77637 -3.26263 2.40299 3.08978 3.34139 3.42722 3.44863 3.62362 4.05505 4.46106 4.48125 4.86033 4.93411 5.07105 5.16107 5.18742 5.19328 5.35626 5.46459 5.56246 5.59529 5.62356 5.62719 5.81967 5.97136 6.11935 6.30416 6.31775 6.42522 6.51222 6.66671 6.67669 6.77413 6.79285 6.84620 6.87998 7.04267 7.32854 7.64232 7.75549 7.81002 8.36335 8.48673 9.22820 9.84321 10.44904 11.30011 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.005867 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.318087 B = 4771.309794 C = 6536.769373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.376 6.376 3 C 0.230 3.770 4 O -0.367 6.367 5 C 0.023 3.977 6 C 0.533 3.467 7 O -0.524 6.524 8 N -0.700 5.700 9 C 0.130 3.870 10 C -0.128 4.128 11 H 0.069 0.931 12 C -0.100 4.100 13 C -0.133 4.133 14 C 0.143 3.857 15 N -0.591 5.591 16 C -0.258 4.258 17 H 0.063 0.937 18 C 0.008 3.992 19 N -0.896 5.896 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.181 3.819 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.412 0.588 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.017 0.983 40 H 0.052 0.948 41 H 0.254 0.746 42 H 0.020 0.980 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.247 11.659 0.975 12.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.296 6.296 3 C 0.130 3.870 4 O -0.286 6.286 5 C -0.074 4.074 6 C 0.316 3.684 7 O -0.400 6.400 8 N -0.353 5.353 9 C 0.006 3.994 10 C -0.148 4.148 11 H 0.088 0.912 12 C -0.138 4.138 13 C -0.172 4.172 14 C 0.017 3.983 15 N -0.314 5.314 16 C -0.388 4.388 17 H 0.080 0.920 18 C -0.191 4.191 19 N -0.539 5.539 20 Si 0.729 3.271 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.055 3.945 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.248 0.752 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.403 11.929 1.515 12.806 hybrid contribution -1.775 -0.608 -0.267 1.895 sum -6.178 11.321 1.248 12.957 Atomic orbital electron populations 1.23181 0.80415 1.04160 1.00367 1.88207 1.20404 1.27273 1.93720 1.23162 0.93692 0.84845 0.85256 1.88148 1.30128 1.82383 1.27907 1.23045 0.86090 0.99491 0.98739 1.19422 0.87617 0.80979 0.80428 1.90722 1.44637 1.42682 1.61963 1.45918 1.14589 1.39844 1.34977 1.21479 0.83040 0.98986 0.95895 1.22156 0.98066 0.98398 0.96217 0.91217 1.21332 0.96662 0.98089 0.97716 1.21987 0.99948 0.97913 0.97332 1.20942 0.89582 0.93387 0.94421 1.43972 1.14614 1.34731 1.38069 1.19166 1.08684 1.18741 0.92214 0.91963 1.25186 1.00136 0.98435 0.95385 1.70004 1.37527 1.48681 0.97707 0.86277 0.83616 0.79473 0.77707 1.20293 1.21685 1.21586 1.20758 1.01730 0.82878 0.89150 0.93247 0.93383 0.88612 0.90138 0.93006 0.89205 0.93734 0.75200 0.92101 0.91397 0.93422 0.92404 0.93103 0.92488 0.96545 0.92951 0.93566 0.96181 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 10.68 101.05 1.08 1.24 16 2 O -0.38 -5.71 9.87 -59.04 -0.58 -6.29 16 3 C 0.23 3.36 3.32 36.01 0.12 3.48 16 4 O -0.37 -5.60 10.26 -65.87 -0.68 -6.28 16 5 C 0.02 0.22 9.69 101.05 0.98 1.20 16 6 C 0.53 9.34 7.59 -10.98 -0.08 9.25 16 7 O -0.52 -10.72 16.67 -12.98 -0.22 -10.94 16 8 N -0.70 -11.83 5.24 -60.29 -0.32 -12.15 16 9 C 0.13 2.19 5.07 -4.04 -0.02 2.17 16 10 C -0.13 -2.30 2.38 -90.49 -0.22 -2.52 16 11 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 12 C -0.10 -1.64 5.17 -26.69 -0.14 -1.77 16 13 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 14 C 0.14 2.99 6.52 -3.71 -0.02 2.96 16 15 N -0.59 -14.55 2.97 -172.31 -0.51 -15.07 16 16 C -0.26 -6.95 9.55 -15.06 -0.14 -7.10 16 17 H 0.06 1.66 7.86 -52.49 -0.41 1.25 16 18 C 0.01 0.22 4.98 -17.43 -0.09 0.14 16 19 N -0.90 -25.58 11.32 55.49 0.63 -24.95 16 20 Si 0.90 21.16 29.57 -169.99 -5.03 16.13 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 24 C 0.18 4.16 4.34 -3.71 -0.02 4.14 16 25 H 0.05 0.43 4.77 -51.92 -0.25 0.18 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.08 0.91 7.56 -51.93 -0.39 0.51 16 29 H 0.05 0.47 6.37 -51.93 -0.33 0.14 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.34 7.77 -51.93 -0.40 -0.06 16 32 H 0.41 6.88 7.13 -40.82 -0.29 6.59 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 2.12 5.51 -51.93 -0.29 1.83 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -32.62 343.50 -7.22 -39.84 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.98 Total: 3.75 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 1.29 Total: 10.77 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.20 Total: -52.17 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -1.47 Total: -23.51 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.62 -7.22 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350350202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.161 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds