Wall clock time and date at job start Tue Mar 31 2020 02:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46497 * 119.99974 * 269.99961 * 3 2 1 5 5 C 1.50696 * 109.47477 * 269.99812 * 4 3 2 6 6 H 1.07999 * 119.99861 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00536 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99523 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00314 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47107 * 89.99913 * 9 7 5 11 11 H 1.48505 * 109.47235 * 210.00157 * 9 7 5 12 12 H 1.48505 * 109.47168 * 330.00032 * 9 7 5 13 13 C 1.34780 * 120.00026 * 90.00358 * 3 2 1 14 14 O 1.21283 * 119.99925 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99669 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.46965 * 180.02562 * 15 13 3 17 17 C 1.48530 * 110.99918 * 52.60015 * 16 15 13 18 18 C 1.54940 * 103.22772 * 159.72252 * 17 16 15 19 19 H 1.09000 * 110.72311 * 80.94364 * 18 17 16 20 20 O 1.42898 * 110.87937 * 204.16017 * 18 17 16 21 21 C 1.54604 * 102.91923 * 322.58912 * 18 17 16 22 22 H 1.09001 * 110.30354 * 263.04015 * 21 18 17 23 23 O 1.42894 * 110.39164 * 140.91356 * 21 18 17 24 24 C 1.42901 * 114.00053 * 152.78015 * 23 21 18 25 25 C 1.47899 * 110.99831 * 170.00161 * 16 15 13 26 26 H 1.08995 * 109.47186 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46987 * 300.00026 * 1 2 3 28 28 H 1.09001 * 109.47087 * 59.99407 * 1 2 3 29 29 H 1.09001 * 109.46987 * 239.99974 * 2 1 3 30 30 H 1.09001 * 109.47087 * 120.00593 * 2 1 3 31 31 H 1.08997 * 109.47423 * 30.00546 * 4 3 2 32 32 H 1.09010 * 109.46962 * 150.00251 * 4 3 2 33 33 H 0.97004 * 119.99770 * 180.02562 * 8 7 5 34 34 H 1.08993 * 109.47133 * 60.00295 * 15 13 3 35 35 H 1.08996 * 109.47320 * 300.00036 * 15 13 3 36 36 H 1.09002 * 110.67228 * 278.15582 * 17 16 15 37 37 H 1.09004 * 110.67104 * 41.28985 * 17 16 15 38 38 H 0.96701 * 113.99703 * 293.58520 * 20 18 17 39 39 H 1.08995 * 109.47587 * 180.02562 * 24 23 21 40 40 H 1.09008 * 109.47260 * 300.00285 * 24 23 21 41 41 H 1.09004 * 109.46816 * 59.99902 * 24 23 21 42 42 H 1.08997 * 109.91760 * 333.50746 * 25 16 15 43 43 H 1.09001 * 109.91722 * 94.60704 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1492 2.3896 -2.8780 8 7 3.3491 3.1257 -3.6181 9 14 5.9131 2.0955 -3.4176 10 1 5.9760 0.8744 -4.2601 11 1 6.3923 3.2627 -4.2009 12 1 6.7735 1.9159 -2.2206 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9914 1.3062 2.4723 16 7 2.3092 2.2064 3.5889 17 6 1.5994 3.5032 3.4458 18 6 1.6127 4.0754 4.8856 19 1 2.5710 4.5463 5.1046 20 8 0.5411 5.0016 5.0754 21 6 1.4092 2.8166 5.7598 22 1 0.3591 2.7111 6.0323 23 8 2.2207 2.8892 6.9337 24 6 1.6983 2.1618 8.0473 25 6 1.8530 1.6367 4.8753 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.5817 1.6878 -2.0283 32 1 2.0956 3.1411 -1.1383 33 1 3.6750 3.5155 -4.4444 34 1 2.6213 0.4186 2.5302 35 1 0.9434 1.0125 2.5299 36 1 2.1369 4.1630 2.7647 37 1 0.5764 3.3462 3.1037 38 1 0.6212 5.8089 4.5492 39 1 2.3713 2.2672 8.8981 40 1 0.7164 2.5556 8.3101 41 1 1.6084 1.1081 7.7830 42 1 1.0130 0.9630 4.7059 43 1 2.6708 1.0974 5.3534 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460105005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:28 Heat of formation + Delta-G solvation = -137.781655 kcal Electronic energy + Delta-G solvation = -23770.999941 eV Core-core repulsion = 20236.902019 eV Total energy + Delta-G solvation = -3534.097922 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.31288 -40.10896 -37.91670 -37.14228 -36.65981 -34.91334 -32.11883 -31.51261 -29.45084 -29.23945 -27.75709 -26.64003 -24.73846 -24.00057 -22.56500 -21.88588 -19.96933 -18.88923 -18.61610 -18.00450 -17.52359 -17.21491 -16.74235 -16.54669 -16.27797 -15.92713 -15.57950 -15.11965 -15.06721 -14.66055 -14.31297 -14.28884 -13.89475 -13.71276 -13.58135 -13.40841 -13.26921 -13.11349 -12.88425 -12.74952 -12.67705 -12.48691 -12.26674 -12.12250 -11.92151 -11.70985 -11.60175 -11.11938 -10.72435 -10.63905 -10.35170 -9.53714 -9.35665 -8.22296 -6.36803 1.36194 1.39408 1.49738 1.82464 2.20582 2.40425 2.55733 2.83830 3.07250 3.34346 3.44649 3.71684 3.83013 4.00283 4.09966 4.16438 4.21201 4.37989 4.40465 4.42898 4.47350 4.58492 4.59242 4.63487 4.76520 4.85938 4.88318 4.92467 4.95408 5.04895 5.06415 5.21810 5.37320 5.58795 5.68407 5.81899 5.89992 6.07329 6.20815 6.68894 6.71049 6.81236 7.29309 7.51095 8.84576 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021828 B = 0.003850 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.466932 B = 7271.470493 C = 7626.710756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.265 3.735 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.495 3.505 14 O -0.578 6.578 15 C 0.042 3.958 16 N -0.514 5.514 17 C 0.015 3.985 18 C 0.104 3.896 19 H 0.071 0.929 20 O -0.570 6.570 21 C 0.089 3.911 22 H 0.089 0.911 23 O -0.399 6.399 24 C 0.023 3.977 25 C 0.021 3.979 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.021 0.979 32 H -0.004 1.004 33 H 0.267 0.733 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.399 0.601 39 H 0.098 0.902 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 -7.638 19.256 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.144 3.856 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.283 3.717 14 O -0.458 6.458 15 C -0.089 4.089 16 N -0.241 5.241 17 C -0.114 4.114 18 C 0.044 3.956 19 H 0.089 0.911 20 O -0.378 6.378 21 C 0.031 3.969 22 H 0.107 0.893 23 O -0.317 6.317 24 C -0.072 4.072 25 C -0.106 4.106 26 H 0.115 0.885 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.039 0.961 32 H 0.014 0.986 33 H 0.076 0.924 34 H 0.143 0.857 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.249 0.751 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.215 -7.250 19.494 22.015 hybrid contribution 0.027 0.493 -1.338 1.426 sum -7.189 -6.757 18.156 20.664 Atomic orbital electron populations 1.22148 0.94624 1.03524 1.01514 1.21767 0.95234 0.81371 1.04040 1.48275 1.63968 1.15134 1.06129 1.18659 0.95144 0.91470 0.80358 1.21716 0.97954 1.31895 1.06446 0.92959 1.25845 1.02326 0.94489 0.96474 1.70051 1.37759 1.34278 1.14773 0.85426 0.79089 0.78192 0.78171 1.18760 1.20684 1.19880 1.21094 0.77552 0.86715 0.86332 1.90581 1.47348 1.20366 1.87548 1.22306 1.02689 0.96519 0.87380 1.64503 1.54850 1.03147 1.01578 1.23898 0.97040 0.93075 0.97346 1.22659 0.90429 0.90103 0.92447 0.91091 1.86365 1.47316 1.33698 1.70431 1.22812 0.95232 0.93051 0.85807 0.89316 1.87934 1.49073 1.73553 1.21184 1.23030 0.99860 0.95987 0.88368 1.23502 1.01226 0.96608 0.89304 0.88509 0.92373 0.94361 0.90928 0.88073 0.96127 0.98579 0.92446 0.85750 0.89191 0.89573 0.93607 0.75065 0.88311 0.93301 0.92406 0.90277 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 10.24 71.98 0.74 -3.04 16 2 C 0.10 2.88 5.93 86.38 0.51 3.39 16 3 N -0.60 -25.20 2.46 -826.15 -2.03 -27.23 16 4 C 0.27 14.32 5.16 85.63 0.44 14.76 16 5 C -0.54 -31.46 9.39 25.60 0.24 -31.22 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.44 5.46 84.65 0.46 0.90 16 8 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 9 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 13 C 0.49 20.33 7.38 87.66 0.65 20.98 16 14 O -0.58 -29.47 13.10 -3.04 -0.04 -29.51 16 15 C 0.04 1.17 4.07 85.56 0.35 1.52 16 16 N -0.51 -15.12 5.26 -887.56 -4.67 -19.78 16 17 C 0.01 0.45 5.03 86.65 0.44 0.89 16 18 C 0.10 2.75 4.17 31.80 0.13 2.88 16 19 H 0.07 2.04 8.09 -2.39 -0.02 2.02 16 20 O -0.57 -13.74 13.41 -148.98 -2.00 -15.74 16 21 C 0.09 2.02 3.22 31.48 0.10 2.12 16 22 H 0.09 1.78 7.78 -2.39 -0.02 1.76 16 23 O -0.40 -9.19 10.30 -148.98 -1.53 -10.72 16 24 C 0.02 0.34 10.86 113.37 1.23 1.57 16 25 C 0.02 0.45 6.51 86.45 0.56 1.01 16 26 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.26 7.22 -2.39 -0.02 1.24 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 30 H 0.10 2.22 6.44 -2.39 -0.02 2.20 16 31 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 32 H 0.00 -0.24 7.42 -2.38 -0.02 -0.26 16 33 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.12 2.94 7.40 -2.39 -0.02 2.92 16 35 H 0.09 1.98 6.85 -2.39 -0.02 1.96 16 36 H 0.09 3.35 5.97 -2.39 -0.01 3.33 16 37 H 0.05 1.40 8.02 -2.39 -0.02 1.38 16 38 H 0.40 6.87 9.12 -74.06 -0.68 6.20 16 39 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.05 0.63 8.10 -2.38 -0.02 0.61 16 41 H 0.06 0.64 8.14 -2.38 -0.02 0.63 16 42 H 0.08 1.26 7.57 -2.39 -0.02 1.24 16 43 H 0.10 1.99 7.97 -2.39 -0.02 1.97 16 Total: -1.00 -77.61 348.86 -1.78 -79.39 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.32 Total: 16.69 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 5.85 Total: 15.76 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -6.41 Total: -103.29 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -3.57 Total: -55.97 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -77.61 -1.78 -79.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460105005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.388 kcal (2) G-P(sol) polarization free energy of solvation -77.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds