Wall clock time and date at job start Tue Mar 31 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46985 * 2 1 4 4 C 1.52994 * 109.47379 * 120.00876 * 2 1 3 5 5 N 1.46495 * 109.47326 * 175.00226 * 4 2 1 6 6 C 1.34779 * 120.00513 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99678 * 0.02562 * 6 5 4 8 8 C 1.50691 * 120.00203 * 179.97438 * 6 5 4 9 9 O 1.42903 * 109.47060 * 180.02562 * 8 6 5 10 10 C 1.42895 * 113.99991 * 180.02562 * 9 8 6 11 11 H 1.08999 * 110.54618 * 328.83706 * 10 9 8 12 12 C 1.54816 * 110.48786 * 206.21856 * 10 9 8 13 13 C 1.54994 * 102.09301 * 220.44230 * 12 10 9 14 14 O 1.44381 * 103.49175 * 37.02848 * 13 12 10 15 15 C 1.43752 * 106.96962 * 319.93434 * 14 13 12 16 16 N 1.46501 * 109.46849 * 240.00486 * 2 1 3 17 17 C 1.46495 * 120.00085 * 299.99846 * 16 2 1 18 18 C 1.36942 * 119.99734 * 119.99419 * 16 2 1 19 19 H 1.07997 * 120.00077 * 23.10915 * 18 16 2 20 20 C 1.38811 * 120.00022 * 203.09761 * 18 16 2 21 21 N 1.31624 * 120.00241 * 13.00420 * 20 18 16 22 22 Si 1.86798 * 120.00012 * 193.00904 * 20 18 16 23 23 H 1.48499 * 109.47053 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47238 * 119.99832 * 22 20 18 25 25 H 1.48503 * 109.47215 * 239.99912 * 22 20 18 26 26 H 1.09001 * 109.47131 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47379 * 299.98955 * 1 2 3 28 28 H 1.09002 * 109.47303 * 59.99482 * 1 2 3 29 29 H 1.08993 * 109.47451 * 54.99338 * 4 2 1 30 30 H 1.09006 * 109.46546 * 294.99686 * 4 2 1 31 31 H 0.97008 * 120.00028 * 359.97438 * 5 4 2 32 32 H 1.09002 * 109.47276 * 60.00190 * 8 6 5 33 33 H 1.09000 * 109.47724 * 300.00140 * 8 6 5 34 34 H 1.08998 * 110.90616 * 338.64322 * 12 10 9 35 35 H 1.08998 * 110.90326 * 102.24436 * 12 10 9 36 36 H 1.08999 * 110.61718 * 278.52041 * 13 12 10 37 37 H 1.09004 * 110.61764 * 155.52661 * 13 12 10 38 38 H 1.08995 * 109.87833 * 267.08803 * 15 14 13 39 39 H 1.09003 * 109.99700 * 146.01094 * 15 14 13 40 40 H 1.09008 * 109.47323 * 95.12864 * 17 16 2 41 41 H 1.09004 * 109.47377 * 215.12730 * 17 16 2 42 42 H 1.08998 * 109.47403 * 335.13021 * 17 16 2 43 43 H 0.96995 * 120.00224 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8265 1.1904 6 6 4.1732 -1.4285 2.1909 7 8 3.5701 -1.8837 3.1396 8 6 5.6750 -1.5370 2.1302 9 8 6.1514 -2.2107 3.2969 10 6 7.5712 -2.3664 3.3391 11 1 7.9756 -2.4630 2.3315 12 6 7.9563 -3.5958 4.1977 13 6 9.1921 -3.0749 4.9748 14 8 8.8616 -1.6963 5.2481 15 6 8.2228 -1.1764 4.0699 16 7 2.0183 -0.6905 -1.1963 17 6 1.6644 -2.0930 -1.4282 18 6 2.8054 -0.0249 -2.0977 19 1 3.3700 0.8412 -1.7854 20 6 2.8779 -0.4635 -3.4127 21 7 2.0106 -1.3463 -3.8608 22 14 4.2065 0.1991 -4.5464 23 1 5.0486 1.1727 -3.8060 24 1 5.0523 -0.9230 -5.0267 25 1 3.5743 0.8749 -5.7079 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6054 -1.7199 1.2949 30 1 1.7517 -0.1585 2.1369 31 1 3.9824 -0.4627 0.4314 32 1 6.1099 -0.5386 2.0837 33 1 5.9631 -2.1004 1.2427 34 1 7.1499 -3.8605 4.8816 35 1 8.2227 -4.4432 3.5661 36 1 10.0885 -3.1399 4.3582 37 1 9.3230 -3.6297 5.9039 38 1 8.9636 -0.7053 3.4239 39 1 7.4596 -0.4501 4.3493 40 1 0.7889 -2.1446 -2.0757 41 1 2.5001 -2.6045 -1.9058 42 1 1.4406 -2.5736 -0.4758 43 1 2.0610 -1.6525 -4.7797 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485299288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:37 Heat of formation + Delta-G solvation = -102.698351 kcal Electronic energy + Delta-G solvation = -23234.972709 eV Core-core repulsion = 19702.396113 eV Total energy + Delta-G solvation = -3532.576596 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.99826 -39.20314 -37.21302 -36.50564 -33.79042 -32.11005 -31.65026 -29.53351 -29.12653 -27.95489 -26.07123 -25.07425 -23.11679 -22.93199 -21.54866 -20.14730 -19.34984 -17.52623 -17.19945 -16.93736 -16.42575 -16.09097 -15.68354 -15.36270 -15.16486 -14.88622 -14.23789 -13.91952 -13.71202 -13.11159 -12.88941 -12.79030 -12.54683 -12.43851 -12.29444 -12.12401 -11.75859 -11.69557 -11.46290 -11.12112 -11.00281 -10.89072 -10.79862 -10.46273 -10.31269 -10.16875 -9.95344 -9.82148 -9.67001 -9.46909 -8.66119 -8.55588 -6.85321 -5.81043 -3.29170 2.90939 2.95884 3.29301 3.36060 3.38693 3.64160 4.01223 4.23535 4.39286 4.57426 4.69404 4.84962 4.94489 5.08723 5.15024 5.21116 5.27892 5.31655 5.37656 5.38614 5.43749 5.56573 5.61365 5.75322 5.88921 6.08088 6.16780 6.28671 6.41393 6.51300 6.72798 6.80743 6.83645 6.91251 7.03700 7.32373 7.66445 7.73075 7.97306 8.30212 8.59816 9.14106 9.77361 10.27368 11.22938 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.017615 B = 0.003705 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.172254 B = 7556.318979 C = 8592.198890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.069 0.931 4 C 0.109 3.891 5 N -0.704 5.704 6 C 0.509 3.491 7 O -0.537 6.537 8 C 0.040 3.960 9 O -0.347 6.347 10 C 0.053 3.947 11 H 0.080 0.920 12 C -0.152 4.152 13 C 0.047 3.953 14 O -0.374 6.374 15 C 0.023 3.977 16 N -0.594 5.594 17 C 0.164 3.836 18 C -0.263 4.263 19 H 0.069 0.931 20 C 0.006 3.994 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.290 1.290 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.410 0.590 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.030 0.970 41 H 0.038 0.962 42 H -0.001 1.001 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.816 -1.261 11.635 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.017 4.017 5 N -0.357 5.357 6 C 0.294 3.706 7 O -0.414 6.414 8 C -0.040 4.040 9 O -0.265 6.265 10 C -0.006 4.006 11 H 0.098 0.902 12 C -0.190 4.190 13 C -0.030 4.030 14 O -0.293 6.293 15 C -0.054 4.054 16 N -0.317 5.317 17 C 0.020 3.980 18 C -0.392 4.392 19 H 0.087 0.913 20 C -0.193 4.193 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.217 1.217 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.246 0.754 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.018 0.982 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.281 -1.621 12.469 16.242 hybrid contribution 0.946 0.435 -1.739 2.027 sum 11.227 -1.187 10.729 15.575 Atomic orbital electron populations 1.22186 0.97414 1.01414 1.00610 1.20626 0.92633 0.95503 0.86356 0.91326 1.21957 0.79109 1.01364 0.99264 1.45775 1.08450 1.58598 1.22847 1.20068 0.88685 0.78806 0.83090 1.90692 1.69892 1.47379 1.33454 1.22334 0.93587 0.98402 0.89637 1.88108 1.19660 1.77884 1.40805 1.23598 0.82327 0.95003 0.99683 0.90205 1.23219 0.99030 0.97119 0.99632 1.23553 0.96179 0.82773 1.00462 1.88901 1.78845 1.25401 1.36121 1.23777 0.96951 0.96944 0.87725 1.44000 1.58250 1.08018 1.21464 1.20724 0.99757 0.83343 0.94210 1.19232 1.18975 1.11723 0.89311 0.91303 1.25044 0.98282 0.99419 0.96602 1.70081 1.34990 1.34097 1.15390 0.86235 0.81410 0.78140 0.80985 1.20326 1.21680 1.21743 0.93147 0.93934 0.92181 0.92056 0.92400 0.75368 0.90374 0.89913 0.88807 0.89366 0.91949 0.88507 0.91717 0.88757 0.95179 0.94292 0.98211 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.19 37.16 0.34 -2.39 16 2 C 0.16 2.95 2.87 -67.93 -0.19 2.76 16 3 H 0.07 1.27 7.87 -51.93 -0.41 0.86 16 4 C 0.11 1.90 4.93 -4.05 -0.02 1.88 16 5 N -0.70 -11.76 5.39 -60.30 -0.32 -12.09 16 6 C 0.51 8.64 7.91 -10.99 -0.09 8.55 16 7 O -0.54 -11.21 16.50 -14.36 -0.24 -11.45 16 8 C 0.04 0.52 6.28 36.00 0.23 0.75 16 9 O -0.35 -4.91 9.49 -55.14 -0.52 -5.44 16 10 C 0.05 0.55 3.50 -25.20 -0.09 0.46 16 11 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 12 C -0.15 -1.40 6.90 -24.72 -0.17 -1.57 16 13 C 0.05 0.39 7.72 38.21 0.29 0.69 16 14 O -0.37 -4.35 11.52 -35.23 -0.41 -4.76 16 15 C 0.02 0.24 7.52 37.73 0.28 0.52 16 16 N -0.59 -13.47 2.28 -173.48 -0.40 -13.87 16 17 C 0.16 3.85 8.00 59.84 0.48 4.33 16 18 C -0.26 -6.52 9.31 -15.06 -0.14 -6.66 16 19 H 0.07 1.64 7.82 -52.49 -0.41 1.22 16 20 C 0.01 0.15 5.10 -17.43 -0.09 0.06 16 21 N -0.90 -25.04 10.72 55.49 0.59 -24.45 16 22 Si 0.90 20.44 29.57 -169.99 -5.03 15.41 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.16 6.86 -51.93 -0.36 0.81 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.41 6.71 7.89 -40.82 -0.32 6.39 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.95 8.11 -51.93 -0.42 0.52 16 34 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.04 7.97 -51.93 -0.41 0.62 16 40 H 0.03 0.77 7.34 -51.92 -0.38 0.39 16 41 H 0.04 0.98 7.35 -51.93 -0.38 0.60 16 42 H 0.00 -0.01 6.53 -51.93 -0.34 -0.35 16 43 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -31.55 350.85 -7.37 -38.93 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.18 Total: 3.04 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 0.84 Total: 9.39 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.13 Total: -50.40 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.17 Total: -21.65 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.55 -7.37 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485299288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.772 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds