Wall clock time and date at job start Tue Mar 31 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46985 * 2 1 4 4 C 1.52994 * 109.47379 * 120.00876 * 2 1 3 5 5 N 1.46495 * 109.47326 * 175.00226 * 4 2 1 6 6 C 1.34779 * 120.00513 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99678 * 0.02562 * 6 5 4 8 8 C 1.50691 * 120.00203 * 179.97438 * 6 5 4 9 9 O 1.42903 * 109.47060 * 180.02562 * 8 6 5 10 10 C 1.42895 * 113.99991 * 180.02562 * 9 8 6 11 11 H 1.08999 * 110.54618 * 328.83706 * 10 9 8 12 12 C 1.54816 * 110.48786 * 206.21856 * 10 9 8 13 13 C 1.54994 * 102.09301 * 220.44230 * 12 10 9 14 14 O 1.44381 * 103.49175 * 37.02848 * 13 12 10 15 15 C 1.43752 * 106.96962 * 319.93434 * 14 13 12 16 16 N 1.46501 * 109.46849 * 240.00486 * 2 1 3 17 17 C 1.46495 * 120.00085 * 299.99846 * 16 2 1 18 18 C 1.36942 * 119.99734 * 119.99419 * 16 2 1 19 19 H 1.07997 * 120.00077 * 23.10915 * 18 16 2 20 20 C 1.38811 * 120.00022 * 203.09761 * 18 16 2 21 21 N 1.31624 * 120.00241 * 13.00420 * 20 18 16 22 22 Si 1.86798 * 120.00012 * 193.00904 * 20 18 16 23 23 H 1.48499 * 109.47053 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47238 * 119.99832 * 22 20 18 25 25 H 1.48503 * 109.47215 * 239.99912 * 22 20 18 26 26 H 1.09001 * 109.47131 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47379 * 299.98955 * 1 2 3 28 28 H 1.09002 * 109.47303 * 59.99482 * 1 2 3 29 29 H 1.08993 * 109.47451 * 54.99338 * 4 2 1 30 30 H 1.09006 * 109.46546 * 294.99686 * 4 2 1 31 31 H 0.97008 * 120.00028 * 359.97438 * 5 4 2 32 32 H 1.09002 * 109.47276 * 60.00190 * 8 6 5 33 33 H 1.09000 * 109.47724 * 300.00140 * 8 6 5 34 34 H 1.08998 * 110.90616 * 338.64322 * 12 10 9 35 35 H 1.08998 * 110.90326 * 102.24436 * 12 10 9 36 36 H 1.08999 * 110.61718 * 278.52041 * 13 12 10 37 37 H 1.09004 * 110.61764 * 155.52661 * 13 12 10 38 38 H 1.08995 * 109.87833 * 267.08803 * 15 14 13 39 39 H 1.09003 * 109.99700 * 146.01094 * 15 14 13 40 40 H 1.09008 * 109.47323 * 95.12864 * 17 16 2 41 41 H 1.09004 * 109.47377 * 215.12730 * 17 16 2 42 42 H 1.08998 * 109.47403 * 335.13021 * 17 16 2 43 43 H 0.96995 * 120.00224 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8265 1.1904 6 6 4.1732 -1.4285 2.1909 7 8 3.5701 -1.8837 3.1396 8 6 5.6750 -1.5370 2.1302 9 8 6.1514 -2.2107 3.2969 10 6 7.5712 -2.3664 3.3391 11 1 7.9756 -2.4630 2.3315 12 6 7.9563 -3.5958 4.1977 13 6 9.1921 -3.0749 4.9748 14 8 8.8616 -1.6963 5.2481 15 6 8.2228 -1.1764 4.0699 16 7 2.0183 -0.6905 -1.1963 17 6 1.6644 -2.0930 -1.4282 18 6 2.8054 -0.0249 -2.0977 19 1 3.3700 0.8412 -1.7854 20 6 2.8779 -0.4635 -3.4127 21 7 2.0106 -1.3463 -3.8608 22 14 4.2065 0.1991 -4.5464 23 1 5.0486 1.1727 -3.8060 24 1 5.0523 -0.9230 -5.0267 25 1 3.5743 0.8749 -5.7079 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6054 -1.7199 1.2949 30 1 1.7517 -0.1585 2.1369 31 1 3.9824 -0.4627 0.4314 32 1 6.1099 -0.5386 2.0837 33 1 5.9631 -2.1004 1.2427 34 1 7.1499 -3.8605 4.8816 35 1 8.2227 -4.4432 3.5661 36 1 10.0885 -3.1399 4.3582 37 1 9.3230 -3.6297 5.9039 38 1 8.9636 -0.7053 3.4239 39 1 7.4596 -0.4501 4.3493 40 1 0.7889 -2.1446 -2.0757 41 1 2.5001 -2.6045 -1.9058 42 1 1.4406 -2.5736 -0.4758 43 1 2.0610 -1.6525 -4.7797 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485299288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:37 Heat of formation + Delta-G solvation = -124.317452 kcal Electronic energy + Delta-G solvation = -23235.910184 eV Core-core repulsion = 19702.396113 eV Total energy + Delta-G solvation = -3533.514070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98981 -40.34235 -38.53124 -37.80229 -35.40115 -33.76268 -32.46676 -31.22592 -29.99069 -29.03466 -28.00569 -26.39893 -24.87601 -23.69188 -22.32048 -21.47711 -20.94300 -18.86298 -18.40918 -18.21306 -17.44009 -17.16946 -17.07876 -16.57181 -16.39941 -15.88306 -15.79709 -15.19846 -15.03913 -14.55848 -14.49619 -13.92905 -13.87424 -13.54858 -13.49749 -13.17689 -13.06729 -12.85603 -12.72497 -12.66565 -12.52366 -12.39017 -12.25670 -12.04538 -11.76961 -11.71986 -11.49336 -10.96998 -10.85018 -10.61413 -10.48267 -9.97041 -8.76347 -7.77022 -5.26265 1.50870 1.53659 1.61615 1.62275 1.87198 2.54565 2.90196 3.01891 3.38209 3.49126 3.64646 3.81211 3.87488 4.02409 4.06685 4.18311 4.21319 4.27975 4.37154 4.38179 4.55981 4.61070 4.72722 4.73023 4.76704 4.80320 4.90227 4.93894 5.04123 5.04718 5.23737 5.35828 5.42465 5.57461 5.71343 5.75496 5.80520 6.07780 6.37020 6.65327 7.18716 7.28355 7.90151 8.36722 9.26479 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.017615 B = 0.003705 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.172254 B = 7556.318979 C = 8592.198890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.158 3.842 3 H 0.078 0.922 4 C 0.118 3.882 5 N -0.701 5.701 6 C 0.505 3.495 7 O -0.582 6.582 8 C 0.045 3.955 9 O -0.378 6.378 10 C 0.046 3.954 11 H 0.106 0.894 12 C -0.153 4.153 13 C 0.046 3.954 14 O -0.403 6.403 15 C 0.022 3.978 16 N -0.603 5.603 17 C 0.185 3.815 18 C -0.256 4.256 19 H 0.084 0.916 20 C -0.052 4.052 21 N -0.939 5.939 22 Si 0.965 3.035 23 H -0.257 1.257 24 H -0.297 1.297 25 H -0.302 1.302 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.414 0.586 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.001 0.999 41 H 0.013 0.987 42 H 0.018 0.982 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.738 -0.317 12.110 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.051 3.949 3 H 0.096 0.904 4 C -0.008 4.008 5 N -0.353 5.353 6 C 0.292 3.708 7 O -0.462 6.462 8 C -0.034 4.034 9 O -0.297 6.297 10 C -0.012 4.012 11 H 0.124 0.876 12 C -0.191 4.191 13 C -0.030 4.030 14 O -0.322 6.322 15 C -0.055 4.055 16 N -0.326 5.326 17 C 0.039 3.961 18 C -0.386 4.386 19 H 0.102 0.898 20 C -0.247 4.247 21 N -0.586 5.586 22 Si 0.794 3.206 23 H -0.181 1.181 24 H -0.224 1.224 25 H -0.230 1.230 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.251 0.749 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.019 0.981 41 H 0.032 0.968 42 H 0.036 0.964 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.225 -0.644 12.969 17.834 hybrid contribution 0.326 0.149 -1.792 1.828 sum 12.551 -0.495 11.177 16.813 Atomic orbital electron populations 1.22086 0.96291 1.01190 1.01377 1.20777 0.93457 0.95627 0.85079 0.90416 1.21769 0.79762 1.00369 0.98913 1.45769 1.08126 1.58451 1.22975 1.20798 0.90474 0.77486 0.82047 1.90669 1.71211 1.49234 1.35109 1.22358 0.90490 1.00418 0.90104 1.88075 1.21984 1.78247 1.41408 1.23870 0.80540 0.95475 1.01278 0.87594 1.23262 0.98714 0.97583 0.99539 1.23748 0.96494 0.81323 1.01406 1.88864 1.79111 1.27060 1.37185 1.23832 0.97232 0.96723 0.87701 1.44153 1.58399 1.07844 1.22201 1.20366 0.97412 0.84162 0.94125 1.19654 1.18336 1.11265 0.89352 0.89798 1.25778 1.00348 1.00319 0.98301 1.70256 1.37023 1.36146 1.15209 0.85239 0.79093 0.77467 0.78805 1.18108 1.22438 1.23026 0.93912 0.90560 0.93943 0.93696 0.90980 0.74946 0.87350 0.87968 0.91063 0.87281 0.89640 0.87486 0.89369 0.90206 0.98094 0.96784 0.96383 0.94639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.19 71.98 0.66 -4.34 16 2 C 0.16 5.65 2.87 44.99 0.13 5.78 16 3 H 0.08 2.67 7.87 -2.38 -0.02 2.65 16 4 C 0.12 3.93 4.93 86.38 0.43 4.35 16 5 N -0.70 -22.22 5.39 -463.08 -2.49 -24.71 16 6 C 0.51 16.49 7.91 87.65 0.69 17.19 16 7 O -0.58 -24.13 16.50 15.99 0.26 -23.87 16 8 C 0.05 1.08 6.28 71.23 0.45 1.53 16 9 O -0.38 -10.21 9.49 -129.94 -1.23 -11.44 16 10 C 0.05 0.86 3.50 31.59 0.11 0.97 16 11 H 0.11 1.40 7.86 -2.39 -0.02 1.38 16 12 C -0.15 -2.56 6.90 31.90 0.22 -2.34 16 13 C 0.05 0.68 7.72 72.66 0.56 1.24 16 14 O -0.40 -8.81 11.52 -148.98 -1.72 -10.53 16 15 C 0.02 0.41 7.52 72.35 0.54 0.96 16 16 N -0.60 -26.84 2.28 -702.78 -1.61 -28.44 16 17 C 0.18 8.74 8.00 127.77 1.02 9.77 16 18 C -0.26 -12.37 9.31 84.03 0.78 -11.58 16 19 H 0.08 3.76 7.82 -2.91 -0.02 3.73 16 20 C -0.05 -2.71 5.10 84.86 0.43 -2.27 16 21 N -0.94 -53.12 10.72 21.65 0.23 -52.89 16 22 Si 0.96 41.63 29.57 68.60 2.03 43.66 16 23 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 24 H -0.30 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 26 H 0.04 1.48 7.67 -2.39 -0.02 1.46 16 27 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 29 H 0.04 1.66 6.86 -2.39 -0.02 1.64 16 30 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.41 12.59 7.89 -92.70 -0.73 11.86 16 32 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.10 2.03 8.11 -2.39 -0.02 2.01 16 34 H 0.07 1.50 8.09 -2.39 -0.02 1.48 16 35 H 0.11 1.31 8.14 -2.39 -0.02 1.30 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.68 7.97 -2.39 -0.02 1.66 16 40 H 0.00 0.04 7.34 -2.38 -0.02 0.02 16 41 H 0.01 0.70 7.35 -2.39 -0.02 0.68 16 42 H 0.02 0.76 6.53 -2.39 -0.02 0.75 16 43 H 0.24 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -68.91 350.85 1.77 -67.15 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.26 Total: 19.84 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 6.03 Total: 21.24 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -3.87 Total: -106.04 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -2.69 Total: -45.84 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -68.91 1.77 -67.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485299288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.172 kcal (2) G-P(sol) polarization free energy of solvation -68.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds