Wall clock time and date at job start Tue Mar 31 2020 02:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 C 1.53005 * 109.46913 * 119.99702 * 2 1 3 5 5 C 1.53003 * 109.46696 * 184.99891 * 4 2 1 6 6 C 1.53005 * 109.46696 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.46904 * 180.02562 * 6 5 4 8 8 C 1.36931 * 119.99788 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00438 * 0.02562 * 8 7 6 10 10 C 1.38817 * 119.99680 * 179.72358 * 8 7 6 11 11 N 1.31614 * 119.99888 * 0.27479 * 10 8 7 12 12 Si 1.86803 * 119.99862 * 180.27671 * 10 8 7 13 13 H 1.48498 * 109.47174 * 90.00121 * 12 10 8 14 14 H 1.48501 * 109.47062 * 210.00072 * 12 10 8 15 15 H 1.48504 * 109.46913 * 329.99871 * 12 10 8 16 16 N 1.46495 * 109.47117 * 239.99544 * 2 1 3 17 17 C 1.34775 * 119.99841 * 85.00162 * 16 2 1 18 18 O 1.21284 * 120.00211 * 359.97438 * 17 16 2 19 19 C 1.50703 * 119.99971 * 179.97438 * 17 16 2 20 20 H 1.08999 * 109.52738 * 305.13548 * 19 17 16 21 21 C 1.53143 * 109.52215 * 65.32714 * 19 17 16 22 22 O 1.43073 * 109.15370 * 175.21104 * 21 19 17 23 23 C 1.43070 * 113.59575 * 302.05227 * 22 21 19 24 24 C 1.53143 * 109.15151 * 57.94652 * 23 22 21 25 25 O 1.43072 * 109.15144 * 304.69016 * 24 23 22 26 26 H 1.09000 * 109.47476 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46775 * 300.00270 * 1 2 3 28 28 H 1.09001 * 109.46990 * 60.00110 * 1 2 3 29 29 H 1.08995 * 109.47418 * 65.00237 * 4 2 1 30 30 H 1.09001 * 109.47199 * 304.99778 * 4 2 1 31 31 H 1.09003 * 109.47221 * 60.00555 * 5 4 2 32 32 H 1.08993 * 109.47355 * 300.00167 * 5 4 2 33 33 H 1.09003 * 109.46946 * 60.00823 * 6 5 4 34 34 H 1.08993 * 109.47679 * 300.00366 * 6 5 4 35 35 H 0.97000 * 119.99792 * 0.02562 * 7 6 5 36 36 H 0.97005 * 119.99715 * 179.97438 * 11 10 8 37 37 H 0.96997 * 120.00184 * 264.99946 * 16 2 1 38 38 H 1.09004 * 109.52769 * 295.11574 * 21 19 17 39 39 H 1.09002 * 109.52291 * 55.31214 * 21 19 17 40 40 H 1.08998 * 109.52587 * 298.04918 * 23 22 21 41 41 H 1.08994 * 109.52818 * 177.84739 * 23 22 21 42 42 H 1.09004 * 109.52769 * 184.78895 * 24 23 22 43 43 H 1.09001 * 109.57927 * 64.62556 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0747 -1.3339 2.5634 7 7 5.5348 -1.2300 2.6254 8 6 6.2185 -1.8041 3.6637 9 1 5.6815 -2.3338 4.4367 10 6 7.6024 -1.7106 3.7194 11 7 8.2568 -1.0655 2.7771 12 14 8.5358 -2.5003 5.1317 13 1 8.8929 -3.8956 4.7701 14 1 9.7742 -1.7263 5.4008 15 1 7.6822 -2.5068 6.3469 16 7 2.0183 -0.6907 -1.1961 17 6 2.1471 -0.0184 -2.3571 18 8 1.8582 1.1583 -2.4117 19 6 2.6499 -0.7287 -3.5874 20 1 3.6091 -1.1987 -3.3702 21 6 1.6386 -1.7982 -4.0101 22 8 2.0681 -2.3906 -5.2396 23 6 2.2275 -1.4483 -6.3043 24 6 3.2388 -0.3788 -5.8816 25 8 2.8092 0.2136 -4.6521 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7517 -1.7714 1.2058 30 1 1.6054 -0.2616 2.1370 31 1 3.8532 0.4370 1.3574 32 1 3.9994 -1.0727 0.4261 33 1 3.7864 -2.3842 2.5202 34 1 3.6401 -0.8741 3.4509 35 1 6.0171 -0.7546 1.9310 36 1 9.2238 -0.9998 2.8163 37 1 2.2490 -1.6318 -1.1525 38 1 1.5758 -2.5656 -3.2385 39 1 0.6598 -1.3392 -4.1493 40 1 1.2685 -0.9775 -6.5207 41 1 2.5912 -1.9620 -7.1941 42 1 3.3016 0.3886 -6.6532 43 1 4.2181 -0.8367 -5.7427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485713037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:49 Heat of formation + Delta-G solvation = -125.401837 kcal Electronic energy + Delta-G solvation = -22915.966901 eV Core-core repulsion = 19382.405808 eV Total energy + Delta-G solvation = -3533.561093 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77081 -39.32141 -36.88680 -36.22598 -34.84633 -32.97924 -32.06832 -30.86253 -29.42463 -28.34618 -25.72561 -25.36552 -23.16456 -22.37857 -21.17231 -20.80366 -20.57797 -17.92128 -17.30985 -17.02430 -16.92575 -16.37636 -15.95422 -15.75695 -15.10099 -14.66242 -14.58071 -14.32850 -13.87253 -13.69854 -13.51871 -13.38974 -12.98719 -12.81753 -12.55784 -12.23842 -12.12399 -11.99843 -11.33248 -11.20196 -11.18965 -10.98182 -10.86102 -10.81158 -10.48339 -10.41474 -10.01538 -9.89589 -9.68840 -9.55131 -9.19593 -8.86362 -6.91230 -5.75569 -3.04377 2.39343 2.57564 3.25880 3.43826 3.48641 3.50772 3.63170 4.11970 4.40880 4.52038 4.56735 4.57353 4.70898 4.74104 4.85595 5.00483 5.02784 5.12301 5.16083 5.33699 5.37016 5.39610 5.52750 5.57861 5.60206 5.75785 5.92431 6.03533 6.08824 6.18787 6.34568 6.38231 6.40380 6.48752 6.57205 6.85973 6.89355 7.32784 7.70203 8.05258 8.43448 9.54222 10.13228 10.47451 11.47412 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.017804 B = 0.003107 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.293246 B = 9009.085749 C = 9970.801396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.090 0.910 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.717 5.717 17 C 0.524 3.476 18 O -0.517 6.517 19 C 0.035 3.965 20 H 0.098 0.902 21 C 0.039 3.961 22 O -0.373 6.373 23 C 0.021 3.979 24 C 0.022 3.978 25 O -0.350 6.350 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.401 0.599 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.894 -1.469 -16.582 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.582 5.582 12 Si 0.739 3.261 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.371 5.371 17 C 0.308 3.692 18 O -0.391 6.391 19 C -0.027 4.027 20 H 0.116 0.884 21 C -0.039 4.039 22 O -0.291 6.291 23 C -0.056 4.056 24 C -0.055 4.055 25 O -0.268 6.268 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.236 0.764 38 H 0.130 0.870 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.069 -0.671 -16.461 23.722 hybrid contribution 0.988 -0.740 0.500 1.332 sum -16.081 -1.412 -15.960 22.701 Atomic orbital electron populations 1.22180 0.95299 1.02075 1.02539 1.21089 0.93671 0.97887 0.83526 0.89170 1.21857 0.96922 1.00804 0.96513 1.21745 0.93609 1.01542 0.99544 1.20647 0.86200 0.96425 0.94192 1.42387 1.00220 1.66234 1.29062 1.19242 0.89431 1.27120 1.01332 0.91213 1.24758 0.96453 1.01226 0.98677 1.69665 1.07178 1.46931 1.34477 0.86181 0.79514 0.78673 0.81778 1.21720 1.21752 1.20760 1.46016 1.67561 1.14186 1.09344 1.19851 0.78193 0.87326 0.83819 1.90732 1.48277 1.15472 1.84596 1.22620 1.00799 0.90944 0.88300 0.88443 1.23134 0.96532 0.96261 0.87929 1.88131 1.88542 1.33126 1.19323 1.23326 0.99602 0.91845 0.90823 1.23362 0.97468 0.97538 0.87112 1.88234 1.88544 1.31467 1.18581 0.92421 0.91380 0.92327 0.91312 0.90112 0.91896 0.92080 0.96564 0.96486 0.78334 0.93514 0.76382 0.87029 0.91444 0.91848 0.87364 0.87137 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 2 C 0.14 1.57 2.57 -67.93 -0.17 1.39 16 3 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 4 C -0.12 -1.38 4.75 -26.73 -0.13 -1.51 16 5 C -0.13 -1.96 5.22 -26.73 -0.14 -2.10 16 6 C 0.15 3.04 6.26 -4.04 -0.03 3.01 16 7 N -0.74 -19.00 5.60 -59.90 -0.34 -19.33 16 8 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 9 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 11 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 12 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 N -0.72 -7.47 4.50 -53.80 -0.24 -7.72 16 17 C 0.52 6.70 7.14 -10.98 -0.08 6.62 16 18 O -0.52 -8.80 16.17 -14.26 -0.23 -9.03 16 19 C 0.04 0.38 3.26 -27.81 -0.09 0.29 16 20 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 21 C 0.04 0.34 6.29 37.23 0.23 0.57 16 22 O -0.37 -3.54 10.85 -48.80 -0.53 -4.07 16 23 C 0.02 0.15 7.05 37.23 0.26 0.42 16 24 C 0.02 0.18 7.05 37.23 0.26 0.45 16 25 O -0.35 -4.36 10.03 -62.50 -0.63 -4.99 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.95 7.75 -51.93 -0.40 0.55 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.40 3.25 8.54 -40.82 -0.35 2.90 16 38 H 0.11 0.71 8.08 -51.93 -0.42 0.29 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -35.57 355.39 -8.02 -43.59 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.34 Total: 6.14 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 0.23 Total: 0.44 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.15 Total: -55.00 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.39 Total: -18.09 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.57 -8.02 -43.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485713037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.811 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds