Wall clock time and date at job start Tue Mar 31 2020 02:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 C 1.53005 * 109.46913 * 119.99702 * 2 1 3 5 5 C 1.53003 * 109.46696 * 184.99891 * 4 2 1 6 6 C 1.53005 * 109.46696 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.46904 * 180.02562 * 6 5 4 8 8 C 1.36931 * 119.99788 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00438 * 0.02562 * 8 7 6 10 10 C 1.38817 * 119.99680 * 179.72358 * 8 7 6 11 11 N 1.31614 * 119.99888 * 0.27479 * 10 8 7 12 12 Si 1.86803 * 119.99862 * 180.27671 * 10 8 7 13 13 H 1.48498 * 109.47174 * 90.00121 * 12 10 8 14 14 H 1.48501 * 109.47062 * 210.00072 * 12 10 8 15 15 H 1.48504 * 109.46913 * 329.99871 * 12 10 8 16 16 N 1.46495 * 109.47117 * 239.99544 * 2 1 3 17 17 C 1.34775 * 119.99841 * 85.00162 * 16 2 1 18 18 O 1.21284 * 120.00211 * 359.97438 * 17 16 2 19 19 C 1.50703 * 119.99971 * 179.97438 * 17 16 2 20 20 H 1.08999 * 109.52738 * 305.13548 * 19 17 16 21 21 C 1.53143 * 109.52215 * 65.32714 * 19 17 16 22 22 O 1.43073 * 109.15370 * 175.21104 * 21 19 17 23 23 C 1.43070 * 113.59575 * 302.05227 * 22 21 19 24 24 C 1.53143 * 109.15151 * 57.94652 * 23 22 21 25 25 O 1.43072 * 109.15144 * 304.69016 * 24 23 22 26 26 H 1.09000 * 109.47476 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46775 * 300.00270 * 1 2 3 28 28 H 1.09001 * 109.46990 * 60.00110 * 1 2 3 29 29 H 1.08995 * 109.47418 * 65.00237 * 4 2 1 30 30 H 1.09001 * 109.47199 * 304.99778 * 4 2 1 31 31 H 1.09003 * 109.47221 * 60.00555 * 5 4 2 32 32 H 1.08993 * 109.47355 * 300.00167 * 5 4 2 33 33 H 1.09003 * 109.46946 * 60.00823 * 6 5 4 34 34 H 1.08993 * 109.47679 * 300.00366 * 6 5 4 35 35 H 0.97000 * 119.99792 * 0.02562 * 7 6 5 36 36 H 0.97005 * 119.99715 * 179.97438 * 11 10 8 37 37 H 0.96997 * 120.00184 * 264.99946 * 16 2 1 38 38 H 1.09004 * 109.52769 * 295.11574 * 21 19 17 39 39 H 1.09002 * 109.52291 * 55.31214 * 21 19 17 40 40 H 1.08998 * 109.52587 * 298.04918 * 23 22 21 41 41 H 1.08994 * 109.52818 * 177.84739 * 23 22 21 42 42 H 1.09004 * 109.52769 * 184.78895 * 24 23 22 43 43 H 1.09001 * 109.57927 * 64.62556 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0747 -1.3339 2.5634 7 7 5.5348 -1.2300 2.6254 8 6 6.2185 -1.8041 3.6637 9 1 5.6815 -2.3338 4.4367 10 6 7.6024 -1.7106 3.7194 11 7 8.2568 -1.0655 2.7771 12 14 8.5358 -2.5003 5.1317 13 1 8.8929 -3.8956 4.7701 14 1 9.7742 -1.7263 5.4008 15 1 7.6822 -2.5068 6.3469 16 7 2.0183 -0.6907 -1.1961 17 6 2.1471 -0.0184 -2.3571 18 8 1.8582 1.1583 -2.4117 19 6 2.6499 -0.7287 -3.5874 20 1 3.6091 -1.1987 -3.3702 21 6 1.6386 -1.7982 -4.0101 22 8 2.0681 -2.3906 -5.2396 23 6 2.2275 -1.4483 -6.3043 24 6 3.2388 -0.3788 -5.8816 25 8 2.8092 0.2136 -4.6521 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7517 -1.7714 1.2058 30 1 1.6054 -0.2616 2.1370 31 1 3.8532 0.4370 1.3574 32 1 3.9994 -1.0727 0.4261 33 1 3.7864 -2.3842 2.5202 34 1 3.6401 -0.8741 3.4509 35 1 6.0171 -0.7546 1.9310 36 1 9.2238 -0.9998 2.8163 37 1 2.2490 -1.6318 -1.1525 38 1 1.5758 -2.5656 -3.2385 39 1 0.6598 -1.3392 -4.1493 40 1 1.2685 -0.9775 -6.5207 41 1 2.5912 -1.9620 -7.1941 42 1 3.3016 0.3886 -6.6532 43 1 4.2181 -0.8367 -5.7427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485713037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:48 Heat of formation + Delta-G solvation = -151.502508 kcal Electronic energy + Delta-G solvation = -22917.098711 eV Core-core repulsion = 19382.405808 eV Total energy + Delta-G solvation = -3534.692903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62056 -40.18904 -37.99650 -37.08961 -36.47728 -34.31321 -33.33591 -32.02619 -30.80148 -29.07991 -27.22649 -26.14255 -24.82095 -23.26483 -22.39603 -21.94493 -21.52398 -19.13915 -18.76918 -18.13591 -17.69956 -17.08269 -16.86274 -16.65384 -16.48546 -15.91281 -15.80834 -15.48128 -15.27581 -15.11540 -14.63284 -14.40361 -14.18954 -13.85674 -13.43998 -13.30340 -13.15090 -13.01663 -12.77001 -12.65892 -12.38414 -12.24920 -12.07875 -11.95810 -11.85694 -11.72529 -11.62349 -11.49709 -10.93253 -10.86740 -10.31601 -10.14821 -9.00792 -7.95955 -5.25333 1.41835 1.47107 1.49292 1.57821 1.73594 2.55840 2.62373 2.87882 3.37898 3.40176 3.57324 3.69435 3.81946 3.93884 3.98510 4.10609 4.11754 4.22913 4.29194 4.41086 4.45298 4.51148 4.59164 4.68245 4.76078 4.77763 4.83745 4.87298 4.92777 5.00618 5.12822 5.32294 5.35856 5.43668 5.50744 5.53243 5.82878 5.86233 6.26605 6.46042 7.12891 7.32068 8.09632 8.31249 9.27884 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.017804 B = 0.003107 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.293246 B = 9009.085749 C = 9970.801396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.062 0.938 4 C -0.108 4.108 5 C -0.115 4.115 6 C 0.150 3.850 7 N -0.752 5.752 8 C -0.247 4.247 9 H 0.078 0.922 10 C -0.079 4.079 11 N -0.972 5.972 12 Si 0.976 3.024 13 H -0.284 1.284 14 H -0.296 1.296 15 H -0.268 1.268 16 N -0.704 5.704 17 C 0.522 3.478 18 O -0.567 6.567 19 C 0.035 3.965 20 H 0.105 0.895 21 C 0.045 3.955 22 O -0.385 6.385 23 C 0.020 3.980 24 C 0.016 3.984 25 O -0.385 6.385 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.028 0.972 34 H 0.019 0.981 35 H 0.371 0.629 36 H 0.251 0.749 37 H 0.416 0.584 38 H 0.136 0.864 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.134 0.866 42 H 0.127 0.873 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.138 -3.292 -16.288 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.039 3.961 3 H 0.080 0.920 4 C -0.146 4.146 5 C -0.153 4.153 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.379 4.379 9 H 0.096 0.904 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.805 3.195 13 H -0.211 1.211 14 H -0.223 1.223 15 H -0.193 1.193 16 N -0.358 5.358 17 C 0.307 3.693 18 O -0.445 6.445 19 C -0.026 4.026 20 H 0.122 0.878 21 C -0.033 4.033 22 O -0.304 6.304 23 C -0.057 4.057 24 C -0.060 4.060 25 O -0.304 6.304 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.203 0.797 36 H 0.060 0.940 37 H 0.253 0.747 38 H 0.154 0.846 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.152 0.848 42 H 0.145 0.855 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.360 -2.547 -16.149 24.584 hybrid contribution 1.340 -0.158 0.384 1.402 sum -17.021 -2.705 -15.765 23.357 Atomic orbital electron populations 1.22103 0.93459 1.03363 1.02351 1.21023 0.95007 0.96486 0.83537 0.91971 1.21758 0.93403 1.02491 0.96984 1.21617 0.96637 0.99649 0.97392 1.20867 0.83066 0.97513 0.96185 1.42675 1.02652 1.65913 1.28193 1.19683 0.90001 1.26350 1.01836 0.90439 1.25632 0.97552 1.02452 1.01467 1.69830 1.07047 1.48827 1.36581 0.85101 0.77816 0.77543 0.79075 1.21143 1.22292 1.19290 1.45951 1.66520 1.14740 1.08613 1.20281 0.77368 0.86798 0.84818 1.90704 1.50735 1.17653 1.85444 1.22684 1.01678 0.90928 0.87315 0.87754 1.23175 0.95472 0.96150 0.88472 1.88113 1.88547 1.33913 1.19789 1.23485 0.99552 0.91574 0.91065 1.23609 0.97858 0.98430 0.86113 1.88184 1.88949 1.33215 1.20076 0.90321 0.90251 0.93895 0.88845 0.88979 0.93780 0.92273 0.95400 0.96271 0.79747 0.94016 0.74716 0.84608 0.91699 0.91610 0.84835 0.85490 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.48 71.98 0.68 -1.92 16 2 C 0.14 3.00 2.57 44.99 0.12 3.11 16 3 H 0.06 1.68 7.58 -2.39 -0.02 1.67 16 4 C -0.11 -2.18 4.75 30.60 0.15 -2.04 16 5 C -0.11 -3.45 5.22 30.60 0.16 -3.29 16 6 C 0.15 5.76 6.26 86.38 0.54 6.30 16 7 N -0.75 -38.83 5.60 -343.44 -1.92 -40.76 16 8 C -0.25 -13.95 9.99 84.04 0.84 -13.11 16 9 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 10 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 11 N -0.97 -60.49 13.06 21.65 0.28 -60.21 16 12 Si 0.98 46.29 29.55 68.60 2.03 48.32 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 16 N -0.70 -13.89 4.50 -442.53 -1.99 -15.88 16 17 C 0.52 13.38 7.14 87.66 0.63 14.00 16 18 O -0.57 -20.04 16.17 15.90 0.26 -19.78 16 19 C 0.04 0.75 3.26 29.90 0.10 0.85 16 20 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 21 C 0.04 0.71 6.29 72.03 0.45 1.16 16 22 O -0.38 -6.64 10.85 -136.00 -1.48 -8.11 16 23 C 0.02 0.26 7.05 72.03 0.51 0.77 16 24 C 0.02 0.25 7.05 72.03 0.51 0.76 16 25 O -0.39 -9.66 10.03 -122.90 -1.23 -10.89 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.79 7.75 -2.39 -0.02 1.77 16 33 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.37 20.59 7.67 -92.71 -0.71 19.88 16 36 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 37 H 0.42 5.81 8.54 -92.71 -0.79 5.02 16 38 H 0.14 1.39 8.08 -2.38 -0.02 1.38 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.13 1.03 8.14 -2.39 -0.02 1.02 16 42 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -77.71 355.39 0.59 -77.12 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -0.50 Total: 27.73 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.14 Total: 2.46 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -3.63 Total: -116.84 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -2.45 Total: -38.79 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -77.71 0.59 -77.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485713037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.381 kcal (2) G-P(sol) polarization free energy of solvation -77.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds