Wall clock time and date at job start Tue Mar 31 2020 02:48:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.36947 * 119.99790 * 2 1
4 4 H 1.08002 * 119.99832 * 325.51945 * 3 2 1
5 5 C 1.38813 * 120.00069 * 145.52870 * 3 2 1
6 6 N 1.31615 * 120.00014 * 158.62856 * 5 3 2
7 7 Si 1.86803 * 119.99701 * 338.62713 * 5 3 2
8 8 H 1.48493 * 109.47182 * 90.93053 * 7 5 3
9 9 H 1.48507 * 109.46859 * 210.93313 * 7 5 3
10 10 H 1.48494 * 109.47066 * 330.92660 * 7 5 3
11 11 C 1.46496 * 120.00614 * 179.97438 * 2 1 3
12 12 C 1.53008 * 109.46962 * 89.99817 * 11 2 1
13 13 H 1.09003 * 109.46808 * 60.00493 * 12 11 2
14 14 O 1.42903 * 109.47031 * 300.00544 * 12 11 2
15 15 C 1.53001 * 109.46796 * 180.02562 * 12 11 2
16 16 N 1.46503 * 109.46819 * 185.00414 * 15 12 11
17 17 C 1.46500 * 119.99625 * 269.72224 * 16 15 12
18 18 C 1.34779 * 120.00364 * 89.99427 * 16 15 12
19 19 O 1.21283 * 119.99747 * 355.37088 * 18 16 15
20 20 C 1.50690 * 120.00058 * 175.36335 * 18 16 15
21 21 H 1.09002 * 110.33412 * 51.82629 * 20 18 16
22 22 C 1.54484 * 110.37350 * 289.57806 * 20 18 16
23 23 C 1.54513 * 104.06326 * 217.18846 * 22 20 18
24 24 C 1.54482 * 104.06232 * 359.97438 * 23 22 20
25 25 O 1.44422 * 104.80166 * 23.97844 * 24 23 22
26 26 H 1.09001 * 109.46994 * 275.08939 * 1 2 3
27 27 H 1.09002 * 109.47002 * 35.09180 * 1 2 3
28 28 H 1.08999 * 109.46833 * 155.09258 * 1 2 3
29 29 H 0.96998 * 119.99791 * 179.97438 * 6 5 3
30 30 H 1.09003 * 109.46957 * 330.00401 * 11 2 1
31 31 H 1.08995 * 109.47907 * 210.00392 * 11 2 1
32 32 H 0.96703 * 114.00095 * 299.99760 * 14 12 11
33 33 H 1.08996 * 109.47527 * 65.00379 * 15 12 11
34 34 H 1.09005 * 109.47298 * 304.99575 * 15 12 11
35 35 H 1.09001 * 109.47299 * 85.95412 * 17 16 15
36 36 H 1.09005 * 109.47360 * 205.95416 * 17 16 15
37 37 H 1.08997 * 109.47566 * 325.95410 * 17 16 15
38 38 H 1.08993 * 110.51271 * 335.83647 * 22 20 18
39 39 H 1.09005 * 110.51303 * 98.54727 * 22 20 18
40 40 H 1.08996 * 110.51110 * 118.64252 * 23 22 20
41 41 H 1.08998 * 110.51145 * 241.21984 * 23 22 20
42 42 H 1.09000 * 110.36907 * 142.80837 * 24 23 22
43 43 H 1.08995 * 110.37314 * 265.03533 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1860 0.0000
4 1 1.7519 2.0391 -0.5295
5 6 3.3550 1.2916 0.6804
6 7 4.2106 2.2390 0.3602
7 14 3.7624 0.0891 2.0506
8 1 4.4905 -1.0757 1.4866
9 1 4.6147 0.7627 3.0632
10 1 2.5060 -0.3754 2.6914
11 6 2.1976 -1.2686 0.0006
12 6 2.4526 -1.7109 -1.4418
13 1 3.0416 -0.9514 -1.9559
14 8 1.2039 -1.8821 -2.1154
15 6 3.2172 -3.0362 -1.4412
16 7 3.5657 -3.3995 -2.8170
17 6 2.6479 -4.2179 -3.6133
18 6 4.7331 -2.9854 -3.3483
19 8 5.4565 -2.2432 -2.7184
20 6 5.1395 -3.4448 -4.7247
21 1 4.3364 -3.2602 -5.4382
22 6 5.5062 -4.9453 -4.7044
23 6 6.6949 -5.0547 -5.6855
24 6 6.9053 -3.6073 -6.1830
25 8 6.3486 -2.7749 -5.1423
26 1 -0.3633 0.0912 1.0236
27 1 -0.3633 0.8409 -0.5908
28 1 -0.3633 -0.9321 -0.4328
29 1 5.0527 2.3130 0.8359
30 1 1.6085 -2.0281 0.5147
31 1 3.1499 -1.1381 0.5144
32 1 0.6268 -2.5447 -1.7116
33 1 2.5920 -3.8162 -1.0067
34 1 4.1279 -2.9300 -0.8517
35 1 1.9127 -3.5740 -4.0961
36 1 3.2107 -4.7601 -4.3732
37 1 2.1374 -4.9284 -2.9632
38 1 5.8083 -5.2512 -3.7028
39 1 4.6674 -5.5483 -5.0521
40 1 7.5847 -5.4144 -5.1688
41 1 6.4446 -5.7135 -6.5169
42 1 7.9681 -3.3996 -6.3072
43 1 6.3760 -3.4483 -7.1223
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001486325565.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:29
Heat of formation + Delta-G solvation = -86.420851 kcal
Electronic energy + Delta-G solvation = -24229.030052 eV
Core-core repulsion = 20697.159302 eV
Total energy + Delta-G solvation = -3531.870751 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.47495 -38.71779 -37.35228 -35.39074 -34.55882 -32.37581 -31.47638 -30.81147
-29.34256 -27.06742 -26.18504 -25.49886 -23.54198 -21.86163 -21.64943 -20.85137
-19.39865 -17.54019 -17.03820 -16.61448 -16.12651 -15.77483 -15.72282 -15.29117
-14.98034 -14.71068 -14.15271 -14.06002 -13.64743 -13.57415 -13.23166 -12.89187
-12.69418 -12.48278 -12.39547 -12.05248 -11.85634 -11.80538 -11.58277 -11.42919
-11.30260 -11.03312 -10.80948 -10.55964 -10.40687 -10.12977 -10.07254 -9.72698
-9.44363 -9.43147 -8.51124 -8.32663 -6.74231 -5.89400 -3.28379 2.66011
2.86496 3.33580 3.49336 3.54012 3.82931 4.20219 4.38283 4.54228
4.58034 4.74902 4.84022 4.87073 4.90959 5.05423 5.10677 5.23702
5.31546 5.34475 5.39724 5.45810 5.51305 5.60692 5.61826 5.70655
5.71855 5.90462 5.95063 5.96814 6.34458 6.43480 6.44648 6.63149
6.75716 6.79646 6.89493 7.42746 8.09619 8.18024 8.31732 8.45571
9.05463 9.79599 10.17925 11.26799
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.020717 B = 0.004813 C = 0.004317
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1351.215540 B = 5815.752873 C = 6484.870600
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.134 3.866
2 N -0.603 5.603
3 C -0.269 4.269
4 H 0.080 0.920
5 C 0.033 3.967
6 N -0.899 5.899
7 Si 0.880 3.120
8 H -0.282 1.282
9 H -0.301 1.301
10 H -0.273 1.273
11 C 0.107 3.893
12 C 0.075 3.925
13 H 0.109 0.891
14 O -0.549 6.549
15 C 0.085 3.915
16 N -0.606 5.606
17 C 0.075 3.925
18 C 0.512 3.488
19 O -0.506 6.506
20 C 0.060 3.940
21 H 0.093 0.907
22 C -0.144 4.144
23 C -0.153 4.153
24 C 0.040 3.960
25 O -0.342 6.342
26 H 0.004 0.996
27 H 0.037 0.963
28 H 0.033 0.967
29 H 0.263 0.737
30 H 0.041 0.959
31 H 0.064 0.936
32 H 0.354 0.646
33 H 0.076 0.924
34 H 0.089 0.911
35 H 0.065 0.935
36 H 0.068 0.932
37 H 0.068 0.932
38 H 0.080 0.920
39 H 0.087 0.913
40 H 0.078 0.922
41 H 0.080 0.920
42 H 0.096 0.904
43 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.233 -20.821 -11.724 23.927
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.012 4.012
2 N -0.326 5.326
3 C -0.398 4.398
4 H 0.097 0.903
5 C -0.168 4.168
6 N -0.540 5.540
7 Si 0.712 3.288
8 H -0.211 1.211
9 H -0.230 1.230
10 H -0.198 1.198
11 C -0.020 4.020
12 C 0.012 3.988
13 H 0.127 0.873
14 O -0.352 6.352
15 C -0.038 4.038
16 N -0.342 5.342
17 C -0.068 4.068
18 C 0.298 3.702
19 O -0.379 6.379
20 C -0.001 4.001
21 H 0.110 0.890
22 C -0.182 4.182
23 C -0.191 4.191
24 C -0.037 4.037
25 O -0.260 6.260
26 H 0.022 0.978
27 H 0.056 0.944
28 H 0.052 0.948
29 H 0.073 0.927
30 H 0.059 0.941
31 H 0.082 0.918
32 H 0.198 0.802
33 H 0.094 0.906
34 H 0.107 0.893
35 H 0.084 0.916
36 H 0.087 0.913
37 H 0.087 0.913
38 H 0.099 0.901
39 H 0.105 0.895
40 H 0.097 0.903
41 H 0.098 0.902
42 H 0.114 0.886
43 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -0.357 -19.611 -11.638 22.807
hybrid contribution 0.037 -1.282 1.007 1.631
sum -0.321 -20.893 -10.631 23.445
Atomic orbital electron populations
1.21004 0.84090 0.98868 0.97195 1.43849 1.00891 1.01463 1.86379
1.18824 1.03827 0.89856 1.27288 0.90267 1.25382 0.96780 0.96609
0.97980 1.69846 1.08217 1.35041 1.40879 0.86963 0.77689 0.80547
0.83631 1.21106 1.22964 1.19773 1.21862 0.97487 0.88849 0.93812
1.23155 0.84028 0.94835 0.96764 0.87322 1.86661 1.29264 1.62980
1.56268 1.22371 1.01489 0.98073 0.81909 1.47616 1.18648 1.53237
1.14670 1.21945 0.93954 0.94924 0.95986 1.20179 0.81283 0.81173
0.87567 1.90810 1.52052 1.33496 1.61534 1.22853 0.90347 0.92181
0.94764 0.88970 1.22961 0.98988 0.94742 1.01473 1.22951 0.98882
0.97979 0.99296 1.23488 1.00080 0.88936 0.91154 1.89329 1.37133
1.45441 1.54070 0.97800 0.94439 0.94821 0.92659 0.94087 0.91842
0.80154 0.90584 0.89283 0.91607 0.91303 0.91318 0.90126 0.89476
0.90339 0.90155 0.88623 0.91955
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.13 2.77 10.38 59.84 0.62 3.39 16
2 N -0.60 -15.00 2.47 -181.12 -0.45 -15.45 16
3 C -0.27 -7.99 9.99 -15.05 -0.15 -8.14 16
4 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16
5 C 0.03 1.00 5.34 -17.43 -0.09 0.91 16
6 N -0.90 -29.05 13.97 55.49 0.78 -28.27 16
7 Si 0.88 23.25 25.02 -169.99 -4.25 18.99 16
8 H -0.28 -7.21 6.48 56.52 0.37 -6.85 16
9 H -0.30 -8.05 7.11 56.52 0.40 -7.64 16
10 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16
11 C 0.11 2.34 4.17 -4.04 -0.02 2.32 16
12 C 0.07 1.46 3.48 -26.73 -0.09 1.37 16
13 H 0.11 2.73 8.14 -51.93 -0.42 2.31 16
14 O -0.55 -9.37 11.63 -35.23 -0.41 -9.78 16
15 C 0.08 1.35 5.07 -4.04 -0.02 1.33 16
16 N -0.61 -8.67 2.84 -181.57 -0.51 -9.19 16
17 C 0.07 0.69 9.80 59.85 0.59 1.28 16
18 C 0.51 8.76 6.92 -10.99 -0.08 8.68 16
19 O -0.51 -11.59 16.19 -13.57 -0.22 -11.81 16
20 C 0.06 0.77 2.74 -27.11 -0.07 0.70 16
21 H 0.09 1.00 7.67 -51.93 -0.40 0.60 16
22 C -0.14 -1.27 5.79 -25.16 -0.15 -1.42 16
23 C -0.15 -1.16 7.09 -25.16 -0.18 -1.34 16
24 C 0.04 0.39 7.63 37.94 0.29 0.68 16
25 O -0.34 -5.25 10.92 -54.36 -0.59 -5.85 16
26 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16
27 H 0.04 0.78 8.08 -51.93 -0.42 0.37 16
28 H 0.03 0.58 7.00 -51.93 -0.36 0.22 16
29 H 0.26 8.10 8.31 -40.82 -0.34 7.76 16
30 H 0.04 0.75 8.07 -51.93 -0.42 0.34 16
31 H 0.06 1.56 2.64 -51.93 -0.14 1.43 16
32 H 0.35 4.44 8.79 45.56 0.40 4.84 16
33 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16
34 H 0.09 1.63 7.49 -51.93 -0.39 1.24 16
35 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16
36 H 0.07 0.47 4.41 -51.93 -0.23 0.24 16
37 H 0.07 0.49 7.95 -51.93 -0.41 0.08 16
38 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16
39 H 0.09 0.51 6.70 -51.93 -0.35 0.17 16
40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
41 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16
42 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16
43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
LS Contribution 340.00 15.07 5.12 5.12
Total: -1.00 -38.47 340.00 -5.97 -44.44
By element:
Atomic # 1 Polarization: 8.11 SS G_CDS: -6.08 Total: 2.03 kcal
Atomic # 6 Polarization: 9.11 SS G_CDS: 0.65 Total: 9.76 kcal
Atomic # 7 Polarization: -52.72 SS G_CDS: -0.19 Total: -52.90 kcal
Atomic # 8 Polarization: -26.22 SS G_CDS: -1.22 Total: -27.44 kcal
Atomic # 14 Polarization: 23.25 SS G_CDS: -4.25 Total: 18.99 kcal
Total LS contribution 5.12 Total: 5.12 kcal
Total: -38.47 -5.97 -44.44 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001486325565.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.980 kcal
(2) G-P(sol) polarization free energy of solvation -38.467 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.448 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.421 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds