Wall clock time and date at job start Tue Mar 31 2020 02:48:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.36947 * 119.99790 * 2 1
4 4 H 1.08002 * 119.99832 * 325.51945 * 3 2 1
5 5 C 1.38813 * 120.00069 * 145.52870 * 3 2 1
6 6 N 1.31615 * 120.00014 * 158.62856 * 5 3 2
7 7 Si 1.86803 * 119.99701 * 338.62713 * 5 3 2
8 8 H 1.48493 * 109.47182 * 90.93053 * 7 5 3
9 9 H 1.48507 * 109.46859 * 210.93313 * 7 5 3
10 10 H 1.48494 * 109.47066 * 330.92660 * 7 5 3
11 11 C 1.46496 * 120.00614 * 179.97438 * 2 1 3
12 12 C 1.53008 * 109.46962 * 89.99817 * 11 2 1
13 13 H 1.09003 * 109.46808 * 60.00493 * 12 11 2
14 14 O 1.42903 * 109.47031 * 300.00544 * 12 11 2
15 15 C 1.53001 * 109.46796 * 180.02562 * 12 11 2
16 16 N 1.46503 * 109.46819 * 185.00414 * 15 12 11
17 17 C 1.46500 * 119.99625 * 269.72224 * 16 15 12
18 18 C 1.34779 * 120.00364 * 89.99427 * 16 15 12
19 19 O 1.21283 * 119.99747 * 355.37088 * 18 16 15
20 20 C 1.50690 * 120.00058 * 175.36335 * 18 16 15
21 21 H 1.09002 * 110.33412 * 51.82629 * 20 18 16
22 22 C 1.54484 * 110.37350 * 289.57806 * 20 18 16
23 23 C 1.54513 * 104.06326 * 217.18846 * 22 20 18
24 24 C 1.54482 * 104.06232 * 359.97438 * 23 22 20
25 25 O 1.44422 * 104.80166 * 23.97844 * 24 23 22
26 26 H 1.09001 * 109.46994 * 275.08939 * 1 2 3
27 27 H 1.09002 * 109.47002 * 35.09180 * 1 2 3
28 28 H 1.08999 * 109.46833 * 155.09258 * 1 2 3
29 29 H 0.96998 * 119.99791 * 179.97438 * 6 5 3
30 30 H 1.09003 * 109.46957 * 330.00401 * 11 2 1
31 31 H 1.08995 * 109.47907 * 210.00392 * 11 2 1
32 32 H 0.96703 * 114.00095 * 299.99760 * 14 12 11
33 33 H 1.08996 * 109.47527 * 65.00379 * 15 12 11
34 34 H 1.09005 * 109.47298 * 304.99575 * 15 12 11
35 35 H 1.09001 * 109.47299 * 85.95412 * 17 16 15
36 36 H 1.09005 * 109.47360 * 205.95416 * 17 16 15
37 37 H 1.08997 * 109.47566 * 325.95410 * 17 16 15
38 38 H 1.08993 * 110.51271 * 335.83647 * 22 20 18
39 39 H 1.09005 * 110.51303 * 98.54727 * 22 20 18
40 40 H 1.08996 * 110.51110 * 118.64252 * 23 22 20
41 41 H 1.08998 * 110.51145 * 241.21984 * 23 22 20
42 42 H 1.09000 * 110.36907 * 142.80837 * 24 23 22
43 43 H 1.08995 * 110.37314 * 265.03533 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1860 0.0000
4 1 1.7519 2.0391 -0.5295
5 6 3.3550 1.2916 0.6804
6 7 4.2106 2.2390 0.3602
7 14 3.7624 0.0891 2.0506
8 1 4.4905 -1.0757 1.4866
9 1 4.6147 0.7627 3.0632
10 1 2.5060 -0.3754 2.6914
11 6 2.1976 -1.2686 0.0006
12 6 2.4526 -1.7109 -1.4418
13 1 3.0416 -0.9514 -1.9559
14 8 1.2039 -1.8821 -2.1154
15 6 3.2172 -3.0362 -1.4412
16 7 3.5657 -3.3995 -2.8170
17 6 2.6479 -4.2179 -3.6133
18 6 4.7331 -2.9854 -3.3483
19 8 5.4565 -2.2432 -2.7184
20 6 5.1395 -3.4448 -4.7247
21 1 4.3364 -3.2602 -5.4382
22 6 5.5062 -4.9453 -4.7044
23 6 6.6949 -5.0547 -5.6855
24 6 6.9053 -3.6073 -6.1830
25 8 6.3486 -2.7749 -5.1423
26 1 -0.3633 0.0912 1.0236
27 1 -0.3633 0.8409 -0.5908
28 1 -0.3633 -0.9321 -0.4328
29 1 5.0527 2.3130 0.8359
30 1 1.6085 -2.0281 0.5147
31 1 3.1499 -1.1381 0.5144
32 1 0.6268 -2.5447 -1.7116
33 1 2.5920 -3.8162 -1.0067
34 1 4.1279 -2.9300 -0.8517
35 1 1.9127 -3.5740 -4.0961
36 1 3.2107 -4.7601 -4.3732
37 1 2.1374 -4.9284 -2.9632
38 1 5.8083 -5.2512 -3.7028
39 1 4.6674 -5.5483 -5.0521
40 1 7.5847 -5.4144 -5.1688
41 1 6.4446 -5.7135 -6.5169
42 1 7.9681 -3.3996 -6.3072
43 1 6.3760 -3.4483 -7.1223
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001486325565.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:29
Heat of formation + Delta-G solvation = -118.641615 kcal
Electronic energy + Delta-G solvation = -24230.427250 eV
Core-core repulsion = 20697.159302 eV
Total energy + Delta-G solvation = -3533.267948 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.57472 -39.84765 -38.86652 -36.95457 -36.06869 -33.71179 -33.22119 -32.02675
-30.45990 -28.31014 -27.82079 -26.97882 -24.63794 -23.31549 -22.71085 -22.41911
-20.56461 -19.04129 -18.52111 -17.76244 -17.58496 -17.25043 -17.03068 -16.57144
-16.32705 -15.94077 -15.52518 -15.42479 -15.12190 -14.73631 -14.63190 -14.41472
-14.15192 -13.91750 -13.57945 -13.39043 -13.22265 -12.82198 -12.72320 -12.67682
-12.54318 -12.39826 -12.23747 -12.11254 -11.95768 -11.66501 -11.53074 -11.35485
-11.07273 -10.69227 -10.62395 -9.66840 -8.76006 -8.24446 -5.59701 1.22884
1.32981 1.44067 1.45899 1.78623 2.36723 2.93231 3.02046 3.33769
3.38711 3.56370 3.58682 3.85519 3.93416 4.01072 4.08208 4.16048
4.22584 4.32649 4.35136 4.45479 4.59807 4.62690 4.69315 4.75392
4.77715 4.81065 4.87378 4.98618 5.03055 5.07046 5.11644 5.13000
5.21480 5.47017 5.75077 5.87274 6.08760 6.31535 6.92356 7.02710
7.10154 7.60705 7.97884 8.96205
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.020717 B = 0.004813 C = 0.004317
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1351.215540 B = 5815.752873 C = 6484.870600
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.132 3.868
2 N -0.618 5.618
3 C -0.263 4.263
4 H 0.033 0.967
5 C -0.032 4.032
6 N -0.955 5.955
7 Si 0.955 3.045
8 H -0.274 1.274
9 H -0.309 1.309
10 H -0.247 1.247
11 C 0.100 3.900
12 C 0.096 3.904
13 H 0.036 0.964
14 O -0.551 6.551
15 C 0.090 3.910
16 N -0.600 5.600
17 C 0.067 3.933
18 C 0.497 3.503
19 O -0.585 6.585
20 C 0.059 3.941
21 H 0.116 0.884
22 C -0.135 4.135
23 C -0.145 4.145
24 C 0.029 3.971
25 O -0.397 6.397
26 H 0.015 0.985
27 H 0.022 0.978
28 H 0.077 0.923
29 H 0.261 0.739
30 H 0.093 0.907
31 H 0.034 0.966
32 H 0.382 0.618
33 H 0.133 0.867
34 H 0.056 0.944
35 H 0.062 0.938
36 H 0.096 0.904
37 H 0.103 0.897
38 H 0.066 0.934
39 H 0.129 0.871
40 H 0.075 0.925
41 H 0.116 0.884
42 H 0.097 0.903
43 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.526 -25.901 -12.263 28.874
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.012 4.012
2 N -0.342 5.342
3 C -0.393 4.393
4 H 0.051 0.949
5 C -0.228 4.228
6 N -0.600 5.600
7 Si 0.783 3.217
8 H -0.202 1.202
9 H -0.238 1.238
10 H -0.170 1.170
11 C -0.026 4.026
12 C 0.033 3.967
13 H 0.054 0.946
14 O -0.358 6.358
15 C -0.034 4.034
16 N -0.333 5.333
17 C -0.074 4.074
18 C 0.285 3.715
19 O -0.464 6.464
20 C -0.002 4.002
21 H 0.133 0.867
22 C -0.173 4.173
23 C -0.183 4.183
24 C -0.047 4.047
25 O -0.316 6.316
26 H 0.033 0.967
27 H 0.041 0.959
28 H 0.096 0.904
29 H 0.070 0.930
30 H 0.111 0.889
31 H 0.052 0.948
32 H 0.230 0.770
33 H 0.151 0.849
34 H 0.075 0.925
35 H 0.081 0.919
36 H 0.115 0.885
37 H 0.121 0.879
38 H 0.085 0.915
39 H 0.147 0.853
40 H 0.094 0.906
41 H 0.134 0.866
42 H 0.115 0.885
43 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -2.750 -24.786 -12.206 27.765
hybrid contribution 0.618 0.328 1.015 1.233
sum -2.132 -24.458 -11.191 26.981
Atomic orbital electron populations
1.21141 0.81453 1.00635 0.97978 1.44000 1.02627 1.00858 1.86695
1.18720 1.03922 0.90873 1.25786 0.94901 1.26134 0.96795 0.99247
1.00604 1.70013 1.08985 1.38343 1.42614 0.85758 0.78272 0.78124
0.79498 1.20191 1.23759 1.17044 1.22021 0.96645 0.88595 0.95336
1.22480 0.84876 0.95077 0.94296 0.94565 1.86616 1.28652 1.64385
1.56136 1.22227 1.00395 0.97636 0.83114 1.47748 1.18501 1.52582
1.14453 1.22322 0.93393 0.94872 0.96814 1.21203 0.81362 0.80009
0.88924 1.90765 1.54683 1.37162 1.63839 1.23053 0.90430 0.94532
0.92195 0.86685 1.23009 1.00964 0.91881 1.01402 1.22964 0.98362
0.96906 1.00042 1.23796 1.00348 0.89773 0.90762 1.89287 1.38460
1.47913 1.55914 0.96658 0.95886 0.90439 0.93017 0.88851 0.94800
0.76966 0.84887 0.92496 0.91914 0.88538 0.87870 0.91495 0.85284
0.90597 0.86566 0.88478 0.89921
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.13 5.16 10.38 127.77 1.33 6.48 16
2 N -0.62 -30.38 2.47 -726.93 -1.79 -32.17 16
3 C -0.26 -16.26 9.99 84.03 0.84 -15.42 16
4 H 0.03 2.28 8.06 -2.91 -0.02 2.25 16
5 C -0.03 -2.04 5.34 84.86 0.45 -1.59 16
6 N -0.96 -65.58 13.97 21.65 0.30 -65.28 16
7 Si 0.95 49.52 25.02 68.60 1.72 51.24 16
8 H -0.27 -13.71 6.48 99.48 0.64 -13.07 16
9 H -0.31 -16.19 7.11 99.48 0.71 -15.48 16
10 H -0.25 -11.64 7.11 99.48 0.71 -10.93 16
11 C 0.10 4.17 4.17 86.38 0.36 4.53 16
12 C 0.10 3.68 3.48 30.60 0.11 3.79 16
13 H 0.04 1.93 8.14 -2.39 -0.02 1.92 16
14 O -0.55 -17.15 11.63 -148.98 -1.73 -18.88 16
15 C 0.09 2.69 5.07 86.38 0.44 3.13 16
16 N -0.60 -16.09 2.84 -846.75 -2.40 -18.49 16
17 C 0.07 0.92 9.80 127.77 1.25 2.17 16
18 C 0.50 17.31 6.92 87.65 0.61 17.91 16
19 O -0.59 -28.90 16.19 15.25 0.25 -28.65 16
20 C 0.06 1.45 2.74 30.35 0.08 1.54 16
21 H 0.12 2.23 7.67 -2.39 -0.02 2.21 16
22 C -0.13 -1.96 5.79 31.61 0.18 -1.77 16
23 C -0.15 -1.76 7.09 31.61 0.22 -1.54 16
24 C 0.03 0.53 7.63 72.49 0.55 1.08 16
25 O -0.40 -12.51 10.92 -130.69 -1.43 -13.94 16
26 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16
27 H 0.02 0.94 8.08 -2.39 -0.02 0.92 16
28 H 0.08 2.32 7.00 -2.39 -0.02 2.30 16
29 H 0.26 17.05 8.31 -92.71 -0.77 16.28 16
30 H 0.09 2.93 8.07 -2.39 -0.02 2.91 16
31 H 0.03 1.64 2.64 -2.39 -0.01 1.64 16
32 H 0.38 7.32 8.79 -74.06 -0.65 6.67 16
33 H 0.13 2.44 7.93 -2.39 -0.02 2.42 16
34 H 0.06 2.10 7.49 -2.38 -0.02 2.08 16
35 H 0.06 0.96 8.06 -2.39 -0.02 0.94 16
36 H 0.10 0.80 4.41 -2.38 -0.01 0.79 16
37 H 0.10 0.78 7.95 -2.39 -0.02 0.76 16
38 H 0.07 1.18 7.86 -2.39 -0.02 1.16 16
39 H 0.13 0.76 6.70 -2.38 -0.02 0.74 16
40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
41 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16
42 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16
43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16
Total: -1.00 -96.15 340.00 1.63 -94.52
By element:
Atomic # 1 Polarization: 11.04 SS G_CDS: 0.30 Total: 11.33 kcal
Atomic # 6 Polarization: 13.89 SS G_CDS: 6.43 Total: 20.32 kcal
Atomic # 7 Polarization: -112.05 SS G_CDS: -3.89 Total: -115.94 kcal
Atomic # 8 Polarization: -58.55 SS G_CDS: -2.91 Total: -61.46 kcal
Atomic # 14 Polarization: 49.52 SS G_CDS: 1.72 Total: 51.24 kcal
Total: -96.15 1.63 -94.52 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001486325565.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.121 kcal
(2) G-P(sol) polarization free energy of solvation -96.153 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.274 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.520 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.642 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds