Wall clock time and date at job start Tue Mar 31 2020 02:48:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.36933 * 120.00010 * 2 1
4 4 H 1.07997 * 120.00241 * 322.09529 * 3 2 1
5 5 C 1.38817 * 120.00138 * 142.09278 * 3 2 1
6 6 N 1.31619 * 120.00131 * 157.11486 * 5 3 2
7 7 Si 1.86798 * 119.99906 * 337.11665 * 5 3 2
8 8 H 1.48496 * 109.47572 * 95.72957 * 7 5 3
9 9 H 1.48498 * 109.47044 * 215.73138 * 7 5 3
10 10 H 1.48501 * 109.47256 * 335.72855 * 7 5 3
11 11 C 1.46501 * 119.99999 * 179.97438 * 2 1 3
12 12 C 1.52999 * 109.46847 * 89.99913 * 11 2 1
13 13 H 1.09000 * 109.47082 * 60.00612 * 12 11 2
14 14 O 1.42895 * 109.47693 * 300.00038 * 12 11 2
15 15 C 1.53002 * 109.46805 * 179.97438 * 12 11 2
16 16 N 1.46505 * 109.47063 * 185.00272 * 15 12 11
17 17 C 1.46500 * 119.99707 * 269.99934 * 16 15 12
18 18 C 1.34777 * 119.99946 * 90.00168 * 16 15 12
19 19 O 1.21278 * 120.00158 * 359.97438 * 18 16 15
20 20 C 1.50700 * 119.99615 * 180.02562 * 18 16 15
21 21 H 1.08991 * 110.27719 * 304.29666 * 20 18 16
22 22 C 1.54950 * 110.31057 * 66.39167 * 20 18 16
23 23 C 1.55414 * 100.89399 * 155.28368 * 22 20 18
24 24 C 1.54384 * 102.30882 * 325.99327 * 23 22 20
25 25 O 1.43231 * 107.59212 * 21.28299 * 24 23 22
26 26 H 1.08997 * 109.46694 * 269.55884 * 1 2 3
27 27 H 1.09000 * 109.46838 * 29.55982 * 1 2 3
28 28 H 1.08998 * 109.47061 * 149.56121 * 1 2 3
29 29 H 0.97002 * 119.99862 * 180.02562 * 6 5 3
30 30 H 1.09001 * 109.47017 * 329.99842 * 11 2 1
31 31 H 1.09001 * 109.46816 * 209.99849 * 11 2 1
32 32 H 0.96698 * 113.99866 * 300.00444 * 14 12 11
33 33 H 1.08996 * 109.47601 * 305.00056 * 15 12 11
34 34 H 1.08994 * 109.47086 * 65.00108 * 15 12 11
35 35 H 1.09006 * 109.46797 * 90.00343 * 17 16 15
36 36 H 1.09000 * 109.46967 * 209.99838 * 17 16 15
37 37 H 1.08997 * 109.47510 * 330.00339 * 17 16 15
38 38 H 1.09001 * 111.12397 * 273.27561 * 22 20 18
39 39 H 1.09004 * 111.12153 * 37.43570 * 22 20 18
40 40 H 1.08999 * 110.88308 * 207.75258 * 23 22 20
41 41 H 1.09004 * 110.93079 * 84.25132 * 23 22 20
42 42 H 1.09004 * 109.82649 * 261.77006 * 24 23 22
43 43 H 1.09000 * 109.83172 * 140.79699 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 1.7807 2.0225 -0.5746
5 6 3.3182 1.3127 0.7386
6 7 4.2040 2.2314 0.4164
7 14 3.6335 0.1795 2.1897
8 1 4.4727 -0.9645 1.7513
9 1 4.3393 0.9298 3.2594
10 1 2.3393 -0.3276 2.7122
11 6 2.1976 -1.2687 0.0006
12 6 2.4525 -1.7110 -1.4417
13 1 3.0417 -0.9516 -1.9559
14 8 1.2040 -1.8822 -2.1154
15 6 3.2181 -3.0357 -1.4411
16 7 3.5665 -3.3990 -2.8170
17 6 2.6464 -4.2131 -3.6150
18 6 4.7336 -2.9843 -3.3485
19 8 5.4951 -2.3100 -2.6880
20 6 5.0916 -3.3575 -4.7640
21 1 5.0616 -4.4399 -4.8883
22 6 4.1229 -2.6743 -5.7618
23 6 5.0016 -2.6335 -7.0430
24 6 6.4175 -2.4243 -6.4645
25 8 6.3946 -2.8533 -5.0981
26 1 -0.3632 -0.0079 1.0276
27 1 -0.3633 0.8939 -0.5070
28 1 -0.3633 -0.8860 -0.5206
29 1 5.0207 2.3198 0.9323
30 1 1.6085 -2.0281 0.5148
31 1 3.1500 -1.1381 0.5143
32 1 0.6268 -2.5447 -1.7116
33 1 4.1288 -2.9289 -0.8519
34 1 2.5936 -3.8161 -1.0064
35 1 1.9592 -3.5613 -4.1546
36 1 3.2148 -4.8111 -4.3273
37 1 2.0805 -4.8725 -2.9569
38 1 3.2282 -3.2776 -5.9162
39 1 3.8639 -1.6683 -5.4316
40 1 4.7167 -1.7984 -7.6831
41 1 4.9403 -3.5758 -7.5875
42 1 6.6860 -1.3691 -6.5163
43 1 7.1381 -3.0184 -7.0265
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001486325568.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:32
Heat of formation + Delta-G solvation = -92.404892 kcal
Electronic energy + Delta-G solvation = -24353.120105 eV
Core-core repulsion = 20820.989867 eV
Total energy + Delta-G solvation = -3532.130238 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.44033 -38.68783 -37.34482 -35.38258 -34.55670 -32.32794 -31.50957 -30.81424
-29.35717 -27.05825 -26.17129 -25.48575 -23.28683 -21.94369 -21.68183 -20.82246
-19.27523 -17.74538 -17.03367 -16.67351 -15.90115 -15.74157 -15.64420 -15.39561
-14.87441 -14.67174 -14.35211 -13.69785 -13.59127 -13.39598 -13.29073 -12.95362
-12.70186 -12.47536 -12.41911 -12.06402 -11.85156 -11.81236 -11.58966 -11.35762
-11.25600 -11.13692 -10.81223 -10.56811 -10.40402 -10.14667 -9.99804 -9.74468
-9.54832 -9.28048 -8.51836 -8.34039 -6.70203 -5.93517 -3.33761 2.72765
2.83232 3.34925 3.49472 3.54219 3.79502 4.17621 4.44727 4.57256
4.60573 4.80931 4.84233 4.89018 4.99169 5.06359 5.07955 5.31206
5.33150 5.42993 5.43394 5.46597 5.57501 5.60613 5.66800 5.70206
5.89100 5.91687 5.95564 5.97611 6.36469 6.45989 6.52346 6.74577
6.78105 6.80540 6.87448 7.44305 8.08998 8.16467 8.33803 8.45299
9.04305 9.77090 10.17985 11.22343
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.019024 B = 0.005060 C = 0.004612
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1471.454292 B = 5532.687486 C = 6069.030393
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.132 3.868
2 N -0.601 5.601
3 C -0.272 4.272
4 H 0.077 0.923
5 C 0.037 3.963
6 N -0.895 5.895
7 Si 0.874 3.126
8 H -0.284 1.284
9 H -0.299 1.299
10 H -0.270 1.270
11 C 0.113 3.887
12 C 0.076 3.924
13 H 0.107 0.893
14 O -0.549 6.549
15 C 0.083 3.917
16 N -0.606 5.606
17 C 0.080 3.920
18 C 0.507 3.493
19 O -0.509 6.509
20 C 0.068 3.932
21 H 0.093 0.907
22 C -0.146 4.146
23 C -0.154 4.154
24 C 0.048 3.952
25 O -0.354 6.354
26 H 0.002 0.998
27 H 0.040 0.960
28 H 0.032 0.968
29 H 0.264 0.736
30 H 0.040 0.960
31 H 0.062 0.938
32 H 0.354 0.646
33 H 0.090 0.910
34 H 0.076 0.924
35 H 0.065 0.935
36 H 0.064 0.936
37 H 0.069 0.931
38 H 0.093 0.907
39 H 0.088 0.912
40 H 0.086 0.914
41 H 0.078 0.922
42 H 0.073 0.927
43 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.374 -17.243 -13.285 22.027
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.014 4.014
2 N -0.325 5.325
3 C -0.401 4.401
4 H 0.094 0.906
5 C -0.164 4.164
6 N -0.536 5.536
7 Si 0.704 3.296
8 H -0.212 1.212
9 H -0.227 1.227
10 H -0.195 1.195
11 C -0.015 4.015
12 C 0.013 3.987
13 H 0.125 0.875
14 O -0.352 6.352
15 C -0.040 4.040
16 N -0.342 5.342
17 C -0.063 4.063
18 C 0.293 3.707
19 O -0.382 6.382
20 C 0.007 3.993
21 H 0.110 0.890
22 C -0.183 4.183
23 C -0.191 4.191
24 C -0.029 4.029
25 O -0.273 6.273
26 H 0.020 0.980
27 H 0.059 0.941
28 H 0.051 0.949
29 H 0.074 0.926
30 H 0.059 0.941
31 H 0.079 0.921
32 H 0.199 0.801
33 H 0.108 0.892
34 H 0.094 0.906
35 H 0.083 0.917
36 H 0.083 0.917
37 H 0.088 0.912
38 H 0.111 0.889
39 H 0.107 0.893
40 H 0.105 0.895
41 H 0.097 0.903
42 H 0.091 0.909
43 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -2.379 -16.269 -13.131 21.042
hybrid contribution -0.062 -1.048 1.034 1.474
sum -2.441 -17.318 -12.097 21.265
Atomic orbital electron populations
1.21041 0.84264 0.99140 0.96912 1.43821 1.00809 1.01457 1.86382
1.18768 1.06298 0.90723 1.24282 0.90552 1.25476 0.96736 0.96452
0.97738 1.69877 1.08334 1.36059 1.39302 0.86954 0.77800 0.80333
0.84492 1.21189 1.22730 1.19539 1.21753 0.97224 0.88859 0.93616
1.23145 0.84008 0.94768 0.96772 0.87492 1.86644 1.29269 1.63016
1.56295 1.22383 1.01532 0.98028 0.82092 1.47648 1.18798 1.53206
1.14512 1.21883 0.93686 0.94741 0.95992 1.20421 0.81364 0.80484
0.88450 1.90794 1.49458 1.36405 1.61528 1.22793 0.84838 0.98801
0.92872 0.88989 1.23325 0.98306 1.02978 0.93739 1.23144 0.94737
1.03345 0.97908 1.23214 0.96885 1.00492 0.82301 1.88546 1.28501
1.82581 1.27641 0.98007 0.94118 0.94938 0.92650 0.94147 0.92057
0.80087 0.89162 0.90606 0.91668 0.91740 0.91200 0.88863 0.89305
0.89517 0.90305 0.90866 0.91103
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.13 2.70 10.44 59.85 0.62 3.33 16
2 N -0.60 -14.77 2.39 -181.12 -0.43 -15.20 16
3 C -0.27 -7.97 9.90 -15.06 -0.15 -8.12 16
4 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16
5 C 0.04 1.11 5.29 -17.43 -0.09 1.02 16
6 N -0.90 -28.60 13.97 55.49 0.78 -27.83 16
7 Si 0.87 22.98 25.09 -169.99 -4.26 18.72 16
8 H -0.28 -7.29 6.68 56.52 0.38 -6.91 16
9 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16
10 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16
11 C 0.11 2.43 4.21 -4.04 -0.02 2.41 16
12 C 0.08 1.44 3.48 -26.73 -0.09 1.35 16
13 H 0.11 2.61 8.14 -51.93 -0.42 2.19 16
14 O -0.55 -9.06 11.61 -35.23 -0.41 -9.47 16
15 C 0.08 1.30 5.11 -4.04 -0.02 1.28 16
16 N -0.61 -8.56 2.84 -181.57 -0.52 -9.07 16
17 C 0.08 0.72 8.67 59.85 0.52 1.24 16
18 C 0.51 8.60 7.09 -10.99 -0.08 8.52 16
19 O -0.51 -11.55 16.13 -13.78 -0.22 -11.77 16
20 C 0.07 0.88 2.94 -26.85 -0.08 0.80 16
21 H 0.09 0.91 7.20 -51.93 -0.37 0.54 16
22 C -0.15 -1.49 5.82 -24.42 -0.14 -1.64 16
23 C -0.15 -1.27 7.02 -24.72 -0.17 -1.44 16
24 C 0.05 0.51 7.80 37.88 0.30 0.81 16
25 O -0.35 -5.45 10.61 -54.57 -0.58 -6.02 16
26 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16
27 H 0.04 0.84 8.04 -51.93 -0.42 0.43 16
28 H 0.03 0.56 6.87 -51.93 -0.36 0.20 16
29 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16
30 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16
31 H 0.06 1.49 3.36 -51.93 -0.17 1.32 16
32 H 0.35 4.31 8.79 45.56 0.40 4.71 16
33 H 0.09 1.65 7.42 -51.93 -0.39 1.27 16
34 H 0.08 0.91 7.89 -51.93 -0.41 0.50 16
35 H 0.06 0.59 7.72 -51.93 -0.40 0.19 16
36 H 0.06 0.43 6.02 -51.93 -0.31 0.12 16
37 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16
38 H 0.09 0.70 6.66 -51.93 -0.35 0.36 16
39 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16
40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16
42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
LS Contribution 340.51 15.07 5.13 5.13
Total: -1.00 -37.76 340.51 -6.06 -43.83
By element:
Atomic # 1 Polarization: 8.26 SS G_CDS: -6.14 Total: 2.12 kcal
Atomic # 6 Polarization: 8.97 SS G_CDS: 0.59 Total: 9.57 kcal
Atomic # 7 Polarization: -51.93 SS G_CDS: -0.17 Total: -52.10 kcal
Atomic # 8 Polarization: -26.05 SS G_CDS: -1.21 Total: -27.26 kcal
Atomic # 14 Polarization: 22.98 SS G_CDS: -4.26 Total: 18.72 kcal
Total LS contribution 5.13 Total: 5.13 kcal
Total: -37.76 -6.06 -43.83 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001486325568.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.579 kcal
(2) G-P(sol) polarization free energy of solvation -37.761 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.340 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.826 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.405 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds