Wall clock time and date at job start Tue Mar 31 2020 02:48:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.36933 * 120.00010 * 2 1
4 4 H 1.07997 * 120.00241 * 322.09529 * 3 2 1
5 5 C 1.38817 * 120.00138 * 142.09278 * 3 2 1
6 6 N 1.31619 * 120.00131 * 157.11486 * 5 3 2
7 7 Si 1.86798 * 119.99906 * 337.11665 * 5 3 2
8 8 H 1.48496 * 109.47572 * 95.72957 * 7 5 3
9 9 H 1.48498 * 109.47044 * 215.73138 * 7 5 3
10 10 H 1.48501 * 109.47256 * 335.72855 * 7 5 3
11 11 C 1.46501 * 119.99999 * 179.97438 * 2 1 3
12 12 C 1.52999 * 109.46847 * 89.99913 * 11 2 1
13 13 H 1.09000 * 109.47082 * 60.00612 * 12 11 2
14 14 O 1.42895 * 109.47693 * 300.00038 * 12 11 2
15 15 C 1.53002 * 109.46805 * 179.97438 * 12 11 2
16 16 N 1.46505 * 109.47063 * 185.00272 * 15 12 11
17 17 C 1.46500 * 119.99707 * 269.99934 * 16 15 12
18 18 C 1.34777 * 119.99946 * 90.00168 * 16 15 12
19 19 O 1.21278 * 120.00158 * 359.97438 * 18 16 15
20 20 C 1.50700 * 119.99615 * 180.02562 * 18 16 15
21 21 H 1.08991 * 110.27719 * 304.29666 * 20 18 16
22 22 C 1.54950 * 110.31057 * 66.39167 * 20 18 16
23 23 C 1.55414 * 100.89399 * 155.28368 * 22 20 18
24 24 C 1.54384 * 102.30882 * 325.99327 * 23 22 20
25 25 O 1.43231 * 107.59212 * 21.28299 * 24 23 22
26 26 H 1.08997 * 109.46694 * 269.55884 * 1 2 3
27 27 H 1.09000 * 109.46838 * 29.55982 * 1 2 3
28 28 H 1.08998 * 109.47061 * 149.56121 * 1 2 3
29 29 H 0.97002 * 119.99862 * 180.02562 * 6 5 3
30 30 H 1.09001 * 109.47017 * 329.99842 * 11 2 1
31 31 H 1.09001 * 109.46816 * 209.99849 * 11 2 1
32 32 H 0.96698 * 113.99866 * 300.00444 * 14 12 11
33 33 H 1.08996 * 109.47601 * 305.00056 * 15 12 11
34 34 H 1.08994 * 109.47086 * 65.00108 * 15 12 11
35 35 H 1.09006 * 109.46797 * 90.00343 * 17 16 15
36 36 H 1.09000 * 109.46967 * 209.99838 * 17 16 15
37 37 H 1.08997 * 109.47510 * 330.00339 * 17 16 15
38 38 H 1.09001 * 111.12397 * 273.27561 * 22 20 18
39 39 H 1.09004 * 111.12153 * 37.43570 * 22 20 18
40 40 H 1.08999 * 110.88308 * 207.75258 * 23 22 20
41 41 H 1.09004 * 110.93079 * 84.25132 * 23 22 20
42 42 H 1.09004 * 109.82649 * 261.77006 * 24 23 22
43 43 H 1.09000 * 109.83172 * 140.79699 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 1.7807 2.0225 -0.5746
5 6 3.3182 1.3127 0.7386
6 7 4.2040 2.2314 0.4164
7 14 3.6335 0.1795 2.1897
8 1 4.4727 -0.9645 1.7513
9 1 4.3393 0.9298 3.2594
10 1 2.3393 -0.3276 2.7122
11 6 2.1976 -1.2687 0.0006
12 6 2.4525 -1.7110 -1.4417
13 1 3.0417 -0.9516 -1.9559
14 8 1.2040 -1.8822 -2.1154
15 6 3.2181 -3.0357 -1.4411
16 7 3.5665 -3.3990 -2.8170
17 6 2.6464 -4.2131 -3.6150
18 6 4.7336 -2.9843 -3.3485
19 8 5.4951 -2.3100 -2.6880
20 6 5.0916 -3.3575 -4.7640
21 1 5.0616 -4.4399 -4.8883
22 6 4.1229 -2.6743 -5.7618
23 6 5.0016 -2.6335 -7.0430
24 6 6.4175 -2.4243 -6.4645
25 8 6.3946 -2.8533 -5.0981
26 1 -0.3632 -0.0079 1.0276
27 1 -0.3633 0.8939 -0.5070
28 1 -0.3633 -0.8860 -0.5206
29 1 5.0207 2.3198 0.9323
30 1 1.6085 -2.0281 0.5148
31 1 3.1500 -1.1381 0.5143
32 1 0.6268 -2.5447 -1.7116
33 1 4.1288 -2.9289 -0.8519
34 1 2.5936 -3.8161 -1.0064
35 1 1.9592 -3.5613 -4.1546
36 1 3.2148 -4.8111 -4.3273
37 1 2.0805 -4.8725 -2.9569
38 1 3.2282 -3.2776 -5.9162
39 1 3.8639 -1.6683 -5.4316
40 1 4.7167 -1.7984 -7.6831
41 1 4.9403 -3.5758 -7.5875
42 1 6.6860 -1.3691 -6.5163
43 1 7.1381 -3.0184 -7.0265
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001486325568.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:32
Heat of formation + Delta-G solvation = -123.720239 kcal
Electronic energy + Delta-G solvation = -24354.478040 eV
Core-core repulsion = 20820.989867 eV
Total energy + Delta-G solvation = -3533.488173 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 286.173 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.55932 -39.83711 -38.84736 -36.93334 -36.04980 -33.72211 -33.24167 -32.02756
-30.51097 -28.27540 -27.81155 -26.98366 -24.46430 -23.24974 -22.71604 -22.57678
-20.44357 -19.08183 -18.66767 -17.79630 -17.46069 -17.33789 -16.73814 -16.64365
-16.25385 -16.16874 -15.47391 -15.38247 -15.20271 -14.62267 -14.40607 -14.31006
-14.20603 -13.97085 -13.54943 -13.32966 -13.15929 -12.98586 -12.76426 -12.67370
-12.62117 -12.39629 -12.19922 -12.09465 -11.98474 -11.89244 -11.62959 -11.33980
-11.06978 -10.68187 -10.43018 -9.65167 -8.69867 -8.26327 -5.62703 1.24765
1.33204 1.46165 1.48491 1.77758 2.36966 2.87832 2.96536 3.30769
3.39741 3.53876 3.61102 3.84112 3.96713 4.01223 4.07367 4.10544
4.26785 4.30075 4.36999 4.46190 4.64132 4.69719 4.71802 4.74723
4.78342 4.81996 4.84303 4.94436 5.02987 5.07856 5.14268 5.16564
5.22796 5.48937 5.87216 5.89167 6.10292 6.34660 6.93928 7.03425
7.12754 7.60323 8.00152 8.94063
Molecular weight = 286.17amu
Principal moments of inertia in cm(-1)
A = 0.019024 B = 0.005060 C = 0.004612
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1471.454292 B = 5532.687486 C = 6069.030393
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.130 3.870
2 N -0.616 5.616
3 C -0.263 4.263
4 H 0.031 0.969
5 C -0.027 4.027
6 N -0.951 5.951
7 Si 0.948 3.052
8 H -0.279 1.279
9 H -0.306 1.306
10 H -0.246 1.246
11 C 0.106 3.894
12 C 0.099 3.901
13 H 0.037 0.963
14 O -0.550 6.550
15 C 0.088 3.912
16 N -0.599 5.599
17 C 0.069 3.931
18 C 0.491 3.509
19 O -0.588 6.588
20 C 0.069 3.931
21 H 0.134 0.866
22 C -0.141 4.141
23 C -0.140 4.140
24 C 0.035 3.965
25 O -0.399 6.399
26 H 0.015 0.985
27 H 0.026 0.974
28 H 0.074 0.926
29 H 0.261 0.739
30 H 0.091 0.909
31 H 0.030 0.970
32 H 0.382 0.618
33 H 0.056 0.944
34 H 0.131 0.869
35 H 0.068 0.932
36 H 0.094 0.906
37 H 0.100 0.900
38 H 0.131 0.869
39 H 0.050 0.950
40 H 0.096 0.904
41 H 0.114 0.886
42 H 0.056 0.944
43 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.025 -21.850 -14.161 26.726
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.014 4.014
2 N -0.341 5.341
3 C -0.394 4.394
4 H 0.049 0.951
5 C -0.223 4.223
6 N -0.595 5.595
7 Si 0.775 3.225
8 H -0.207 1.207
9 H -0.234 1.234
10 H -0.169 1.169
11 C -0.020 4.020
12 C 0.036 3.964
13 H 0.055 0.945
14 O -0.356 6.356
15 C -0.036 4.036
16 N -0.332 5.332
17 C -0.071 4.071
18 C 0.279 3.721
19 O -0.467 6.467
20 C 0.008 3.992
21 H 0.151 0.849
22 C -0.179 4.179
23 C -0.177 4.177
24 C -0.041 4.041
25 O -0.318 6.318
26 H 0.033 0.967
27 H 0.045 0.955
28 H 0.092 0.908
29 H 0.070 0.930
30 H 0.109 0.891
31 H 0.048 0.952
32 H 0.230 0.770
33 H 0.074 0.926
34 H 0.149 0.851
35 H 0.086 0.914
36 H 0.112 0.888
37 H 0.119 0.881
38 H 0.149 0.851
39 H 0.069 0.931
40 H 0.115 0.885
41 H 0.133 0.867
42 H 0.074 0.926
43 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -5.134 -20.957 -14.037 25.740
hybrid contribution 0.638 0.397 1.172 1.392
sum -4.496 -20.559 -12.864 24.666
Atomic orbital electron populations
1.21169 0.81614 1.00538 0.98047 1.43972 1.02530 1.00839 1.86717
1.18647 1.06302 0.91724 1.22688 0.95148 1.26195 0.96674 0.98793
1.00618 1.70033 1.09217 1.39315 1.40901 0.85776 0.78569 0.78123
0.79984 1.20665 1.23396 1.16911 1.21907 0.96293 0.88595 0.95252
1.22446 0.84889 0.94884 0.94215 0.94471 1.86602 1.28568 1.64376
1.56081 1.22231 1.00353 0.97716 0.83295 1.47776 1.18666 1.52501
1.14284 1.22294 0.93372 0.94747 0.96732 1.21436 0.81431 0.79302
0.89902 1.90750 1.52173 1.40081 1.63699 1.23043 0.84696 1.00969
0.90453 0.84882 1.23341 0.99520 1.01233 0.93801 1.23162 0.91925
1.05648 0.97002 1.23468 0.99576 1.00043 0.80995 1.88506 1.30117
1.83077 1.30147 0.96725 0.95510 0.90761 0.92974 0.89110 0.95191
0.76970 0.92583 0.85102 0.91353 0.88795 0.88112 0.85116 0.93145
0.88518 0.86744 0.92558 0.88702
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.13 5.03 10.44 127.77 1.33 6.36 16
2 N -0.62 -29.91 2.39 -726.93 -1.74 -31.65 16
3 C -0.26 -16.07 9.90 84.04 0.83 -15.24 16
4 H 0.03 2.09 8.06 -2.91 -0.02 2.06 16
5 C -0.03 -1.66 5.29 84.86 0.45 -1.22 16
6 N -0.95 -64.51 13.97 21.65 0.30 -64.21 16
7 Si 0.95 48.98 25.09 68.60 1.72 50.70 16
8 H -0.28 -14.08 6.68 99.48 0.66 -13.41 16
9 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16
10 H -0.25 -11.57 7.11 99.48 0.71 -10.86 16
11 C 0.11 4.37 4.21 86.38 0.36 4.73 16
12 C 0.10 3.71 3.48 30.59 0.11 3.81 16
13 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16
14 O -0.55 -16.40 11.61 -148.98 -1.73 -18.13 16
15 C 0.09 2.61 5.11 86.38 0.44 3.05 16
16 N -0.60 -15.84 2.84 -846.75 -2.40 -18.24 16
17 C 0.07 0.91 8.67 127.77 1.11 2.01 16
18 C 0.49 16.95 7.09 87.66 0.62 17.57 16
19 O -0.59 -28.78 16.13 15.47 0.25 -28.53 16
20 C 0.07 1.69 2.94 30.52 0.09 1.78 16
21 H 0.13 2.13 7.20 -2.39 -0.02 2.11 16
22 C -0.14 -2.62 5.82 32.09 0.19 -2.43 16
23 C -0.14 -1.93 7.02 31.89 0.22 -1.70 16
24 C 0.04 0.74 7.80 72.45 0.56 1.30 16
25 O -0.40 -12.49 10.61 -130.49 -1.38 -13.87 16
26 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16
27 H 0.03 1.08 8.04 -2.39 -0.02 1.06 16
28 H 0.07 2.22 6.87 -2.39 -0.02 2.20 16
29 H 0.26 16.87 8.31 -92.71 -0.77 16.10 16
30 H 0.09 2.85 8.07 -2.39 -0.02 2.83 16
31 H 0.03 1.45 3.36 -2.39 -0.01 1.44 16
32 H 0.38 7.01 8.79 -74.06 -0.65 6.36 16
33 H 0.06 2.08 7.42 -2.39 -0.02 2.06 16
34 H 0.13 2.43 7.89 -2.39 -0.02 2.41 16
35 H 0.07 0.91 7.72 -2.38 -0.02 0.89 16
36 H 0.09 0.72 6.02 -2.39 -0.01 0.70 16
37 H 0.10 0.77 7.89 -2.39 -0.02 0.75 16
38 H 0.13 1.39 6.66 -2.39 -0.02 1.37 16
39 H 0.05 1.32 8.05 -2.38 -0.02 1.31 16
40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16
41 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16
42 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16
43 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16
Total: -1.00 -94.23 340.51 1.65 -92.58
By element:
Atomic # 1 Polarization: 11.00 SS G_CDS: 0.31 Total: 11.32 kcal
Atomic # 6 Polarization: 13.71 SS G_CDS: 6.32 Total: 20.03 kcal
Atomic # 7 Polarization: -110.26 SS G_CDS: -3.84 Total: -114.10 kcal
Atomic # 8 Polarization: -57.67 SS G_CDS: -2.86 Total: -60.54 kcal
Atomic # 14 Polarization: 48.98 SS G_CDS: 1.72 Total: 50.70 kcal
Total: -94.23 1.65 -92.58 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001486325568.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.138 kcal
(2) G-P(sol) polarization free energy of solvation -94.234 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.371 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.582 kcal
(6) G-S(sol) free energy of system = (1) + (5) -123.720 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds