Wall clock time and date at job start Tue Mar 31 2020 02:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.48659 * 2 1 4 4 C 1.53053 * 109.50821 * 239.94666 * 2 1 3 5 5 N 1.46949 * 109.36424 * 181.61905 * 4 2 1 6 6 C 1.46898 * 111.00006 * 183.18953 * 5 4 2 7 7 C 1.52998 * 109.47252 * 169.99948 * 6 5 4 8 8 C 1.50703 * 109.47148 * 179.97438 * 7 6 5 9 9 O 1.20825 * 119.99978 * 359.97438 * 8 7 6 10 10 O 1.34232 * 120.00242 * 180.02562 * 8 7 6 11 11 C 1.46952 * 110.88327 * 59.32006 * 5 4 2 12 12 C 1.53049 * 109.36634 * 300.67845 * 11 5 4 13 13 N 1.46952 * 109.49231 * 120.04297 * 2 1 3 14 14 C 1.46898 * 110.99966 * 303.18164 * 13 2 1 15 15 C 1.53005 * 109.47342 * 169.99837 * 14 13 2 16 16 H 1.09001 * 109.46812 * 59.99568 * 15 14 13 17 17 O 1.42905 * 109.46812 * 299.99971 * 15 14 13 18 18 C 1.50703 * 109.47304 * 179.97438 * 15 14 13 19 19 H 1.07996 * 119.99751 * 359.97438 * 18 15 14 20 20 C 1.37880 * 119.99788 * 179.97438 * 18 15 14 21 21 N 1.31512 * 119.99711 * 180.02562 * 20 18 15 22 22 Si 1.86803 * 119.99913 * 359.97438 * 20 18 15 23 23 H 1.48504 * 109.46812 * 90.00228 * 22 20 18 24 24 H 1.48503 * 109.46545 * 209.99842 * 22 20 18 25 25 H 1.48497 * 109.47307 * 330.00018 * 22 20 18 26 26 H 1.08996 * 109.47249 * 299.95563 * 1 2 3 27 27 H 1.09004 * 109.46982 * 59.95281 * 1 2 3 28 28 H 1.09001 * 109.46826 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.48631 * 301.59043 * 4 2 1 30 30 H 1.09000 * 109.48754 * 61.63093 * 4 2 1 31 31 H 1.09004 * 109.47358 * 290.00216 * 6 5 4 32 32 H 1.08998 * 109.47380 * 49.99738 * 6 5 4 33 33 H 1.08994 * 109.47602 * 299.99810 * 7 6 5 34 34 H 1.08997 * 109.47356 * 60.00544 * 7 6 5 35 35 H 0.96694 * 116.99915 * 180.02562 * 10 8 7 36 36 H 1.09007 * 109.48805 * 60.64599 * 11 5 4 37 37 H 1.08998 * 109.49247 * 180.70661 * 11 5 4 38 38 H 1.08995 * 109.48899 * 298.43375 * 12 11 5 39 39 H 1.09003 * 109.49295 * 178.36593 * 12 11 5 40 40 H 1.09001 * 109.47520 * 49.99839 * 14 13 2 41 41 H 1.09002 * 109.47032 * 289.99688 * 14 13 2 42 42 H 0.96705 * 113.99788 * 299.99794 * 17 15 14 43 43 H 0.97000 * 119.99684 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0411 -0.7225 -1.2487 5 7 3.5101 -0.7546 -1.2261 6 6 4.0420 -1.3744 -2.4471 7 6 5.5569 -1.1684 -2.5053 8 6 6.1026 -1.8047 -3.7577 9 8 5.3565 -2.3659 -4.5247 10 8 7.4178 -1.7490 -4.0206 11 6 4.0004 -1.4482 -0.0269 12 6 3.4894 -0.7257 1.2218 13 7 2.0204 -0.6935 1.1992 14 6 1.4885 -0.0738 2.4202 15 6 1.8113 -0.9605 3.6246 16 1 2.8919 -1.0718 3.7145 17 8 1.2136 -2.2459 3.4435 18 6 1.2662 -0.3244 4.8773 19 1 0.7423 0.6182 4.8202 20 6 1.4364 -0.9460 6.0962 21 7 0.9602 -0.3911 7.1894 22 14 2.3420 -2.5768 6.1947 23 1 3.7913 -2.3266 6.4000 24 1 1.8106 -3.3700 7.3322 25 1 2.1439 -3.3302 4.9305 26 1 -0.3633 0.5131 0.8903 27 1 -0.3633 0.5146 -0.8896 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6552 -1.7417 -1.2626 30 1 1.7024 -0.1932 -2.1393 31 1 3.8205 -2.4417 -2.4391 32 1 3.5789 -0.9139 -3.3197 33 1 5.7785 -0.1012 -2.5135 34 1 6.0201 -1.6290 -1.6328 35 1 7.7207 -2.1712 -4.8361 36 1 3.6368 -2.4758 -0.0269 37 1 5.0904 -1.4479 -0.0267 38 1 3.8753 0.2935 1.2357 39 1 3.8279 -1.2552 2.1125 40 1 0.4079 0.0374 2.3302 41 1 1.9444 0.9066 2.5583 42 1 0.2508 -2.2231 3.3559 43 1 1.0802 -0.8282 8.0470 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594524990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:20 Heat of formation + Delta-G solvation = -153.987849 kcal Electronic energy + Delta-G solvation = -23582.064932 eV Core-core repulsion = 20047.264256 eV Total energy + Delta-G solvation = -3534.800675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.32355 -40.55603 -38.23285 -37.17320 -36.40718 -34.38451 -33.42331 -32.61649 -30.57365 -28.65805 -27.40042 -25.67163 -24.51247 -23.02365 -22.02233 -21.32808 -20.60121 -19.33226 -19.10611 -17.79811 -17.24954 -16.86717 -16.77039 -16.59718 -16.19076 -15.99940 -15.63049 -15.33181 -15.10337 -14.84331 -14.63396 -14.18185 -13.97562 -13.69064 -13.49541 -13.11960 -12.91407 -12.80064 -12.72349 -12.55873 -12.52710 -12.49526 -12.21688 -11.98449 -11.86353 -11.64627 -11.50842 -11.33260 -10.93899 -10.78559 -10.08631 -9.41399 -9.10233 -8.34007 -6.48150 1.21138 1.40561 1.46504 1.77391 2.04015 2.45548 2.96358 3.00708 3.05222 3.73105 3.84956 3.98075 4.04692 4.10523 4.19949 4.32805 4.37793 4.41830 4.45786 4.53322 4.63071 4.64566 4.73629 4.81378 4.82277 4.86900 4.92586 4.97341 5.02549 5.06890 5.22122 5.37843 5.48778 5.53555 5.62998 5.95247 5.96327 6.10734 6.22845 6.33210 6.64895 7.00187 7.24782 7.40284 8.80337 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.024317 B = 0.003616 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.185195 B = 7740.508045 C = 8483.349679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.081 3.919 3 H 0.038 0.962 4 C 0.072 3.928 5 N -0.541 5.541 6 C 0.072 3.928 7 C -0.108 4.108 8 C 0.489 3.511 9 O -0.555 6.555 10 O -0.513 6.513 11 C 0.061 3.939 12 C 0.054 3.946 13 N -0.531 5.531 14 C 0.051 3.949 15 C 0.211 3.789 16 H 0.047 0.953 17 O -0.572 6.572 18 C -0.565 4.565 19 H 0.035 0.965 20 C 0.028 3.972 21 N -0.941 5.941 22 Si 0.938 3.062 23 H -0.285 1.285 24 H -0.299 1.299 25 H -0.205 1.205 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.033 0.967 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.119 0.881 35 H 0.428 0.572 36 H 0.034 0.966 37 H 0.101 0.899 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.019 0.981 42 H 0.364 0.636 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.312 -1.789 -23.015 24.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 H 0.055 0.945 4 C -0.056 4.056 5 N -0.266 5.266 6 C -0.056 4.056 7 C -0.146 4.146 8 C 0.333 3.667 9 O -0.447 6.447 10 O -0.327 6.327 11 C -0.067 4.067 12 C -0.074 4.074 13 N -0.257 5.257 14 C -0.077 4.077 15 C 0.153 3.847 16 H 0.065 0.935 17 O -0.378 6.378 18 C -0.603 4.603 19 H 0.054 0.946 20 C -0.172 4.172 21 N -0.581 5.581 22 Si 0.763 3.237 23 H -0.211 1.211 24 H -0.226 1.226 25 H -0.126 1.126 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.114 0.886 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.148 0.852 34 H 0.137 0.863 35 H 0.289 0.711 36 H 0.052 0.948 37 H 0.119 0.881 38 H 0.053 0.947 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.037 0.963 42 H 0.211 0.789 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.587 -1.957 -22.690 24.710 hybrid contribution -0.234 -0.324 0.367 0.543 sum 9.353 -2.281 -22.323 24.311 Atomic orbital electron populations 1.21841 0.93301 1.02559 1.02269 1.21710 0.95971 0.95409 0.89670 0.94451 1.22140 0.86491 0.99466 0.97549 1.62125 1.08957 1.53514 1.01963 1.21769 0.93533 0.97648 0.92676 1.21322 0.95406 1.04468 0.93403 1.23596 0.80005 0.75752 0.87318 1.90732 1.60026 1.43316 1.50582 1.84506 1.25358 1.74119 1.48715 1.22207 1.00657 0.95309 0.88513 1.22164 0.87779 0.99270 0.98205 1.62173 1.08225 1.53641 1.01622 1.22562 1.00201 0.95126 0.89814 1.19476 0.93551 0.81428 0.90256 0.93522 1.86590 1.24607 1.31222 1.95365 1.21863 1.37897 1.07730 0.92788 0.94644 1.25851 0.95029 1.01339 0.94939 1.70087 1.47112 1.41445 0.99418 0.85992 0.77498 0.80625 0.79608 1.21130 1.22591 1.12640 0.93097 0.90139 0.92142 0.94568 0.88628 0.94821 0.89750 0.85232 0.86270 0.71060 0.94751 0.88052 0.94686 0.91304 0.90469 0.96283 0.78894 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.89 71.98 0.64 -2.72 16 2 C 0.08 2.12 2.56 44.92 0.12 2.23 16 3 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 4 C 0.07 1.58 4.89 86.31 0.42 2.00 16 5 N -0.54 -11.35 4.71 -895.75 -4.22 -15.56 16 6 C 0.07 1.27 4.25 86.30 0.37 1.64 16 7 C -0.11 -1.45 5.74 29.85 0.17 -1.28 16 8 C 0.49 7.65 8.33 71.24 0.59 8.24 16 9 O -0.56 -12.61 16.74 21.97 0.37 -12.24 16 10 O -0.51 -5.56 13.42 -51.44 -0.69 -6.25 16 11 C 0.06 1.41 5.41 86.31 0.47 1.88 16 12 C 0.05 1.60 5.41 86.31 0.47 2.07 16 13 N -0.53 -16.97 4.39 -870.47 -3.82 -20.79 16 14 C 0.05 1.94 4.33 86.31 0.37 2.32 16 15 C 0.21 9.57 2.19 29.85 0.07 9.64 16 16 H 0.05 2.18 5.92 -2.39 -0.01 2.17 16 17 O -0.57 -25.01 10.00 -148.98 -1.49 -26.50 16 18 C -0.56 -31.47 9.34 25.60 0.24 -31.23 16 19 H 0.04 2.17 7.99 -2.91 -0.02 2.15 16 20 C 0.03 1.61 5.47 84.66 0.46 2.07 16 21 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 22 Si 0.94 45.16 26.99 68.60 1.85 47.01 16 23 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 25 H -0.20 -9.42 5.30 99.48 0.53 -8.89 16 26 H 0.05 1.34 6.15 -2.39 -0.01 1.33 16 27 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 1.74 8.07 -2.39 -0.02 1.72 16 31 H 0.03 0.69 8.08 -2.38 -0.02 0.67 16 32 H 0.08 1.49 7.98 -2.39 -0.02 1.47 16 33 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.12 1.35 6.49 -2.39 -0.02 1.34 16 35 H 0.43 1.22 9.10 -74.06 -0.67 0.55 16 36 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.10 1.82 6.34 -2.39 -0.02 1.80 16 38 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 2.26 6.34 -2.39 -0.02 2.24 16 40 H 0.08 2.91 5.73 -2.39 -0.01 2.90 16 41 H 0.02 0.76 8.12 -2.39 -0.02 0.74 16 42 H 0.36 14.40 9.04 -74.05 -0.67 13.73 16 43 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -71.54 337.21 -3.82 -75.35 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -0.50 Total: 20.35 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 4.38 Total: -3.14 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -7.74 Total: -94.58 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -1.81 Total: -44.98 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.85 Total: 47.01 kcal Total: -71.54 -3.82 -75.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594524990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.634 kcal (2) G-P(sol) polarization free energy of solvation -71.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds