Wall clock time and date at job start Tue Mar 31 2020 03:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 119.99805 * 2 1 4 4 H 1.48498 * 109.47515 * 239.99814 * 3 2 1 5 5 H 1.48501 * 109.46973 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47322 * 119.99770 * 3 2 1 7 7 C 1.38943 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00119 * 200.78575 * 7 2 1 9 9 N 1.37097 * 120.00537 * 20.79279 * 7 2 1 10 10 C 1.46506 * 119.99419 * 16.60021 * 9 7 2 11 11 C 1.50698 * 109.47315 * 264.08653 * 10 9 7 12 12 O 1.20823 * 119.99901 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00133 * 180.02562 * 11 10 9 14 14 C 1.34769 * 120.00566 * 196.60364 * 9 7 2 15 15 O 1.21290 * 120.00369 * 179.97438 * 14 9 7 16 16 C 1.50707 * 119.99879 * 359.97438 * 14 9 7 17 17 N 1.46500 * 109.47322 * 179.97438 * 16 14 9 18 18 C 1.35041 * 126.03446 * 124.99773 * 17 16 14 19 19 C 1.35381 * 107.72555 * 179.97438 * 18 17 16 20 20 Cl 1.73600 * 126.04492 * 179.97438 * 19 18 17 21 21 C 1.39923 * 107.90642 * 359.97438 * 19 18 17 22 22 N 1.30854 * 108.21692 * 359.76000 * 21 19 18 23 23 H 0.97000 * 120.00603 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47011 * 24.09309 * 10 9 7 25 25 H 1.09006 * 109.46591 * 144.09134 * 10 9 7 26 26 H 0.96699 * 117.00071 * 180.02562 * 13 11 10 27 27 H 1.09001 * 109.47005 * 300.00095 * 16 14 9 28 28 H 1.09004 * 109.46901 * 59.99850 * 16 14 9 29 29 H 1.07997 * 126.13902 * 359.94500 * 18 17 16 30 30 H 1.08005 * 125.88918 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2830 2.7464 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0362 -1.2336 0.3325 9 7 1.3905 -2.3522 -0.4204 10 6 0.1527 -2.2742 -1.2003 11 6 -1.0312 -2.4250 -0.2802 12 8 -0.8588 -2.5811 0.9054 13 8 -2.2773 -2.3859 -0.7779 14 6 1.9210 -3.5532 -0.1167 15 8 1.3736 -4.5696 -0.4888 16 6 3.1945 -3.6334 0.6851 17 7 3.5609 -5.0383 0.8806 18 6 4.7430 -5.6039 0.5542 19 6 4.6817 -6.9127 0.8946 20 17 5.9454 -8.0838 0.6819 21 6 3.4196 -7.1546 1.4481 22 7 2.7493 -6.0308 1.4451 23 1 -0.4851 0.8400 0.0004 24 1 0.1009 -1.3090 -1.7040 25 1 0.1401 -3.0725 -1.9425 26 1 -3.0046 -2.4868 -0.1487 27 1 3.9936 -3.1202 0.1502 28 1 3.0436 -3.1593 1.6550 29 1 5.5859 -5.1021 0.1023 30 1 3.0617 -8.1043 1.8176 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068994.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:15 Heat of formation + Delta-G solvation = -54.991292 kcal Electronic energy + Delta-G solvation = -20576.981979 eV Core-core repulsion = 17014.258087 eV Total energy + Delta-G solvation = -3562.723892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.050 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.24456 -41.18251 -39.90724 -37.33071 -37.04398 -36.46890 -34.22933 -33.52906 -31.09988 -30.21077 -27.96167 -26.54154 -23.23445 -22.17204 -22.07023 -21.09946 -19.24830 -18.81217 -18.35042 -17.75762 -17.47045 -16.48075 -16.24416 -16.20530 -16.05429 -15.45138 -15.16603 -14.98985 -14.39258 -14.16217 -13.88795 -13.44231 -13.31245 -13.17219 -12.64036 -12.59096 -12.45512 -12.27042 -12.19695 -12.11771 -11.57288 -11.37997 -10.99390 -10.91126 -10.32827 -9.95395 -9.34651 -8.41283 -5.98414 0.80429 1.03697 1.43099 1.54188 1.63168 1.69523 1.71725 1.79340 1.85292 2.28052 2.50913 2.80445 3.11244 3.73062 3.89237 4.03302 4.10026 4.33617 4.41997 4.59502 4.68019 4.70606 4.83046 5.37940 5.44210 5.62190 5.87046 5.89341 6.26608 6.65209 7.03019 7.32049 7.41397 7.79878 8.66011 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.021312 B = 0.004775 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.483821 B = 5862.104759 C = 6877.124171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.002 4.002 3 Si 0.999 3.001 4 H -0.258 1.258 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.363 4.363 8 H 0.129 0.871 9 N -0.434 5.434 10 C 0.156 3.844 11 C 0.500 3.500 12 O -0.550 6.550 13 O -0.523 6.523 14 C 0.443 3.557 15 O -0.612 6.612 16 C 0.140 3.860 17 N -0.353 5.353 18 C 0.079 3.921 19 C -0.199 4.199 20 Cl -0.035 7.035 21 C 0.047 3.953 22 N -0.306 5.306 23 H 0.273 0.727 24 H 0.126 0.874 25 H 0.088 0.912 26 H 0.412 0.588 27 H 0.161 0.839 28 H 0.111 0.889 29 H 0.221 0.779 30 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.039 -3.804 -1.451 9.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.204 4.204 3 Si 0.822 3.178 4 H -0.183 1.183 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.489 4.489 8 H 0.147 0.853 9 N -0.153 5.153 10 C 0.030 3.970 11 C 0.342 3.658 12 O -0.439 6.439 13 O -0.335 6.335 14 C 0.232 3.768 15 O -0.498 6.498 16 C 0.016 3.984 17 N -0.135 5.135 18 C -0.069 4.069 19 C -0.238 4.238 20 Cl -0.007 7.007 21 C -0.140 4.140 22 N -0.127 5.127 23 H 0.083 0.917 24 H 0.143 0.857 25 H 0.105 0.895 26 H 0.271 0.729 27 H 0.178 0.822 28 H 0.129 0.871 29 H 0.237 0.763 30 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 7.930 -3.505 -1.333 8.772 hybrid contribution -0.026 0.326 0.441 0.549 sum 7.905 -3.179 -0.893 8.567 Atomic orbital electron populations 1.69938 1.07829 1.28974 1.46703 1.26157 0.95859 1.03232 0.95184 0.84894 0.77591 0.75713 0.79585 1.18251 1.21863 1.19070 1.20150 0.98102 0.84266 1.46352 0.85333 1.43595 1.20050 1.05513 1.46144 1.20481 0.80839 1.04186 0.91484 1.23833 0.84187 0.69210 0.88527 1.90548 1.86428 1.47353 1.19562 1.84448 1.16980 1.85681 1.46440 1.20711 0.89215 0.83131 0.83729 1.90602 1.65507 1.35616 1.58116 1.21515 0.97856 0.76404 1.02621 1.48134 1.10350 1.08684 1.46311 1.22860 0.91158 0.93185 0.99683 1.20773 0.93668 0.91596 1.17771 1.98295 1.49339 1.56385 1.96688 1.24305 0.91707 0.98224 0.99760 1.77652 1.18630 0.97171 1.19251 0.91672 0.85665 0.89454 0.72906 0.82188 0.87074 0.76253 0.77654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -43.97 9.24 21.66 0.20 -43.77 16 2 C 0.00 -0.08 4.90 84.92 0.42 0.34 16 3 Si 1.00 35.27 29.60 68.60 2.03 37.30 16 4 H -0.26 -8.54 7.11 99.48 0.71 -7.84 16 5 H -0.29 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 7 C -0.36 -16.11 9.15 84.04 0.77 -15.34 16 8 H 0.13 4.88 6.55 -2.91 -0.02 4.86 16 9 N -0.43 -20.31 2.18 -639.59 -1.39 -21.70 16 10 C 0.16 7.23 5.14 85.63 0.44 7.67 16 11 C 0.50 24.28 6.50 71.24 0.46 24.74 16 12 O -0.55 -30.86 16.80 21.97 0.37 -30.49 16 13 O -0.52 -20.67 13.42 -51.41 -0.69 -21.36 16 14 C 0.44 20.43 7.45 87.66 0.65 21.08 16 15 O -0.61 -32.44 15.40 -3.06 -0.05 -32.49 16 16 C 0.14 4.92 5.43 85.64 0.47 5.39 16 17 N -0.35 -12.47 3.40 -351.65 -1.19 -13.67 16 18 C 0.08 2.14 11.43 83.54 0.96 3.09 16 19 C -0.20 -5.55 6.65 22.02 0.15 -5.40 16 20 Cl -0.04 -0.79 29.30 -2.72 -0.08 -0.87 16 21 C 0.05 1.50 12.02 85.25 1.02 2.53 16 22 N -0.31 -12.35 11.66 -56.98 -0.66 -13.01 16 23 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 24 H 0.13 5.72 6.35 -2.39 -0.02 5.70 16 25 H 0.09 3.87 7.61 -2.38 -0.02 3.85 16 26 H 0.41 12.53 9.10 -74.06 -0.67 11.86 16 27 H 0.16 4.11 7.63 -2.39 -0.02 4.09 16 28 H 0.11 3.96 8.10 -2.38 -0.02 3.94 16 29 H 0.22 3.85 8.06 -2.91 -0.02 3.83 16 30 H 0.21 5.22 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -71.17 290.75 4.40 -66.76 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.54 Total: 29.20 kcal Atomic # 6 Polarization: 38.76 SS G_CDS: 5.33 Total: 44.09 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -3.05 Total: -92.15 kcal Atomic # 8 Polarization: -83.97 SS G_CDS: -0.37 Total: -84.33 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -71.17 4.40 -66.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068994.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.771 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds