Wall clock time and date at job start Tue Mar 31 2020 02:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47482 * 2 1 4 4 C 1.46499 * 119.99658 * 90.00117 * 3 2 1 5 5 C 1.50701 * 109.46992 * 90.00121 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 C 1.34775 * 120.00005 * 270.00252 * 3 2 1 14 14 O 1.21285 * 119.99996 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00318 * 0.02562 * 13 3 2 16 16 N 1.46895 * 109.47428 * 180.02562 * 15 13 3 17 17 C 1.47848 * 110.99707 * 290.84088 * 16 15 13 18 18 C 1.54907 * 104.79483 * 213.63572 * 17 16 15 19 19 H 1.08999 * 110.99270 * 278.97724 * 18 17 16 20 20 O 1.42902 * 111.02390 * 155.17521 * 18 17 16 21 21 C 1.55145 * 101.65496 * 37.07079 * 18 17 16 22 22 H 1.08994 * 110.85482 * 82.79970 * 21 18 17 23 23 C 1.52996 * 110.70701 * 205.96418 * 21 18 17 24 24 O 1.42893 * 109.47531 * 180.02562 * 23 21 18 25 25 C 1.47442 * 111.00280 * 169.99670 * 16 15 13 26 26 H 1.09005 * 109.46883 * 300.00131 * 1 2 3 27 27 H 1.09005 * 109.47362 * 59.99236 * 1 2 3 28 28 H 1.08993 * 109.47491 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46784 * 240.00274 * 2 1 3 30 30 H 1.08994 * 109.46982 * 120.00586 * 2 1 3 31 31 H 1.09002 * 109.47391 * 330.00112 * 4 3 2 32 32 H 1.09001 * 109.46813 * 210.00168 * 4 3 2 33 33 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.47054 * 299.99977 * 15 13 3 35 35 H 1.09003 * 109.47164 * 59.99309 * 15 13 3 36 36 H 1.09004 * 110.37140 * 332.46320 * 17 16 15 37 37 H 1.08998 * 110.37478 * 94.80431 * 17 16 15 38 38 H 0.96696 * 113.99893 * 67.71324 * 20 18 17 39 39 H 1.09001 * 109.47232 * 300.05458 * 23 21 18 40 40 H 1.09006 * 109.47363 * 60.04602 * 23 21 18 41 41 H 0.96699 * 114.00506 * 180.02562 * 24 23 21 42 42 H 1.08998 * 109.89061 * 242.66207 * 25 16 15 43 43 H 1.08996 * 109.88654 * 3.85318 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7037 6 1 4.3430 1.2307 1.0957 7 6 4.1496 2.3902 2.8775 8 7 3.3496 3.1262 3.6176 9 14 5.9140 2.0971 3.4162 10 1 6.6016 1.2419 2.4157 11 1 6.6212 3.3985 3.5240 12 1 5.9219 1.4184 4.7371 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1602 -1.1672 15 6 1.9912 1.3064 -2.4723 16 7 2.3101 2.2062 -3.5888 17 6 1.3340 3.3135 -3.6723 18 6 1.2037 3.6126 -5.1866 19 1 2.0256 4.2391 -5.5331 20 8 -0.0570 4.2165 -5.4833 21 6 1.2950 2.1888 -5.7963 22 1 0.3265 1.6900 -5.7638 23 6 1.8231 2.2476 -7.2310 24 8 1.8960 0.9247 -7.7664 25 6 2.3059 1.4789 -4.8714 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5818 1.6876 2.0284 32 1 2.0957 3.1410 1.1384 33 1 3.6757 3.5166 4.4436 34 1 2.6211 0.4186 -2.5303 35 1 0.9431 1.0126 -2.5298 36 1 0.3726 3.0035 -3.2626 37 1 1.7082 4.1899 -3.1432 38 1 -0.1607 5.1078 -5.1228 39 1 1.1507 2.8504 -7.8414 40 1 2.8167 2.6958 -7.2344 41 1 2.2239 0.8857 -8.6752 42 1 3.3001 1.5076 -5.3173 43 1 1.9990 0.4455 -4.7106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001618431083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:33 Heat of formation + Delta-G solvation = -123.426296 kcal Electronic energy + Delta-G solvation = -23651.736892 eV Core-core repulsion = 20118.261465 eV Total energy + Delta-G solvation = -3533.475427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.96096 -38.63574 -36.81220 -35.98411 -35.13020 -32.82799 -31.97155 -30.06324 -28.95730 -27.80595 -26.28762 -24.37161 -22.99525 -22.45320 -21.24931 -20.45983 -18.44181 -17.72215 -17.37361 -16.66114 -16.32392 -15.86472 -15.39743 -15.21221 -14.98116 -14.52373 -14.07518 -13.98969 -13.44912 -13.30577 -13.18026 -12.92891 -12.61189 -12.52558 -12.34344 -11.96823 -11.82139 -11.60952 -11.44554 -11.16993 -11.10078 -10.86279 -10.70986 -10.69703 -10.51539 -10.24813 -10.14412 -10.08569 -9.57339 -8.85252 -8.40991 -8.17255 -7.60190 -6.01526 -4.05724 3.31866 3.39111 3.42501 3.50064 3.56321 3.78285 4.00540 4.38711 4.41743 4.50969 4.69511 4.76632 5.07492 5.11486 5.15225 5.20712 5.30870 5.33269 5.34383 5.43629 5.56186 5.58348 5.65234 5.71161 5.79304 5.85132 6.00170 6.04664 6.16826 6.24702 6.48461 6.89513 6.95633 7.16457 7.33918 7.43574 7.47916 7.60749 7.95841 8.27448 8.48282 8.95036 9.18111 9.59533 11.06547 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.003711 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.528700 B = 7543.968108 C = 7709.000321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.507 3.493 14 O -0.525 6.525 15 C 0.032 3.968 16 N -0.507 5.507 17 C 0.021 3.979 18 C 0.098 3.902 19 H 0.076 0.924 20 O -0.563 6.563 21 C -0.102 4.102 22 H 0.090 0.910 23 C 0.089 3.911 24 O -0.573 6.573 25 C 0.054 3.946 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.383 0.617 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.379 0.621 42 H 0.083 0.917 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.338 -4.026 -19.333 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.292 3.708 14 O -0.401 6.401 15 C -0.099 4.099 16 N -0.232 5.232 17 C -0.107 4.107 18 C 0.038 3.962 19 H 0.094 0.906 20 O -0.368 6.368 21 C -0.121 4.121 22 H 0.108 0.892 23 C 0.011 3.989 24 O -0.378 6.378 25 C -0.074 4.074 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.231 0.769 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.226 0.774 42 H 0.101 0.899 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.955 -3.822 -18.743 20.035 hybrid contribution 0.455 0.079 0.116 0.476 sum -5.501 -3.743 -18.628 19.780 Atomic orbital electron populations 1.22223 0.96930 1.01364 1.02193 1.21397 0.93382 0.84395 1.02610 1.48255 1.64158 1.13217 1.07692 1.19236 0.96208 0.93560 0.78106 1.21495 0.96952 1.31652 1.06122 0.92409 1.24937 0.97834 0.94966 0.96434 1.69945 1.35580 1.33647 1.14350 0.86448 0.84714 0.78043 0.78247 1.19791 1.20907 1.21024 1.20103 0.78844 0.87145 0.84659 1.90644 1.44703 1.17864 1.86890 1.22354 1.00358 0.96147 0.91077 1.63249 1.48657 1.09458 1.01793 1.23717 0.94563 0.96753 0.95657 1.22938 0.85926 0.93257 0.94036 0.90589 1.86454 1.35983 1.35083 1.79269 1.22315 1.00629 0.95351 0.93820 0.89156 1.22117 0.99369 0.83896 0.93556 1.86476 1.89460 1.28283 1.33578 1.22859 0.99173 0.96825 0.88522 0.92009 0.93321 0.92184 0.91924 0.89913 0.95139 0.94009 0.92844 0.88411 0.92420 0.92993 0.88379 0.76898 0.93189 0.93172 0.77407 0.89857 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.73 5.93 -4.04 -0.02 1.70 16 3 N -0.60 -12.79 2.46 -175.06 -0.43 -13.22 16 4 C 0.25 6.53 5.16 -5.19 -0.03 6.51 16 5 C -0.52 -15.01 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.51 10.70 7.47 -10.99 -0.08 10.62 16 14 O -0.53 -13.28 14.61 5.55 0.08 -13.20 16 15 C 0.03 0.51 3.61 -4.98 -0.02 0.49 16 16 N -0.51 -7.78 4.86 -232.69 -1.13 -8.91 16 17 C 0.02 0.30 5.48 -2.30 -0.01 0.29 16 18 C 0.10 1.12 3.87 -24.59 -0.10 1.02 16 19 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 20 O -0.56 -6.02 13.47 -35.23 -0.47 -6.49 16 21 C -0.10 -1.14 2.97 -88.79 -0.26 -1.41 16 22 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 23 C 0.09 0.81 6.36 37.16 0.24 1.05 16 24 O -0.57 -5.24 13.50 -35.23 -0.48 -5.71 16 25 C 0.05 0.66 6.31 -2.83 -0.02 0.65 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 30 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.10 1.40 7.29 -51.93 -0.38 1.02 16 35 H 0.06 0.81 6.89 -51.93 -0.36 0.45 16 36 H 0.05 0.77 7.62 -51.93 -0.40 0.37 16 37 H 0.10 1.61 7.37 -51.93 -0.38 1.23 16 38 H 0.38 2.63 9.12 45.56 0.42 3.04 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.05 0.41 8.06 -51.93 -0.42 -0.01 16 41 H 0.38 1.67 9.12 45.56 0.42 2.09 16 42 H 0.08 1.00 7.77 -51.93 -0.40 0.60 16 43 H 0.06 0.73 7.55 -51.93 -0.39 0.34 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -35.66 350.03 -7.27 -42.93 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.48 Total: 3.02 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -0.34 Total: 5.29 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.83 Total: -48.23 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.87 Total: -25.40 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.66 -7.27 -42.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618431083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.495 kcal (2) G-P(sol) polarization free energy of solvation -35.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds