Wall clock time and date at job start Tue Mar 31 2020 02:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47482 * 2 1 4 4 C 1.46499 * 119.99658 * 90.00117 * 3 2 1 5 5 C 1.50701 * 109.46992 * 90.00121 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 C 1.34775 * 120.00005 * 270.00252 * 3 2 1 14 14 O 1.21285 * 119.99996 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00318 * 0.02562 * 13 3 2 16 16 N 1.46895 * 109.47428 * 180.02562 * 15 13 3 17 17 C 1.47848 * 110.99707 * 290.84088 * 16 15 13 18 18 C 1.54907 * 104.79483 * 213.63572 * 17 16 15 19 19 H 1.08999 * 110.99270 * 278.97724 * 18 17 16 20 20 O 1.42902 * 111.02390 * 155.17521 * 18 17 16 21 21 C 1.55145 * 101.65496 * 37.07079 * 18 17 16 22 22 H 1.08994 * 110.85482 * 82.79970 * 21 18 17 23 23 C 1.52996 * 110.70701 * 205.96418 * 21 18 17 24 24 O 1.42893 * 109.47531 * 180.02562 * 23 21 18 25 25 C 1.47442 * 111.00280 * 169.99670 * 16 15 13 26 26 H 1.09005 * 109.46883 * 300.00131 * 1 2 3 27 27 H 1.09005 * 109.47362 * 59.99236 * 1 2 3 28 28 H 1.08993 * 109.47491 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46784 * 240.00274 * 2 1 3 30 30 H 1.08994 * 109.46982 * 120.00586 * 2 1 3 31 31 H 1.09002 * 109.47391 * 330.00112 * 4 3 2 32 32 H 1.09001 * 109.46813 * 210.00168 * 4 3 2 33 33 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.47054 * 299.99977 * 15 13 3 35 35 H 1.09003 * 109.47164 * 59.99309 * 15 13 3 36 36 H 1.09004 * 110.37140 * 332.46320 * 17 16 15 37 37 H 1.08998 * 110.37478 * 94.80431 * 17 16 15 38 38 H 0.96696 * 113.99893 * 67.71324 * 20 18 17 39 39 H 1.09001 * 109.47232 * 300.05458 * 23 21 18 40 40 H 1.09006 * 109.47363 * 60.04602 * 23 21 18 41 41 H 0.96699 * 114.00506 * 180.02562 * 24 23 21 42 42 H 1.08998 * 109.89061 * 242.66207 * 25 16 15 43 43 H 1.08996 * 109.88654 * 3.85318 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7037 6 1 4.3430 1.2307 1.0957 7 6 4.1496 2.3902 2.8775 8 7 3.3496 3.1262 3.6176 9 14 5.9140 2.0971 3.4162 10 1 6.6016 1.2419 2.4157 11 1 6.6212 3.3985 3.5240 12 1 5.9219 1.4184 4.7371 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1602 -1.1672 15 6 1.9912 1.3064 -2.4723 16 7 2.3101 2.2062 -3.5888 17 6 1.3340 3.3135 -3.6723 18 6 1.2037 3.6126 -5.1866 19 1 2.0256 4.2391 -5.5331 20 8 -0.0570 4.2165 -5.4833 21 6 1.2950 2.1888 -5.7963 22 1 0.3265 1.6900 -5.7638 23 6 1.8231 2.2476 -7.2310 24 8 1.8960 0.9247 -7.7664 25 6 2.3059 1.4789 -4.8714 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5818 1.6876 2.0284 32 1 2.0957 3.1410 1.1384 33 1 3.6757 3.5166 4.4436 34 1 2.6211 0.4186 -2.5303 35 1 0.9431 1.0126 -2.5298 36 1 0.3726 3.0035 -3.2626 37 1 1.7082 4.1899 -3.1432 38 1 -0.1607 5.1078 -5.1228 39 1 1.1507 2.8504 -7.8414 40 1 2.8167 2.6958 -7.2344 41 1 2.2239 0.8857 -8.6752 42 1 3.3001 1.5076 -5.3173 43 1 1.9990 0.4455 -4.7106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001618431083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:33 Heat of formation + Delta-G solvation = -154.913926 kcal Electronic energy + Delta-G solvation = -23653.102298 eV Core-core repulsion = 20118.261465 eV Total energy + Delta-G solvation = -3534.840833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19849 -40.00700 -37.52467 -37.09155 -36.68707 -34.91922 -33.03148 -31.60611 -30.14575 -29.27968 -27.78172 -25.51539 -24.60931 -23.93548 -22.38424 -21.36034 -19.97580 -18.67386 -18.56190 -18.14228 -17.96085 -17.28886 -16.59689 -16.47952 -16.33062 -16.03773 -15.23913 -15.12449 -14.80125 -14.60635 -14.36757 -14.18435 -14.04908 -13.71069 -13.48885 -13.42067 -13.27118 -13.07809 -12.73630 -12.69807 -12.65823 -12.49358 -12.17820 -11.96618 -11.89171 -11.68049 -11.62120 -11.07275 -10.87628 -10.64835 -10.51706 -9.45789 -9.29747 -8.22180 -6.36868 1.36020 1.38636 1.50629 1.86297 2.21104 2.40488 2.79240 3.07053 3.08326 3.40842 3.45085 3.77778 3.89512 3.92543 4.08143 4.15589 4.23590 4.30944 4.36062 4.42127 4.49303 4.52982 4.61529 4.67243 4.82018 4.89771 4.92249 4.94950 4.97954 5.04436 5.19072 5.21562 5.35582 5.58658 5.78338 5.86951 5.95124 6.07607 6.71563 6.74497 6.82935 6.93193 7.29447 7.53575 8.84979 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.003711 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.528700 B = 7543.968108 C = 7709.000321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.497 3.503 14 O -0.579 6.579 15 C 0.047 3.953 16 N -0.530 5.530 17 C 0.023 3.977 18 C 0.110 3.890 19 H 0.087 0.913 20 O -0.570 6.570 21 C -0.099 4.099 22 H 0.080 0.920 23 C 0.094 3.906 24 O -0.589 6.589 25 C 0.057 3.943 26 H 0.038 0.962 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.020 0.980 32 H -0.005 1.005 33 H 0.267 0.733 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.398 0.602 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.399 0.601 42 H 0.088 0.912 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.941 -5.931 -21.221 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.144 3.856 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.285 3.715 14 O -0.458 6.458 15 C -0.084 4.084 16 N -0.255 5.255 17 C -0.106 4.106 18 C 0.050 3.950 19 H 0.105 0.895 20 O -0.377 6.377 21 C -0.118 4.118 22 H 0.099 0.901 23 C 0.016 3.984 24 O -0.398 6.398 25 C -0.069 4.069 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.038 0.962 32 H 0.013 0.987 33 H 0.076 0.924 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.249 0.751 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.249 0.751 42 H 0.106 0.894 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.584 -5.767 -20.666 22.171 hybrid contribution 0.284 0.691 0.695 1.021 sum -5.300 -5.076 -19.971 21.276 Atomic orbital electron populations 1.22146 0.94750 1.03477 1.01430 1.21735 0.95154 0.81491 1.03925 1.48288 1.64236 1.15108 1.06196 1.18658 0.95224 0.91393 0.80370 1.21749 0.97884 1.31855 1.06452 0.92942 1.25867 1.02433 0.94475 0.96438 1.70062 1.37705 1.34322 1.14826 0.85355 0.78982 0.78002 0.78378 1.19146 1.20778 1.19349 1.21127 0.77452 0.86764 0.86176 1.90614 1.47041 1.20363 1.87805 1.22245 1.02195 0.95895 0.88060 1.63145 1.49324 1.10094 1.02947 1.23609 0.93643 0.95582 0.97734 1.22798 0.86579 0.93935 0.91653 0.89526 1.86422 1.35651 1.36404 1.79236 1.22274 0.99904 0.94559 0.95060 0.90130 1.22019 1.00004 0.84177 0.92185 1.86416 1.89768 1.28166 1.35407 1.22882 0.99855 0.97099 0.87102 0.94233 0.92651 0.88535 0.88343 0.90820 0.96168 0.98724 0.92442 0.86154 0.90007 0.93834 0.91476 0.75108 0.92463 0.92075 0.75050 0.89393 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 10.24 71.98 0.74 -3.34 16 2 C 0.10 3.09 5.93 86.38 0.51 3.60 16 3 N -0.61 -26.29 2.46 -826.16 -2.03 -28.32 16 4 C 0.27 14.64 5.16 85.63 0.44 15.09 16 5 C -0.54 -31.88 9.39 25.60 0.24 -31.63 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.39 5.46 84.66 0.46 0.85 16 8 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 9 Si 0.97 45.73 29.54 68.60 2.03 47.75 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C 0.50 21.31 7.47 87.66 0.65 21.97 16 14 O -0.58 -30.70 14.61 -3.05 -0.04 -30.74 16 15 C 0.05 1.41 3.61 85.56 0.31 1.72 16 16 N -0.53 -15.76 4.86 -890.09 -4.33 -20.09 16 17 C 0.02 0.66 5.48 86.77 0.48 1.13 16 18 C 0.11 2.37 3.87 31.98 0.12 2.50 16 19 H 0.09 1.69 8.05 -2.39 -0.02 1.67 16 20 O -0.57 -11.39 13.47 -148.98 -2.01 -13.39 16 21 C -0.10 -2.00 2.97 -9.61 -0.03 -2.03 16 22 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 23 C 0.09 1.46 6.36 71.98 0.46 1.92 16 24 O -0.59 -9.06 13.50 -148.98 -2.01 -11.07 16 25 C 0.06 1.29 6.31 86.65 0.55 1.83 16 26 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.05 1.34 7.22 -2.38 -0.02 1.32 16 28 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.10 2.36 6.44 -2.39 -0.02 2.35 16 30 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 31 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 32 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 33 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.12 3.08 7.29 -2.38 -0.02 3.06 16 35 H 0.08 2.09 6.89 -2.39 -0.02 2.07 16 36 H 0.04 1.30 7.62 -2.39 -0.02 1.28 16 37 H 0.07 2.33 7.37 -2.39 -0.02 2.32 16 38 H 0.40 5.06 9.12 -74.06 -0.68 4.38 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.82 8.06 -2.38 -0.02 0.80 16 41 H 0.40 2.34 9.12 -74.06 -0.68 1.67 16 42 H 0.09 1.90 7.77 -2.39 -0.02 1.88 16 43 H 0.07 1.48 7.55 -2.39 -0.02 1.46 16 Total: -1.00 -80.31 350.03 -3.51 -83.83 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -0.33 Total: 15.25 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 4.93 Total: 13.60 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -6.07 Total: -105.22 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -4.06 Total: -55.20 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -80.31 -3.51 -83.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618431083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.087 kcal (2) G-P(sol) polarization free energy of solvation -80.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds