Wall clock time and date at job start Tue Mar 31 2020 03:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00389 * 2 1 4 4 H 1.48498 * 109.47075 * 264.87361 * 3 2 1 5 5 H 1.48506 * 109.47044 * 24.87231 * 3 2 1 6 6 H 1.48503 * 109.47286 * 144.87220 * 3 2 1 7 7 C 1.37879 * 119.99536 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00160 * 4.44131 * 7 2 1 9 9 C 1.50712 * 119.99773 * 184.43366 * 7 2 1 10 10 O 1.42894 * 110.91095 * 60.75469 * 9 7 2 11 11 C 1.55156 * 111.00158 * 184.65684 * 9 7 2 12 12 C 1.54320 * 103.10243 * 153.66781 * 11 9 7 13 13 N 1.47027 * 107.26889 * 337.71287 * 12 11 9 14 14 S 1.65596 * 125.64792 * 178.90441 * 13 12 11 15 15 O 1.42102 * 106.40455 * 203.56533 * 14 13 12 16 16 O 1.42105 * 106.40359 * 336.48843 * 14 13 12 17 17 C 1.76202 * 107.21839 * 90.02652 * 14 13 12 18 18 N 1.30502 * 125.64985 * 90.02538 * 17 14 13 19 19 C 1.34123 * 109.25635 * 180.02562 * 18 17 14 20 20 C 1.34663 * 108.02342 * 359.97438 * 19 18 17 21 21 N 1.35035 * 125.65192 * 269.72122 * 17 14 13 22 22 H 0.97006 * 126.39969 * 359.97438 * 21 17 14 23 23 C 1.47424 * 108.70302 * 358.94444 * 13 12 11 24 24 H 0.97004 * 119.99590 * 0.02562 * 1 2 3 25 25 H 0.96694 * 114.00711 * 62.45489 * 10 9 7 26 26 H 1.09002 * 110.72525 * 35.21352 * 11 9 7 27 27 H 1.09008 * 110.71578 * 272.11610 * 11 9 7 28 28 H 1.09003 * 109.88628 * 97.13091 * 12 11 9 29 29 H 1.09000 * 109.88188 * 218.30253 * 12 11 9 30 30 H 1.08010 * 125.98717 * 180.02562 * 19 18 17 31 31 H 1.08003 * 126.59535 * 179.97438 * 20 19 18 32 32 H 1.09003 * 110.36495 * 142.96662 * 23 13 12 33 33 H 1.09002 * 110.36520 * 265.28673 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6051 1.9838 -1.3945 5 1 1.3967 2.6815 0.5889 6 1 3.4884 1.4738 0.8056 7 6 2.0044 -1.1941 0.0005 8 1 1.4668 -2.1280 -0.0715 9 6 3.5081 -1.1961 0.1014 10 8 3.9382 -0.5896 1.3217 11 6 4.0726 -2.6350 -0.0337 12 6 5.4959 -2.4022 -0.5830 13 7 5.5044 -1.0807 -1.2274 14 16 6.8137 -0.3659 -1.9462 15 8 6.5661 1.0333 -1.9303 16 8 7.9656 -0.9580 -1.3614 17 6 6.8094 -0.8526 -3.6396 18 7 6.2142 -0.2176 -4.6121 19 6 6.4224 -0.8751 -5.7624 20 6 7.1757 -1.9583 -5.4928 21 7 7.4263 -1.9414 -4.1472 22 1 7.9477 -2.5914 -3.6506 23 6 4.1543 -0.4970 -1.1267 24 1 -0.4850 0.8401 -0.0004 25 1 3.6425 -1.0533 2.1170 26 1 3.4783 -3.2180 -0.7373 27 1 4.1101 -3.1274 0.9381 28 1 6.2165 -2.4206 0.2346 29 1 5.7417 -3.1725 -1.3140 30 1 6.0517 -0.5858 -6.7348 31 1 7.5193 -2.6964 -6.2024 32 1 4.2175 0.5785 -0.9607 33 1 3.5809 -0.7095 -2.0290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001655797434.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:57 Heat of formation + Delta-G solvation = -76.336813 kcal Electronic energy + Delta-G solvation = -21634.944547 eV Core-core repulsion = 18209.171844 eV Total energy + Delta-G solvation = -3425.772703 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.20497 -40.02344 -38.64347 -37.27535 -36.19483 -34.49874 -33.85960 -31.36150 -30.89532 -30.24160 -26.63301 -24.06598 -23.44760 -22.69775 -21.59656 -20.90463 -19.94023 -19.25489 -18.84299 -17.42254 -17.16100 -16.72737 -16.46389 -16.17010 -15.96841 -15.29625 -15.18585 -14.82439 -14.78133 -14.64257 -14.09255 -13.70334 -13.55284 -13.46182 -13.35510 -13.03526 -12.88040 -12.58413 -12.27455 -12.17278 -11.87049 -11.48715 -11.46388 -10.97785 -10.79412 -10.23628 -10.17891 -10.00278 -8.39250 -6.50133 -1.07694 0.34756 1.33074 1.41384 1.57424 1.63842 1.81435 1.98303 2.34647 2.43784 2.96463 3.04701 3.44866 3.73398 3.92328 4.10082 4.19365 4.29246 4.34292 4.41532 4.57697 4.67575 4.77417 4.99767 5.01657 5.19503 5.29376 5.42539 5.46377 5.57030 5.98221 6.10504 6.57811 6.62837 7.20925 7.37687 8.74309 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.006503 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.892383 B = 4304.677543 C = 4526.243787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.051 3.949 3 Si 0.898 3.102 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.220 1.220 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.212 3.788 10 O -0.578 6.578 11 C -0.132 4.132 12 C 0.119 3.881 13 N -1.000 6.000 14 S 2.748 3.252 15 O -0.970 6.970 16 O -0.952 6.952 17 C -0.379 4.379 18 N -0.438 5.438 19 C -0.063 4.063 20 C 0.037 3.963 21 N -0.502 5.502 22 H 0.445 0.555 23 C 0.122 3.878 24 H 0.268 0.732 25 H 0.380 0.620 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.206 0.794 31 H 0.249 0.751 32 H 0.050 0.950 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.195 -10.044 -8.692 20.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.151 4.151 3 Si 0.724 3.276 4 H -0.210 1.210 5 H -0.225 1.225 6 H -0.142 1.142 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.170 3.830 10 O -0.387 6.387 11 C -0.172 4.172 12 C -0.005 4.005 13 N -0.841 5.841 14 S 2.834 3.166 15 O -0.960 6.960 16 O -0.942 6.942 17 C -0.719 4.719 18 N -0.161 5.161 19 C -0.216 4.216 20 C -0.105 4.105 21 N -0.107 5.107 22 H 0.288 0.712 23 C -0.003 4.003 24 H 0.077 0.923 25 H 0.230 0.770 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.223 0.777 31 H 0.265 0.735 32 H 0.068 0.932 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.596 -8.207 -8.604 20.416 hybrid contribution -0.240 -0.378 -0.369 0.580 sum 16.356 -8.584 -8.973 20.536 Atomic orbital electron populations 1.70001 1.07775 1.28174 1.50531 1.25486 0.94883 1.01857 0.92843 0.86712 0.81227 0.80353 0.79260 1.21012 1.22475 1.14233 1.21482 0.90591 0.93690 1.51757 0.92157 1.20108 0.90679 0.90056 0.82131 1.86470 1.78724 1.57181 1.16312 1.23113 0.94026 0.97060 1.02954 1.22032 0.99269 0.81560 0.97640 1.58412 1.24609 1.31471 1.69616 1.00384 0.71941 0.72592 0.71650 1.93563 1.85328 1.30633 1.86456 1.93562 1.46615 1.78917 1.75091 1.36594 1.13268 0.99388 1.22631 1.70183 1.17348 1.28646 0.99892 1.23459 1.04512 0.95639 0.98030 1.24232 0.99760 1.01840 0.84621 1.43132 1.38044 1.20155 1.09391 0.71176 1.22584 0.80857 0.97107 0.99776 0.92317 0.77046 0.90022 0.88176 0.89671 0.88951 0.77701 0.73477 0.93196 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.65 13.96 21.45 0.30 -55.35 16 2 C 0.05 2.87 5.47 84.66 0.46 3.34 16 3 Si 0.90 46.18 23.97 68.60 1.64 47.83 16 4 H -0.28 -14.81 7.09 99.48 0.71 -14.11 16 5 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 6 H -0.22 -11.07 5.49 99.48 0.55 -10.52 16 7 C -0.54 -27.97 8.88 25.60 0.23 -27.74 16 8 H 0.06 3.35 8.03 -2.91 -0.02 3.33 16 9 C 0.21 9.07 0.70 -9.98 -0.01 9.06 16 10 O -0.58 -24.32 10.49 -148.98 -1.56 -25.89 16 11 C -0.13 -4.20 6.11 31.78 0.19 -4.00 16 12 C 0.12 3.28 6.99 86.73 0.61 3.89 16 13 N -1.00 -35.37 3.70 -505.51 -1.87 -37.24 16 14 S 2.75 95.64 6.11 -56.49 -0.35 95.29 16 15 O -0.97 -42.78 17.34 -128.00 -2.22 -45.00 16 16 O -0.95 -31.11 17.60 -128.00 -2.25 -33.36 16 17 C -0.38 -11.32 8.15 180.26 1.47 -9.85 16 18 N -0.44 -14.55 11.25 -197.74 -2.22 -16.78 16 19 C -0.06 -1.39 11.87 83.52 0.99 -0.40 16 20 C 0.04 0.52 12.04 83.08 1.00 1.52 16 21 N -0.50 -9.45 6.15 -195.76 -1.20 -10.65 16 22 H 0.45 5.24 8.96 -92.70 -0.83 4.41 16 23 C 0.12 5.32 5.07 87.02 0.44 5.76 16 24 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.38 13.10 9.11 -74.06 -0.67 12.43 16 26 H 0.08 2.56 8.03 -2.39 -0.02 2.54 16 27 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.21 3.18 8.06 -2.91 -0.02 3.16 16 31 H 0.25 0.40 8.06 -2.91 -0.02 0.38 16 32 H 0.05 2.44 4.61 -2.39 -0.01 2.43 16 33 H 0.08 3.37 8.04 -2.39 -0.02 3.36 16 Total: -1.00 -80.69 291.17 -4.84 -85.54 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -0.49 Total: 14.04 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 5.39 Total: -18.42 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -5.00 Total: -120.03 kcal Atomic # 8 Polarization: -98.21 SS G_CDS: -6.04 Total: -104.25 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.64 Total: 47.83 kcal Atomic # 16 Polarization: 95.64 SS G_CDS: -0.35 Total: 95.29 kcal Total: -80.69 -4.84 -85.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655797434.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.200 kcal (2) G-P(sol) polarization free energy of solvation -80.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds