Wall clock time and date at job start Tue Mar 31 2020 02:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00157 * 2 1 4 4 C 1.53009 * 109.46958 * 90.00210 * 3 2 1 5 5 C 1.52996 * 109.46924 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.46681 * 179.97438 * 5 4 3 7 7 C 1.36943 * 119.99781 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99788 * 359.97438 * 7 6 5 9 9 C 1.38811 * 119.99622 * 180.27904 * 7 6 5 10 10 N 1.31614 * 120.00467 * 359.72375 * 9 7 6 11 11 Si 1.86801 * 119.99700 * 179.72266 * 9 7 6 12 12 H 1.48504 * 109.47306 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47021 * 119.99661 * 11 9 7 14 14 H 1.48501 * 109.47039 * 240.00078 * 11 9 7 15 15 C 1.34780 * 119.99822 * 180.02562 * 2 1 3 16 16 O 1.21280 * 119.99458 * 179.97438 * 15 2 1 17 17 C 1.50694 * 119.99819 * 359.97438 * 15 2 1 18 18 O 1.42898 * 109.46865 * 180.02562 * 17 15 2 19 19 C 1.42904 * 114.00008 * 179.97438 * 18 17 15 20 20 H 1.08992 * 110.45306 * 27.39709 * 19 18 17 21 21 C 1.54510 * 110.50857 * 149.99684 * 19 18 17 22 22 C 1.54478 * 104.06080 * 118.64626 * 21 19 18 23 23 O 1.44429 * 104.80653 * 23.97665 * 22 21 19 24 24 C 1.44422 * 105.26977 * 319.49067 * 23 22 21 25 25 H 1.08996 * 109.47460 * 89.99162 * 1 2 3 26 26 H 1.08994 * 109.46930 * 209.99593 * 1 2 3 27 27 H 1.09004 * 109.47038 * 329.99757 * 1 2 3 28 28 H 1.09006 * 109.47276 * 330.00687 * 3 2 1 29 29 H 1.08997 * 109.47409 * 210.00171 * 3 2 1 30 30 H 1.08998 * 109.46895 * 59.99869 * 4 3 2 31 31 H 1.08997 * 109.47029 * 300.00194 * 4 3 2 32 32 H 1.09006 * 109.47179 * 60.00557 * 5 4 3 33 33 H 1.08997 * 109.47540 * 300.00020 * 5 4 3 34 34 H 0.97000 * 120.00410 * 0.02562 * 6 5 4 35 35 H 0.96995 * 120.00147 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.47066 * 299.99996 * 17 15 2 37 37 H 1.08995 * 109.47410 * 59.99823 * 17 15 2 38 38 H 1.09000 * 110.51407 * 237.28652 * 21 19 18 39 39 H 1.08998 * 110.51714 * 0.02562 * 21 19 18 40 40 H 1.09007 * 110.37416 * 142.80394 * 22 21 19 41 41 H 1.08998 * 110.37535 * 265.14493 * 22 21 19 42 42 H 1.09000 * 110.36895 * 281.67289 * 24 23 22 43 43 H 1.08999 * 110.36863 * 159.34071 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4426 5 6 3.2182 3.0350 1.4426 6 7 3.4618 3.4581 2.8239 7 6 4.1349 4.6241 3.0741 8 1 4.4865 5.2315 2.2532 9 6 4.3709 5.0220 4.3829 10 7 3.9429 4.2815 5.3833 11 14 5.2958 6.6086 4.7243 12 1 5.6670 7.2519 3.4383 13 1 4.4303 7.5277 5.5063 14 1 6.5260 6.3074 5.4997 15 6 2.1389 -1.1673 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3853 -2.4723 -0.0005 18 8 2.3139 -3.5584 -0.0005 19 6 1.6993 -4.8485 0.0001 20 1 0.7168 -4.8026 -0.4695 21 6 2.5977 -5.8764 -0.7236 22 6 2.9239 -6.9223 0.3655 23 8 1.8447 -6.8111 1.3190 24 6 1.5891 -5.3949 1.4407 25 1 -0.3634 0.0002 -1.0276 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.6084 2.0285 -0.5137 29 1 3.1499 1.1384 -0.5138 30 1 3.0416 0.9506 1.9563 31 1 1.5002 1.8406 1.9564 32 1 2.6294 3.7949 0.9287 33 1 4.1706 2.9043 0.9289 34 1 3.1464 2.9124 3.5612 35 1 4.1074 4.5598 6.2978 36 1 0.7590 -2.5302 0.8897 37 1 0.7583 -2.5298 -0.8902 38 1 2.0584 -6.3406 -1.5494 39 1 3.5108 -5.4007 -1.0814 40 1 2.9482 -7.9235 -0.0649 41 1 3.8763 -6.6898 0.8418 42 1 2.3368 -4.9282 2.0819 43 1 0.5881 -5.2227 1.8363 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670090062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:52 Heat of formation + Delta-G solvation = -109.340698 kcal Electronic energy + Delta-G solvation = -22405.537418 eV Core-core repulsion = 18872.672788 eV Total energy + Delta-G solvation = -3532.864630 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31111 -39.65343 -37.36318 -36.07625 -34.83286 -32.39924 -31.75251 -30.12128 -29.19843 -27.88690 -27.01131 -24.85207 -23.33958 -22.68364 -21.58956 -20.95025 -19.46129 -17.78077 -17.36171 -17.04370 -16.56885 -16.42599 -16.19512 -15.50980 -15.14837 -14.70128 -14.53769 -14.43861 -13.88944 -13.57880 -13.25848 -13.11044 -13.03409 -12.91053 -12.56514 -12.53302 -12.08387 -11.92822 -11.85026 -11.68168 -11.17051 -10.91764 -10.84521 -10.71863 -10.39510 -10.31239 -10.02956 -9.93755 -9.78311 -9.67760 -8.84306 -8.73398 -6.88457 -5.73026 -3.01696 2.47222 2.52601 3.36963 3.45911 3.51191 3.53763 3.72232 4.08877 4.27871 4.41846 4.48853 4.62589 4.67226 4.77173 4.82851 4.90120 4.92645 5.10915 5.21205 5.25911 5.33224 5.35413 5.40369 5.45647 5.48223 5.53133 5.59643 5.69479 5.90222 6.07992 6.25404 6.31339 6.40551 6.47437 6.72553 6.88249 6.90681 7.24796 7.73649 8.09212 8.45961 9.56807 10.15437 10.49987 11.50206 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.024027 B = 0.002537 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.096822 B =11035.590538 C =11650.379403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.615 5.615 3 C 0.120 3.880 4 C -0.140 4.140 5 C 0.156 3.844 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.071 0.929 9 C -0.017 4.017 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.291 1.291 15 C 0.511 3.489 16 O -0.512 6.512 17 C 0.044 3.956 18 O -0.348 6.348 19 C 0.054 3.946 20 H 0.079 0.921 21 C -0.156 4.156 22 C 0.045 3.955 23 O -0.372 6.372 24 C 0.022 3.978 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.393 -20.434 -14.919 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.350 5.350 3 C -0.002 4.002 4 C -0.178 4.178 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.218 1.218 15 C 0.297 3.703 16 O -0.386 6.386 17 C -0.036 4.036 18 O -0.266 6.266 19 C -0.005 4.005 20 H 0.097 0.903 21 C -0.193 4.193 22 C -0.032 4.032 23 O -0.291 6.291 24 C -0.055 4.055 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.543 -20.433 -14.850 27.371 hybrid contribution 0.035 0.907 0.486 1.030 sum -10.508 -19.526 -14.364 26.420 Atomic orbital electron populations 1.21858 0.79531 1.03690 1.01823 1.47838 1.07006 1.06113 1.74090 1.21519 0.97531 0.83025 0.98114 1.22064 1.01098 0.99051 0.95631 1.20541 0.96067 0.91840 0.88735 1.42367 1.68356 1.25964 1.01105 1.19299 1.27622 0.98129 0.91830 0.91078 1.24761 1.01771 0.99123 0.95571 1.69673 1.51591 1.38942 0.98128 0.86095 0.79224 0.83011 0.77753 1.20536 1.21884 1.21849 1.20155 0.88187 0.84727 0.77233 1.90766 1.13556 1.86849 1.47387 1.22361 0.92179 0.86626 1.02400 1.88109 1.31370 1.12309 1.94847 1.23582 0.96993 0.83856 0.96043 0.90271 1.23033 1.01669 0.95816 0.98811 1.23440 0.91049 0.99759 0.88944 1.89144 1.53772 1.22807 1.63390 1.23977 1.02638 0.82145 0.96755 0.92393 0.91336 0.90204 0.90283 0.89660 0.91548 0.91968 0.96378 0.96167 0.78328 0.93584 0.90141 0.90196 0.89667 0.88670 0.88732 0.91636 0.90667 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 10.24 59.85 0.61 1.14 16 2 N -0.61 -7.16 2.87 -181.57 -0.52 -7.68 16 3 C 0.12 1.63 5.41 -4.04 -0.02 1.61 16 4 C -0.14 -2.38 5.65 -26.73 -0.15 -2.54 16 5 C 0.16 3.28 6.26 -4.04 -0.03 3.25 16 6 N -0.73 -19.57 5.60 -59.91 -0.34 -19.91 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 10 N -0.93 -29.14 13.06 55.49 0.72 -28.41 16 11 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 14 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 15 C 0.51 6.91 7.75 -10.99 -0.09 6.83 16 16 O -0.51 -9.51 16.08 -14.35 -0.23 -9.74 16 17 C 0.04 0.41 4.81 36.00 0.17 0.59 16 18 O -0.35 -4.00 9.51 -55.14 -0.52 -4.53 16 19 C 0.05 0.44 3.61 -25.17 -0.09 0.35 16 20 H 0.08 0.48 7.82 -51.93 -0.41 0.07 16 21 C -0.16 -1.15 6.90 -25.16 -0.17 -1.32 16 22 C 0.04 0.34 7.63 37.93 0.29 0.63 16 23 O -0.37 -3.73 11.65 -35.23 -0.41 -4.14 16 24 C 0.02 0.19 7.38 37.93 0.28 0.47 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.35 6.44 -51.93 -0.33 0.02 16 27 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 28 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.09 1.29 7.42 -51.93 -0.39 0.90 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.38 10.73 7.67 -40.82 -0.31 10.42 16 35 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.08 0.57 7.40 -51.93 -0.38 0.19 16 37 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.78 8.00 -51.93 -0.42 0.37 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -36.78 357.24 -7.64 -44.43 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.27 Total: 3.29 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 0.56 Total: 3.37 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.13 Total: -56.00 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -1.17 Total: -18.41 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.78 -7.64 -44.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670090062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.913 kcal (2) G-P(sol) polarization free energy of solvation -36.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds