Wall clock time and date at job start Tue Mar 31 2020 02:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00157 * 2 1 4 4 C 1.53009 * 109.46958 * 90.00210 * 3 2 1 5 5 C 1.52996 * 109.46924 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.46681 * 179.97438 * 5 4 3 7 7 C 1.36943 * 119.99781 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99788 * 359.97438 * 7 6 5 9 9 C 1.38811 * 119.99622 * 180.27904 * 7 6 5 10 10 N 1.31614 * 120.00467 * 359.72375 * 9 7 6 11 11 Si 1.86801 * 119.99700 * 179.72266 * 9 7 6 12 12 H 1.48504 * 109.47306 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47021 * 119.99661 * 11 9 7 14 14 H 1.48501 * 109.47039 * 240.00078 * 11 9 7 15 15 C 1.34780 * 119.99822 * 180.02562 * 2 1 3 16 16 O 1.21280 * 119.99458 * 179.97438 * 15 2 1 17 17 C 1.50694 * 119.99819 * 359.97438 * 15 2 1 18 18 O 1.42898 * 109.46865 * 180.02562 * 17 15 2 19 19 C 1.42904 * 114.00008 * 179.97438 * 18 17 15 20 20 H 1.08992 * 110.45306 * 27.39709 * 19 18 17 21 21 C 1.54510 * 110.50857 * 149.99684 * 19 18 17 22 22 C 1.54478 * 104.06080 * 118.64626 * 21 19 18 23 23 O 1.44429 * 104.80653 * 23.97665 * 22 21 19 24 24 C 1.44422 * 105.26977 * 319.49067 * 23 22 21 25 25 H 1.08996 * 109.47460 * 89.99162 * 1 2 3 26 26 H 1.08994 * 109.46930 * 209.99593 * 1 2 3 27 27 H 1.09004 * 109.47038 * 329.99757 * 1 2 3 28 28 H 1.09006 * 109.47276 * 330.00687 * 3 2 1 29 29 H 1.08997 * 109.47409 * 210.00171 * 3 2 1 30 30 H 1.08998 * 109.46895 * 59.99869 * 4 3 2 31 31 H 1.08997 * 109.47029 * 300.00194 * 4 3 2 32 32 H 1.09006 * 109.47179 * 60.00557 * 5 4 3 33 33 H 1.08997 * 109.47540 * 300.00020 * 5 4 3 34 34 H 0.97000 * 120.00410 * 0.02562 * 6 5 4 35 35 H 0.96995 * 120.00147 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.47066 * 299.99996 * 17 15 2 37 37 H 1.08995 * 109.47410 * 59.99823 * 17 15 2 38 38 H 1.09000 * 110.51407 * 237.28652 * 21 19 18 39 39 H 1.08998 * 110.51714 * 0.02562 * 21 19 18 40 40 H 1.09007 * 110.37416 * 142.80394 * 22 21 19 41 41 H 1.08998 * 110.37535 * 265.14493 * 22 21 19 42 42 H 1.09000 * 110.36895 * 281.67289 * 24 23 22 43 43 H 1.08999 * 110.36863 * 159.34071 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4426 5 6 3.2182 3.0350 1.4426 6 7 3.4618 3.4581 2.8239 7 6 4.1349 4.6241 3.0741 8 1 4.4865 5.2315 2.2532 9 6 4.3709 5.0220 4.3829 10 7 3.9429 4.2815 5.3833 11 14 5.2958 6.6086 4.7243 12 1 5.6670 7.2519 3.4383 13 1 4.4303 7.5277 5.5063 14 1 6.5260 6.3074 5.4997 15 6 2.1389 -1.1673 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3853 -2.4723 -0.0005 18 8 2.3139 -3.5584 -0.0005 19 6 1.6993 -4.8485 0.0001 20 1 0.7168 -4.8026 -0.4695 21 6 2.5977 -5.8764 -0.7236 22 6 2.9239 -6.9223 0.3655 23 8 1.8447 -6.8111 1.3190 24 6 1.5891 -5.3949 1.4407 25 1 -0.3634 0.0002 -1.0276 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.6084 2.0285 -0.5137 29 1 3.1499 1.1384 -0.5138 30 1 3.0416 0.9506 1.9563 31 1 1.5002 1.8406 1.9564 32 1 2.6294 3.7949 0.9287 33 1 4.1706 2.9043 0.9289 34 1 3.1464 2.9124 3.5612 35 1 4.1074 4.5598 6.2978 36 1 0.7590 -2.5302 0.8897 37 1 0.7583 -2.5298 -0.8902 38 1 2.0584 -6.3406 -1.5494 39 1 3.5108 -5.4007 -1.0814 40 1 2.9482 -7.9235 -0.0649 41 1 3.8763 -6.6898 0.8418 42 1 2.3368 -4.9282 2.0819 43 1 0.5881 -5.2227 1.8363 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670090062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:51 Heat of formation + Delta-G solvation = -136.373054 kcal Electronic energy + Delta-G solvation = -22406.709629 eV Core-core repulsion = 18872.672788 eV Total energy + Delta-G solvation = -3534.036841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17203 -40.43904 -38.16072 -37.40952 -36.41729 -34.13906 -32.50870 -31.74766 -29.92477 -28.85219 -27.90435 -26.39949 -24.45370 -23.90919 -22.55291 -22.20490 -20.41470 -19.18064 -18.54037 -18.14349 -17.33249 -17.26757 -17.11608 -16.59062 -16.23700 -15.95853 -15.83111 -15.57369 -15.17837 -15.07802 -14.58696 -14.16489 -13.91956 -13.66758 -13.56613 -13.39095 -13.20404 -13.05387 -12.81112 -12.74834 -12.62258 -12.40805 -12.28356 -12.04930 -11.84871 -11.81289 -11.75033 -10.98114 -10.97164 -10.82892 -10.61064 -9.71954 -9.05266 -7.98567 -5.28795 1.45318 1.47497 1.51954 1.57685 1.68535 2.53620 2.67292 3.10860 3.35033 3.45549 3.58687 3.78692 3.84466 3.93805 4.01809 4.09574 4.20352 4.23560 4.26436 4.30509 4.37827 4.51219 4.58195 4.66349 4.70517 4.70961 4.75496 4.78444 4.87913 4.89074 4.97199 4.99287 5.26275 5.27823 5.46128 5.49070 5.63356 6.06563 6.23765 6.37436 7.12866 7.29094 8.04039 8.27514 9.25621 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.024027 B = 0.002537 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.096822 B =11035.590538 C =11650.379403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.612 5.612 3 C 0.127 3.873 4 C -0.122 4.122 5 C 0.154 3.846 6 N -0.750 5.750 7 C -0.248 4.248 8 H 0.078 0.922 9 C -0.080 4.080 10 N -0.972 5.972 11 Si 0.979 3.021 12 H -0.264 1.264 13 H -0.289 1.289 14 H -0.294 1.294 15 C 0.499 3.501 16 O -0.578 6.578 17 C 0.048 3.952 18 O -0.384 6.384 19 C 0.053 3.947 20 H 0.111 0.889 21 C -0.155 4.155 22 C 0.039 3.961 23 O -0.390 6.390 24 C 0.019 3.981 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.012 0.988 34 H 0.372 0.628 35 H 0.252 0.748 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.115 0.885 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.584 -20.479 -16.534 29.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.345 5.345 3 C 0.004 3.996 4 C -0.161 4.161 5 C 0.027 3.973 6 N -0.393 5.393 7 C -0.380 4.380 8 H 0.096 0.904 9 C -0.272 4.272 10 N -0.623 5.623 11 Si 0.807 3.193 12 H -0.188 1.188 13 H -0.215 1.215 14 H -0.221 1.221 15 C 0.288 3.712 16 O -0.457 6.457 17 C -0.031 4.031 18 O -0.303 6.303 19 C -0.005 4.005 20 H 0.129 0.871 21 C -0.192 4.192 22 C -0.037 4.037 23 O -0.310 6.310 24 C -0.058 4.058 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.101 0.899 28 H 0.129 0.871 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.030 0.970 34 H 0.203 0.797 35 H 0.061 0.939 36 H 0.125 0.875 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.133 0.867 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.789 -20.477 -16.515 29.251 hybrid contribution 0.688 0.886 0.950 1.470 sum -12.101 -19.591 -15.565 27.794 Atomic orbital electron populations 1.22224 0.76214 1.05141 1.04051 1.47943 1.08951 1.04834 1.72792 1.21318 0.97866 0.85027 0.95384 1.21864 1.00153 0.96019 0.98035 1.20714 0.96435 0.94144 0.85989 1.42629 1.68249 1.25409 1.02981 1.19726 1.27219 0.98818 0.92221 0.90411 1.25674 1.03238 1.02808 0.95438 1.69835 1.53218 1.40906 0.98327 0.84992 0.77462 0.78851 0.77954 1.18848 1.21548 1.22089 1.21079 0.87774 0.86559 0.75834 1.90733 1.16525 1.87882 1.50592 1.22502 0.91438 0.83768 1.05380 1.88083 1.33302 1.13782 1.95113 1.23763 0.98400 0.82577 0.95770 0.87077 1.23073 1.01374 0.95535 0.99246 1.23582 0.90148 1.01163 0.88802 1.89119 1.54304 1.23471 1.64070 1.24051 1.03040 0.81591 0.97158 0.89693 0.88858 0.89928 0.87057 0.91787 0.94767 0.91079 0.94557 0.97001 0.79663 0.93897 0.87508 0.86272 0.87280 0.90080 0.86660 0.92746 0.92973 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 10.24 127.77 1.31 1.98 16 2 N -0.61 -13.14 2.87 -846.74 -2.43 -15.58 16 3 C 0.13 3.34 5.41 86.38 0.47 3.81 16 4 C -0.12 -4.17 5.65 30.60 0.17 -4.00 16 5 C 0.15 6.48 6.26 86.38 0.54 7.02 16 6 N -0.75 -40.62 5.60 -343.44 -1.92 -42.54 16 7 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 9 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 10 N -0.97 -61.60 13.06 21.65 0.28 -61.32 16 11 Si 0.98 47.36 29.55 68.60 2.03 49.39 16 12 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 14 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 15 C 0.50 13.18 7.75 87.65 0.68 13.86 16 16 O -0.58 -22.42 16.08 16.01 0.26 -22.16 16 17 C 0.05 0.78 4.81 71.23 0.34 1.12 16 18 O -0.38 -8.47 9.51 -129.94 -1.24 -9.70 16 19 C 0.05 0.77 3.61 31.61 0.11 0.88 16 20 H 0.11 0.89 7.82 -2.39 -0.02 0.88 16 21 C -0.15 -2.09 6.90 31.61 0.22 -1.88 16 22 C 0.04 0.58 7.63 72.48 0.55 1.14 16 23 O -0.39 -7.50 11.65 -148.98 -1.74 -9.24 16 24 C 0.02 0.31 7.38 72.48 0.53 0.84 16 25 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.09 0.53 6.44 -2.39 -0.02 0.51 16 27 H 0.08 0.86 8.07 -2.38 -0.02 0.84 16 28 H 0.11 2.21 8.07 -2.38 -0.02 2.19 16 29 H 0.06 1.97 7.42 -2.39 -0.02 1.96 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.37 21.42 7.67 -92.71 -0.71 20.71 16 35 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.11 1.15 7.40 -2.39 -0.02 1.13 16 37 H 0.12 0.98 8.07 -2.39 -0.02 0.96 16 38 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 1.33 8.00 -2.39 -0.02 1.31 16 40 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 42 H 0.05 1.08 8.08 -2.39 -0.02 1.06 16 43 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -83.14 357.24 1.75 -81.39 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.28 Total: 22.93 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 6.24 Total: 6.83 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -4.07 Total: -119.44 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -2.71 Total: -41.10 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -83.14 1.75 -81.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670090062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.982 kcal (2) G-P(sol) polarization free energy of solvation -83.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds